| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,638,026 | (C)6→7 | coding (627/1179 nt) | bamB ← | outer membrane protein assembly factor BamB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,638,020 | 1 | . | C | 90.9% | 101.0 / 3.6 | 33 | coding (633/1179 nt) | bamB | outer membrane protein assembly factor BamB |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base C (15/15); total (17/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
CAACGCCGTTAACAACGACGGGAGTCGTGTCAACATCGCTCAGACGGTCAATTTCGGTAGAACCGGTCGCCTGGGAAATACGCTGCTGCCAAATCATCTGGCCCTGTTCCATCAGCACTGCGCTGACGCGACCATTATC‑G‑CC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGAGGTTAACTGTCCATTTGACAGCGCCGTCAGCTTCGTTCAGCGCTTGTAACTGACCGTTAC > NC_000913/2637881‑2638153 | caacGCCGTTAACAACGACGGGAGTCGAGTCAACATCGCTCAGACGGTCAATTTCGGTAGAACCGGTCGCCTGGGAAATACGCTGCTGCCAAATCATCTGGCCCTGTTCCATCAGCACTGCGCTGACGCGACCATTATC‑g < 2:124331/140‑1 (MQ=255) gCCGTTAACAACGACGGGAGTCGTGTCAACATCGCTCAGACGGTCAATTTCGGTAGAACCGGTCGCCTGGGAAATACGCTGCTGCCAAATCATCTGGCCCTGTTCCATCAGCACTGCGCTGACGCGACCATTATC‑G‑cc‑cc > 2:508699/1‑140 (MQ=255) tAACAACGACGGGAATCGTGTCAACATCGCTCAGACGGTCAATTTCGGTAGAACCGGTCGCCTGGGAAATACGCTGCTGCCAAATCATCTGGCCCTGTTCCATCAGCACTGCGCTGACGCGACCATTATC‑G‑cc‑cc‑cccac > 2:905769/1‑137 (MQ=255) acgGGAGTCGTGTCAACATCGCTCAGACGGTCAATTTCGGTAGAACCGGTCGCCTGGGAAATACGCTGCTGCCAAATCATCTGGCCCTGTTCCATCAGCACTGCGCTGACGCGAACAGTATC‑GCCC‑CC‑CCACGACGGCCg > 1:350130/1‑140 (MQ=255) ggAGTCGTGTCAACATCGCTCAGACGGTCAATTTCGGTAGAACCGGTCGCCTGGGAAATACGCTGCTGCCAAATCATCTGGCCCTGTTCCATCAGCACTGCGCTGACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCAc > 2:30825/1‑140 (MQ=255) gAGTCGTGTCAACATCGGTCAGACGGTCAATCTCGTTAGTACCGGTCGCCTGGGAAATACGCTGCTGCCAAATCATCTGGCCCTGTTCCATCAGCACTGCGCTGACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCAcc < 2:409375/140‑1 (MQ=255) aGTCGTGTCAACATCGCTCAGACGGTCAATTTCGGTAGAACCGGTCGCCTGGGAAATACGCTGCTGCCAAATCATCTGGCCCTGTTCCATCAGCACTGCGCTGACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCa > 1:560964/1‑140 (MQ=255) gTCGTGTCAACATCGCTCAGACGGTCAATTTTGGTAGAACCGGTCGCCTGGGAAATACGCTGCTGCCAAATCATCTGGCCCTGTTCCATCAGCACTGCGCTGACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCaa < 2:360656/140‑1 (MQ=255) gTCGTGTCAACATCGCTCAGACGGTCAATTTCGGTAGAACCGGTCGCCTGGGAAATACGCTGCTGCCAAATCATCTGGCCCTGTTCCATCAGCACTGCGCTGACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCaa < 1:228766/140‑1 (MQ=255) cATCGCTCAGACGGTCAATTTCGGTAGAACCGGTCGCCTGGGAAATACGCTGCTGCCAAATCATCTGGCCCTGTTCCATCAGCACTGCGCTGACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGt < 1:656717/140‑1 (MQ=255) cTCAGACGGTCAATTTCGGTAGAACCGGTCGCCTGGGAAATACGCTGCTGCCAAATCATCTGGCCCTGTTCCATCAGCACTGCGCTGACGCGACCATTATCGG‑CC‑CC‑CCAGGACCGCAGCACCAAAAGCCGCTGTCGgcg > 1:386204/1‑140 (MQ=255) cTCAGACGGTCAATTTCGGTAGAACCGGTCGCCTGGGAAATACGCTGCTGCCAAATCATCTGGCCCTGTTCCATCAGCACTGCGCTGACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGgcg > 2:892830/1‑140 (MQ=255) gACGGTCAATTTCGGTAGAACCGGTCGCCTGGGAAATACGCTGCTGCCAAATCATCTGGCCCTGTTCCATCAGCACTGCGCTGACGCGACCATTATC‑G‑CC‑CCTCCACGACAGCCGCATCAAAAGCCGTTGTCGGCGCAGa > 1:416036/1‑140 (MQ=255) tCAATTTCGGTAGAACCGGTCGCCTGGGAAATACGCTGCTGCCAAATCATCTGGCCCTGTTCCATCAGCACTGCGCTGACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGc < 1:58620/140‑1 (MQ=255) gcAATTTCGGTAGAACTCGTCGCCTGGGAAATATGCCGCTGCCAAATCGTCCGGCCCTGTTCCCACCGCCCTGGGCTGGCGCGGCCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGc < 2:448858/139‑1 (MQ=255) ccGGTCGCCTGGGAAATACGCTCCTGCCAAATCATATGGCCCTGTTCCTTCAGCACTGCGCTGACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCg < 2:368077/140‑1 (MQ=255) gTCGCCTGGGAAATACGCTGCTGCCAAATCATCTGGCCCTGTTCCATCAGCACTGCGCTGACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAg < 1:508699/140‑1 (MQ=255) cGCCTGGGAAATACGCTGCTGCCAAATCATCTAGCCCTGTTCCATCAGCACTGCGCTGACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGc > 2:162638/1‑140 (MQ=255) gggAAATACGCTGCTGCCAAATCATCTGGCCCTGTTCCATCAGCACTGCGCTGACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATc < 1:30825/140‑1 (MQ=255) atcatcTGGCCCTGTTCCATCAGCACTGCGCTGACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGAGGTTAACTGTCCATTTGa < 1:892830/140‑1 (MQ=255) ttCCATCAGCACTGCGCTGACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGAGGTTAACTGTCCATTTGACAGCGCCGTCAGCt > 1:778933/1‑140 (MQ=255) tCAGCACTGCGCTGACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGGGGTTAACGGTCTATATGACAGGGCCGTCAGCTTCGtt > 1:267010/1‑140 (MQ=255) tCAGCACTGCGCTGACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGAGGTTAACTGTCCATTTGACAGCGCCGTCAGCTTCGtt > 1:839334/1‑140 (MQ=255) tCAGCACTGCGCTGACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGAGGTTAACGGTCCATTTGACAGGGCCGTCAGCTTCGtt > 1:337229/1‑140 (MQ=255) gcgcTGACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGAGGTTAACTGTCCATTTGACAGCGCCGTCAGCTTCGTTCAGCGCtt > 2:618101/1‑140 (MQ=255) cgcTGACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGAGGTTAACTGTCCATTTGACAGCGCCGTCAGCTTCGTTCAGCGCTTg > 1:955324/1‑140 (MQ=255) cgcTGACGCGACCATTATC‑G‑CCACC‑CCACGACGGCTGCATCAAAAGCCATTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGAGGTTAACTGTCCATTTGACAGCGCCGTCAGCTTCGTTCAGCGCTTg < 2:416036/140‑1 (MQ=255) gACGCGACCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGAGGTTAACTGTCCATTTGACAGCGCCGTCAGCTTCGTTCAGCGCTTGTAAc < 2:955324/140‑1 (MQ=255) cgcgACCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGAGGTTAACTGTCCATTTGACAGCGCCGTCAGCTTCGTTCAGCGCTTGTAACTg < 2:560964/140‑1 (MQ=255) aCCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGAGGTTAACTGTCCATTTGACAGCGCCGTCAGCTTCGTTCAgcgc > 1:49881/1‑127 (MQ=255) aCCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGAGGTTAACTGTCCATTTGACAGCGCCGTCAGCTTCGTTCAgcgc < 2:49881/127‑1 (MQ=255) aCCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGAGGTTAACTGTCCATTTGACAGCGCCGTCAGCTTCGTTCAGCGCTTGTAACTGACCg > 1:139456/1‑140 (MQ=255) aCCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGAGGTTAACTGTCCATTTGACAGCGCCGTCAGCTTCGTTCAGCGCTTGTAACTGACCg > 1:68286/1‑140 (MQ=255) aCCATTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGAGGTTAACTGTCCATTTGACAGCGCCGTCAGCTTCGTTCAGCGCTCGTAACTGACCg > 2:912659/1‑140 (MQ=255) aTTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGAGGTTAACTGTCCATTTGACAGCGCCGTCAGCTTCGTTCAGCGCTTGTAACTGACCGTTa < 1:905769/140‑1 (MQ=255) aTTATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGAGGTTAACTGTCCATTTGACAGCGCCGTCAGCTTCGTTCAGCGCTTGTAACTGACCGTTa < 1:138053/140‑1 (MQ=255) ttATC‑GCCC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGAGGTTAACTGTCCATTTGACAGCGCCGTCAGCTTCGTTCAGCGCTTGTAACTGACCGTTAc < 2:148746/140‑1 (MQ=255) | CAACGCCGTTAACAACGACGGGAGTCGTGTCAACATCGCTCAGACGGTCAATTTCGGTAGAACCGGTCGCCTGGGAAATACGCTGCTGCCAAATCATCTGGCCCTGTTCCATCAGCACTGCGCTGACGCGACCATTATC‑G‑CC‑CC‑CCACGACGGCCGCACCAAAAGCCGTTGTCGGCGCAGACTCGCCACGCAAAGAGAGCGAAGGCATATCGAGGTTAACTGTCCATTTGACAGCGCCGTCAGCTTCGTTCAGCGCTTGTAACTGACCGTTAC > NC_000913/2637881‑2638153 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |