| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,376,098 | T→C | D241G (GAC→GGC) | menB ← | 1,4‑dihydroxy‑2‑naphthoyl‑CoA synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,376,098 | 0 | T | C | 97.1% | 112.4 / NA | 34 | D241G (GAC→GGC) | menB | 1,4‑dihydroxy‑2‑naphthoyl‑CoA synthase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (24/9); minor base G (1/0); total (25/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCATGTAGAA‑CAGCATGGTGGCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGTCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCTTTTTCCAGATCCGCCAGCGGTACCACGGTGTTCACAAGGCCC > NC_000913/2375968‑2376226 | aTTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCATGTAGAA‑CAGCATGGTGGCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCgg > 1:972635/1‑140 (MQ=255) attttGCGGAAGCCGGGCTGACTTTTCGGGTGAAGGGCGTGGCG‑CCTTCCCGGCCCTTTTCCCTCATGTAAAACCAGCGGGGGGGGGTGCCCCGCCAGCCCCTGCCGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGc < 2:651278/138‑1 (MQ=255) cTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCATGTAGAA‑CAGCATGGTGGCGTTGCCCGCCAGCTCCTGCAGCGCCGCCTGGCCGGCAGAGTCGGCGTTCAGTGCAGCttt > 1:320694/1‑140 (MQ=255) aGGCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCATGTAGAA‑CAGCATGGTGGCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGgcagc > 1:26877/1‑140 (MQ=255) gCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCATGTAGAA‑CAGCATGGTGGCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGgcagcgc > 2:146151/1‑140 (MQ=255) gCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCATGTAGAA‑CAGCATGGTGGCGTTGCCCGCCAGCTCCTGCAGCCCCGCCT‑CCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGgcagcgca > 2:696842/1‑140 (MQ=255) aaGGCGTTGCGACCTTCCTGACCTTCTTCCGTCATGTAGAA‑CAGCATGGTGGCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGtt > 1:860021/1‑140 (MQ=255) ggCGTTGCGACCTTCCTGACCTTCTTCCGTCATGTAGAA‑CAGCATGGTGGCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGtttt > 1:507205/1‑140 (MQ=255) cccccTCCCTGCCTTTCTCCCGTAATTAAAAA‑CAGCTTGGGGGTGTCCCCCCCCACCTCCTGCGGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCAt < 2:972635/137‑1 (MQ=255) ccTGCCTTTCTCCCGTCTTGAAAAC‑CAGAGGGGGGGCGTGGCCCGCCGCCTCCTGCCCCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCgg < 2:860021/140‑1 (MQ=255) tcttcCGTCATGTAGAA‑CAGCATGGTGGCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGACACCAacg > 2:701399/1‑140 (MQ=255) tcttcCGTCATGTAGAA‑CAGCATGGTGGCGTTGCCCGCCAGCTCCTGCAGCCCCGCCT‑CCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAacgg < 1:696842/140‑1 (MQ=255) cttcCGTCATGTAGAA‑CAGCATGGTGGCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCACGGCACGAacgg > 2:942444/1‑140 (MQ=255) gTAGAA‑CAGCATGGTGGCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCtt > 1:66797/1‑140 (MQ=255) aa‑CAGCATGGTGGCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCTTTTTc > 2:793891/1‑140 (MQ=255) aa‑CAGCATGGTGGCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGAGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCTTTTTc > 2:58033/1‑140 (MQ=255) cATGGTGGCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCGGCAATTCTCGGCACCATCGGAAGGTTTCTTTTTCCAGAt > 2:311992/1‑140 (MQ=255) cATGGTGGCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCTTTTTCCAGAt > 2:978598/1‑140 (MQ=255) tggtggCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCTTTTTCCAGATcc > 2:546778/1‑140 (MQ=255) tggtggCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGGTGAGCAGCATTGGGCGTCACCAACGGACGGTTTCTTTATcaatttcc > 1:633583/1‑133 (MQ=255) tggCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCTTTTTCCAGATCCGcc > 2:932720/1‑140 (MQ=255) tggCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCTTTTTCCAGATCCGcc > 1:122100/1‑140 (MQ=255) tggCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTAGCGGCACTAACGGAAGGTTTCATTTTCCAGATCCGcc > 1:300710/1‑140 (MQ=255) gCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTCCAGCATTTCGCGTCACTTACGGACGATTTCATTTTCCAGTTCCGCCAg > 2:499593/1‑140 (MQ=255) gCGTTCCCCCCCGCCTCCTCCGACCCCGCCTCCCCCCCATAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCGGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCTTTTTCCAGATCCGCCAg < 2:320694/140‑1 (MQ=255) ttGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCTTTTTCCAGATCCGCCAGCgg > 1:224867/1‑140 (MQ=255) ttGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGCACGGTTTCTTTTTCCAGATCCGCCAGCgg > 1:376377/1‑140 (MQ=255) ccccAGCCCCTGCACCCCCGCCTGCGCGCTACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCTTTTTCCAGATCCGCCAGCGGTACCa < 1:311992/138‑1 (MQ=255) gcgcccccccCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCTTTTTCCAGATCCGCCAGCGGTACCACGGTGTTcaca < 2:224867/136‑1 (MQ=255) cacccccGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCTTTTTCCAGATCCGCCAGCGGTACCACGGTGTTCACaa < 1:152816/137‑1 (MQ=255) cAGCCCCGCCTGCCCTCCACAGTCGTCGTCCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCTTTTTCCAGATCCGCCAGCGGTACCACGGTGTTCACaa < 1:376215/140‑1 (MQ=255) cAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAAGGGACGGTTCCTTCTTCAAGATCCGCGAGCGTTACCACGGTGTTCACaa > 2:400331/1‑140 (MQ=255) cAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCTTTTTCCAGATCCGCCAGCGGTACCACGGTGTTCACaa < 1:978598/140‑1 (MQ=255) cAGCCCCGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCTTTTTCCAGATCCGCCAGCGGTACCACGGTGTTCACaa < 1:64925/140‑1 (MQ=255) ccGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCTTTTTCCAGATCCGCCAGCGGTACCACGGTGTTCACaa < 2:787398/135‑1 (MQ=255) ccGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCTTTTTCCAGATCCGCCAGCGGTACCACGGTGTTCACaa > 1:787398/1‑135 (MQ=255) ccGCCTGCCCGCCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCTTTTTCCAGATCCGCCAGCGGTACCACGGTGTTCACAAGGccc > 1:993560/1‑140 (MQ=255) | ATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCATGTAGAA‑CAGCATGGTGGCGTTGCCCGCCAGCTCCTGCAGCCCCGCCTGCCCGTCACAGTCGGCGTTCAGTGCAGCTTTCAGGCAGCGCAGCGCCATCGGGCTGTTTTGCAGCATTTCGCGGCACCAACGGACGGTTTCTTTTTCCAGATCCGCCAGCGGTACCACGGTGTTCACAAGGCCC > NC_000913/2375968‑2376226 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |