Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,602,017 (C)7→8 coding (200/2019 nt) hyfB → hydrogenase 4 component B

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,602,0101.C94.5% 174.1 / 3.1 56coding (193/2019 nt)hyfBhydrogenase 4 component B
Reads supporting (aligned to +/- strand):  ref base . (2/1);  new base C (22/30);  total (25/31)
Fisher's exact test for biased strand distribution p-value = 5.75e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01

TGGCTTCGCTGTTTTTACTCGGTCTGGACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTG‑‑CCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGTTTGTTCTCTCTATTCATTGACTTATATG  >  NC_000913/2601873‑2602126
                                                                                                                                           |                                                                                                                       
tGGCTTCGCTGTTTTTACTCGGTCTGGACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTG‑‑cc                                                                                                                     >  1:826516/1‑140 (MQ=255)
tGGCTTCGCTGTTTTTACTCGGTCTGGACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTG‑‑cc                                                                                                                     >  2:692956/1‑140 (MQ=255)
  gCTTCGCTGTTTTTACTCGGTCTGGACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAACTACATGCTGGTGTAACTTTAGTCGCCCGTTTTG‑‑cccc                                                                                                                  <  2:664020/140‑1 (MQ=255)
   cTTCGCTGTTTTTACTCGGTCTGGACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTG‑‑ccccc                                                                                                                 <  2:33098/140‑1 (MQ=255)
   cTTCGCTGTTTTTACTCGGTCTGGACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTG‑‑ccccc                                                                                                                 <  2:826516/140‑1 (MQ=255)
                  tCGGTCTGGACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGc                                                                                                   <  1:594154/140‑1 (MQ=255)
                     gTCTGGACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGa                                                                                                >  2:110579/1‑140 (MQ=255)
                     gTCTGGACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCAGGTGTAACTTTAGTTGACCGTTTTGTCCCCCGCTTTTGAGTTTGCCGa                                                                                                >  2:449197/1‑140 (MQ=255)
                       cTGGACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAATCGCCCGTTTTAC‑‑CCCCCCCTGTTGAATTTGCCGAtt                                                                                              >  1:432824/1‑140 (MQ=255)
                            cAGACTGGCTATTAAGCTTTCCTGCATCATATCGCTGTTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAAcc                                                                                         <  1:356788/140‑1 (MQ=255)
                               aCTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTg                                                                                      >  2:768434/1‑140 (MQ=255)
                               aCTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGGTTTG‑‑CCCGCCCATTATGAATTGGCCGATTTAACCCTg                                                                                      >  1:286943/1‑140 (MQ=255)
                                    cTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGaa                                                                                  >  2:976179/1‑140 (MQ=255)
                                             tttCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCct                                                                        >  1:865292/1‑140 (MQ=255)
                                             tttCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGCGCAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCct                                                                        >  2:254421/1‑140 (MQ=255)
                                               tCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTAGAATTTGCCGAATTGACCCTGAGAATGGATAGCctct                                                                      >  1:301586/1‑140 (MQ=255)
                                                 cGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGGATTTGCCCATTAAATCCTGCGAATGGATAGCCTCTCg                                                                    >  1:454942/1‑140 (MQ=255)
                                                 cGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTG‑‑CCCCCCCTTTTGAATTTGCCGATTTAACCCTGAGAATGGATAGCCTCTCgg                                                                   >  2:836557/1‑140 (MQ=255)
                                                      tCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCAtt                                                               >  1:902010/1‑140 (MQ=255)
                                                       cacaTCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCCTTTGAATTGGCCGATTTAACCCTGCAAATGCATAGCCTCTCGGCAttt                                                              >  2:358839/1‑140 (MQ=255)
                                                        acaTCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTa                                                             <  2:902010/140‑1 (MQ=255)
                                                           tCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCTGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATgg                                                          <  1:215206/140‑1 (MQ=255)
                                                            cggtggtggGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGt                                                         <  1:1001307/137‑1 (MQ=255)
                                                              cTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGc                                                       <  1:202872/140‑1 (MQ=255)
                                                              cTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATGTAATCCTACGAATGGAAAGCCTCTCGGCATTTATGGTGc                                                       >  2:352996/1‑140 (MQ=255)
                                                                ggtggGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTg                                                     >  2:194323/1‑140 (MQ=255)
                                                                 gtggGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGTCTCTCgg                                                                   >  2:423806/1‑125 (MQ=255)
                                                                 gtggGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCgg                                                                   <  1:423806/125‑1 (MQ=255)
                                                                 gtggGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTa                                                             >  2:215244/1‑131 (MQ=255)
                                                                 gtggGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTa                                                             <  1:215244/131‑1 (MQ=255)
                                                                  tggGCGGCGTGATTGGCGTCATCAGCGGAATGACGTAATGACATGCTGTTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGt                                                   <  2:301586/140‑1 (MQ=255)
                                                                   gggCGGCGTGATTGGCATCATCCGCGGAATTACCCAATTCCATGCTGGGGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGtt                                                  <  2:454942/140‑1 (MQ=255)
                                                                     gcggcgTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGAGAATGGATAGCTTCACGGCATTTATGGTGCTGGTTAt                                                >  1:382855/1‑140 (MQ=255)
                                                                       ggcgTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTAtct                                              <  2:645478/140‑1 (MQ=255)
                                                                         cgTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCTGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTcc                                            <  2:56487/140‑1 (MQ=255)
                                                                             aTTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGc                                        <  2:526971/140‑1 (MQ=255)
                                                                                  catcatCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCtggtg                                   <  1:951927/140‑1 (MQ=255)
                                                                                  catcatCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCtggtg                                   <  1:122567/140‑1 (MQ=255)
                                                                                    tcatcaGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCtggtggt                                 >  2:211236/1‑140 (MQ=255)
                                                                                     catcaGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCtggtggt                                 <  1:976179/140‑1 (MQ=255)
                                                                                       tcaGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAATCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTggtggtggt                              <  2:228252/140‑1 (MQ=255)
                                                                                       tcaGCGGAATTACGCAATTACATGCAGGTCTAACTTTCGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTggtggtggt                              <  1:277133/140‑1 (MQ=255)
                                                                                       tcaGCGGAATTACGCAATTACACGCAGGTCTAACTTTTGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTggtggtggt                              <  1:358839/140‑1 (MQ=255)
                                                                                         aGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGttt                            <  1:194323/140‑1 (MQ=255)
                                                                                           cGGAATTACGCAATTACTTGCTTGTGTAACTATAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGTTTGt                          <  2:382855/140‑1 (MQ=255)
                                                                                           cGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGTTTGt                          <  1:582775/140‑1 (MQ=255)
                                                                                             gAATTACGCAATTACTTGCTGGGGTAACTCTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGTTTGTtc                        <  1:449197/140‑1 (MQ=255)
                                                                                             gAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGTTTGTtc                        <  1:110579/140‑1 (MQ=255)
                                                                                             gAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGTTTGTtc                        <  2:966392/140‑1 (MQ=255)
                                                                                             gAATTACGCAATTACATGCTGGCGTAACTATAGTCGCACGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGTTTGTtc                        <  1:312536/140‑1 (MQ=255)
                                                                                                 tACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGTTTGTtctctc                    <  1:714374/140‑1 (MQ=255)
                                                                                                        ttACATGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGTTTGTTCTCTCTATTCAt             <  1:211236/140‑1 (MQ=255)
                                                                                                        ttACATGCTGGTGTAACCTTAGTCGCCCGTTTTG‑‑CTCCCTCCTTTTGACTTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGTTTGTTCTCTCTATTCAt             <  2:286943/140‑1 (MQ=255)
                                                                                                             tGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGTTTGTTctctct                   >  2:641109/1‑129 (MQ=255)
                                                                                                             tGCTGGTGTAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGTTTGTTctctct                   <  1:641109/129‑1 (MQ=255)
                                                                                                                  gtgtAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGTTTGTTCTCTCTATTCATTGACTTatat   >  1:38011/1‑140 (MQ=255)
                                                                                                                  gtgtAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGTTTGTTCTCTCTATTCATTGACTTatat   >  2:140748/1‑140 (MQ=255)
                                                                                                                  gtgtAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGATGGTGGTCGTTCGTCCTCTCTATTCATTGACTTatat   >  1:445382/1‑140 (MQ=255)
                                                                                                                   tgtAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGTTTGTTCTCTCTATTCATTGACTTATATg  >  1:31305/1‑140 (MQ=255)
                                                                                                                   tgtAACTTTAGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGTTTGTTCTCTCTATTCATTGACTTATATg  >  1:912468/1‑140 (MQ=255)
                                                                                                                            aGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGTTTGTTCTCTCTATTCATTGACTtata    >  2:823102/1‑129 (MQ=255)
                                                                                                                            aGTCGCCCGTTTTGCCCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGTTTGTTCTCTCTATTCATTGACTtata    <  1:823102/129‑1 (MQ=255)
                                                                                                                                           |                                                                                                                       
TGGCTTCGCTGTTTTTACTCGGTCTGGACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTTAGTCGCCCGTTTTG‑‑CCCCCCCTTTTGAATTTGCCGATTTAACCCTGCGAATGGATAGCCTCTCGGCATTTATGGTGCTGGTTATCTCCTTGCTGGTGGTGGTTTGTTCTCTCTATTCATTGACTTATATG  >  NC_000913/2601873‑2602126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: