| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,936,923 | T→C | V91A (GTT→GCT) | yebK → | DNA‑binding transcriptional repressor YebK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,936,923 | 0 | T | C | 98.2% | 187.2 / ‑4.4 | 54 | V91A (GTT→GCT) | yebK | DNA‑binding transcriptional repressor YebK |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (26/27); total (27/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.45e-01 | |||||||||||
CGAACCGACGGTGAATCGTTTCTGTCGCAGCATGGACACGCGCGGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGTTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGACTTGCTCACTCAGGCAAAAAAAATCGCCTTTTTCGGATTA > NC_000913/1936792‑1937059 | cGAACCGACGGTGAATCGTTTCTGTCGCAGCATGGACACGCGCGGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCAt > 1:512075/1‑140 (MQ=255) aCCGACGGTGAATCGTTTCTGTCGCAGCATGGACACGCGCGGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATaca < 1:772136/140‑1 (MQ=255) cGACGGTGAATCGTTCCTGTCGTAGGATGGACACGCGCGGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATAcaca < 1:408179/140‑1 (MQ=255) cGTTTCTGTCGCAGCATGGACACGCGCGGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATAtt < 1:1019516/140‑1 (MQ=255) tGTCGCAGCATGGACACGCGCGGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTc < 1:894711/140‑1 (MQ=255) cagcaTGGACACGCGCGGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCaa < 2:572932/140‑1 (MQ=255) caTGGACACGCGCGGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATgg > 1:1012275/1‑140 (MQ=255) caTGGACACGCGCGGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATgg < 2:512075/140‑1 (MQ=255) aTGGACACGCGCGGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGc < 2:82766/140‑1 (MQ=255) aTGGACACGCGCGGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGc < 1:551800/140‑1 (MQ=255) aTGGACACGCGCGGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGc < 1:777992/140‑1 (MQ=255) aTGGACACGCGCGGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGc < 1:202426/140‑1 (MQ=255) aTGGACACGCGCGGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGc < 2:1012275/140‑1 (MQ=255) ggACACGCGCGGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCaa < 2:195515/140‑1 (MQ=255) acacGCGCGGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCa > 2:114066/1‑137 (MQ=255) acacGCGCGGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCa < 1:114066/137‑1 (MQ=255) cacGCGCGGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGTGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGc < 2:649962/140‑1 (MQ=255) cgGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATc > 1:941353/1‑140 (MQ=255) gTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCa > 1:954653/1‑128 (MQ=255) gTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCa < 2:954653/128‑1 (MQ=255) tttCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGt < 1:204689/140‑1 (MQ=255) ttCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTc < 2:927513/140‑1 (MQ=255) ttCCTGATTTTAAACTTCATCTGGCACAGAGTCCGGCGACTGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTc < 2:465316/140‑1 (MQ=255) ttttAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCAtt < 1:161721/140‑1 (MQ=255) tttAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGTTGAATCATACACAGGGAAAATATTTAAGTCCGCCATGGCAACGCTTGATCATGTCCGTCATTc > 1:390306/1‑140 (MQ=255) ttAAACTTCATCTGGTACAGAGTCTCGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCa < 1:415898/140‑1 (MQ=255) ttAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCa < 1:190995/140‑1 (MQ=255) tCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAAGGCTGGAGCATGTCCGTCATTCACTGGATa > 1:389778/1‑140 (MQ=255) tCTGGCACAGAGTCTCGCGAATCGCCCTCCCTATGTTTATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAAt < 1:297347/140‑1 (MQ=255) tCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGACCATGTCCGTCATTCACTGGATAAATCTGCCATCAAcc > 1:436343/1‑140 (MQ=255) tGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACcgc > 2:256870/1‑140 (MQ=255) tGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATAGCAACGCTTGATCATGTCCGTAATTCACTCGATAAATCTGCCATCAACcgc > 2:694038/1‑140 (MQ=255) ggCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACcgcg > 2:863521/1‑140 (MQ=255) ggCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCAGGTCCGTCCTTCACTGGATAAATCTGCCATCAACcgcg > 1:491402/1‑140 (MQ=255) gAATGGCATTCCCTATTATAATTGCAATGTTCACGTAGATGACAGCGCGGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCg < 2:491402/140‑1 (MQ=255) ggCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGTTCATGTCCTTCAGTCAGTGGATAAATCTGCTATCAACCGCGCCGTCGa > 2:263671/1‑140 (MQ=255) ggCACTCCCTATGTTAACCGCAATGTCAATGCAGATGACTGCGCTGAAACATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGa < 2:296693/140‑1 (MQ=255) tATGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGACTTGctcac > 1:996629/1‑140 (MQ=255) tGTTAATCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAAGCGCGGCGTCGACTTGctcactc > 2:411949/1‑140 (MQ=255) aaTCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTGACTGGATAGATCGGCCGTCAACCGCGCCGTGGACTTGCTCACTCAGGc > 2:258020/1‑140 (MQ=255) tCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGACTTGCTCACTCAGGCaa > 2:553473/1‑140 (MQ=255) tCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGACTTGCTCACTCAGGCaa > 2:47954/1‑140 (MQ=255) tCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGACTTGCTCACTCAGGCaa > 2:965261/1‑140 (MQ=255) tCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGACTTGCTCACTCAGGCaa > 1:954020/1‑140 (MQ=255) tCGCAATGTCAATGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGACTTGCTCACTCAGGCaa > 1:878546/1‑140 (MQ=255) aTGAAGATGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGACTTGCTCACTCAGGC‑AAAAAAATCGccn > 1:823145/1‑139 (MQ=255) aGATGACAGCGCTGACTCATACACATGGAAAATATTTTAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGACTTGCTCACTCAGGCAAAAAAAATCGCCtttt < 1:428612/140‑1 (MQ=255) aTGACAGCGCTGAATCATACACCGGCAAATTATTTGAATCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGACTTGCTCACTCAGGCAAAAAAAATCGCCTTTTTc < 1:263671/140‑1 (MQ=255) tGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGGTCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGACTTGCTCACTCAGGCAAAAAAAATCGCCTTTTTCg > 1:503901/1‑140 (MQ=255) tGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGACTTGCTCACTCAGGCAAAAAAAATCGCCTTTTTCg > 1:810412/1‑140 (MQ=255) tGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGACTTGCTCACTCAGGCAAAAAAAATCGCCTTTTTCg > 2:86275/1‑140 (MQ=255) tGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGACTTGCTCACTCAGACAAAAAAAATCGCCTTTTTCg > 2:114972/1‑140 (MQ=255) tGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGACTTGCTCACTAAGGCAAAAAAAATCGc > 2:146126/1‑132 (MQ=255) tGACAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGACTTGCTCACTAAGGCAAAAAAAATCGc < 1:146126/132‑1 (MQ=255) aCAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGACTTGCTCACTCAGGCAAAAAAAATCGCCTTTTTCGGa > 1:1015440/1‑140 (MQ=255) aCAGCGCTGAATCATACACAGGGAAAATATTTGAGTCCGAAATGGCAACGCTTGATAATGTCCGTCATTCCCTGGATAAATCTGCCAACAACCGCACCGTCGACTTGCTCCCTCAGGCAAAAAAAATCGCCTTTTTCGGa < 1:694038/140‑1 (MQ=255) gcgcTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGACTTGCTCACTCAGGCAAAAAAAATCGCCTTTTTCGGATTa < 1:86275/140‑1 (MQ=255) | CGAACCGACGGTGAATCGTTTCTGTCGCAGCATGGACACGCGCGGTTTTCCTGATTTTAAACTTCATCTGGCACAGAGTCTGGCGAATGGCACTCCCTATGTTAATCGCAATGTCAATGAAGATGACAGCGTTGAATCATACACAGGGAAAATATTTGAGTCCGCAATGGCAACGCTTGATCATGTCCGTCATTCACTGGATAAATCTGCCATCAACCGCGCCGTCGACTTGCTCACTCAGGCAAAAAAAATCGCCTTTTTCGGATTA > NC_000913/1936792‑1937059 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |