Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,499,137 T→C V156A (GTA→GCA)  ypdA → sensory histidine kinase YpdA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,499,1370TC98.5% 227.9 / NA 67V156A (GTA→GCA) ypdAsensory histidine kinase YpdA
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (35/30);  total (35/32)
Fisher's exact test for biased strand distribution p-value = 4.70e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATCCCCTGCTTTATCACCAGCATTCTGGCGGGTTGTATATCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGTAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCGAAAAAGAGGC  >  NC_000913/2499004‑2499269
                                                                                                                                     |                                                                                                                                    
aTCCCCTGCTTTATCACCAGCATTCTGGCGGGTTGTATATCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGt                                                                                                                                >  2:78750/1‑140 (MQ=255)
aTCCCCTGCTTTATCACCAGCATTCTGGCGGGTTGTATATCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGACATGTTGAGTGAGACGTTGACAATGATTCTGGCAATTGt                                                                                                                                >  2:319838/1‑140 (MQ=255)
 tCCCCTGCTTTATCACCAGCATTCTGGCGGGTTGTATATCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGTATGTTGTATGAGACGTCGACCTTGATTCTGGCAATTGTc                                                                                                                               >  2:404136/1‑140 (MQ=255)
     cTGCTTTATCACCAGCATTCTGGCGGGTTGTATATCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTggg                                                                                                                           <  1:100094/140‑1 (MQ=255)
      tGCTTTATCACCAGCTTTCTGGTGGGTTGTATATCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGc                                                                                                                          <  1:404136/140‑1 (MQ=255)
      tGCTTTATCACCAGCCTTCTGGCGGCTTGCATATCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGc                                                                                                                          <  1:290720/140‑1 (MQ=255)
      tGCTTTATCACCAGCATTCTGGCGGGTTGTATATCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGc                                                                                                                          <  1:574230/140‑1 (MQ=255)
        cTTTATCACCAGCATTCTGGCGCGTTGTATACCGGCCTGTATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCAc                                                                                                                        <  2:417853/140‑1 (MQ=255)
             tCACCAGCATTCTGGCGGGTTGTATATCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGAAGTTGACCATGATTCAGGCAATTGTCTGGGCACCAACt                                                                                                                   >  1:349728/1‑140 (MQ=255)
                  aGCATTCTGGCGGGTTGTATATCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCt                                                                                                                              <  2:691442/124‑1 (MQ=255)
                  aGCATTCTGGCGGGTTGTATATCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCt                                                                                                                              >  1:691442/1‑124 (MQ=255)
                  aGCATTCTGGCGGGTTGTATATCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCCGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACcgc                                                                                                              >  1:20291/1‑140 (MQ=255)
                  aGCATTCTGGCGGGTTGTATATAGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACcgc                                                                                                              >  2:59815/1‑140 (MQ=255)
                    cATTCTGGCGGGTTGTATATCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGt                                                                                                            >  1:719339/1‑140 (MQ=255)
                      ttCTGGCGGGTTGTATATCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTg                                                                                                          <  2:719339/140‑1 (MQ=255)
                      ttCTGGCGGGTTGTAGATCGGGTTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTg                                                                                                          <  1:388903/140‑1 (MQ=255)
                              ggTTGTATATCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGACAATTGTGTGGCCACCAACTACCGCGTTGGGGATCGa                                                                                                  >  1:371552/1‑140 (MQ=255)
                               gTTGTATATCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGat                                                                                                 >  2:867650/1‑140 (MQ=255)
                                 tGTATATCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGatat                                                                                               <  1:78750/140‑1 (MQ=255)
                                     tatCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGtc                                                                                           >  1:911870/1‑140 (MQ=255)
                                     tatCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGtc                                                                                           >  1:537883/1‑140 (MQ=255)
                                         gggCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTa                                                                                       >  1:555123/1‑140 (MQ=255)
                                          ggCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGGCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTaa                                                                                      >  1:186207/1‑140 (MQ=255)
                                             tGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGatat                                                                                               <  2:802042/128‑1 (MQ=255)
                                             tGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGatat                                                                                               >  1:802042/1‑128 (MQ=255)
                                             tGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAAt                                                                                   >  1:572281/1‑140 (MQ=255)
                                             tGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAAt                                                                                   >  1:936444/1‑140 (MQ=255)
                                               gATCAACCTGAAAATGCCCAAAACACAGCCCTGGCGCCTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAGATCg                                                                                 <  1:319838/140‑1 (MQ=255)
                                               gATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCg                                                                                 <  1:755943/140‑1 (MQ=255)
                                                aTCAACCTTAAAATCCCCAAAGTACAGCGCTAGCGCGTCTGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCgg                                                                                <  2:452443/140‑1 (MQ=255)
                                                aTCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCgg                                                                                <  1:134295/140‑1 (MQ=255)
                                                aTCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCgg                                                                                <  1:552506/140‑1 (MQ=255)
                                                 tCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGc                                                                               >  1:870566/1‑140 (MQ=255)
                                                  cAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCa                                                                              <  2:539462/140‑1 (MQ=255)
                                                   aaCCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCAt                                                                             <  1:59815/140‑1 (MQ=255)
                                                          aaaTCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATg                                                                      <  2:572281/140‑1 (MQ=255)
                                                             tCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATc                                                                   <  2:837717/140‑1 (MQ=255)
                                                               cccAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCt                                                                 >  1:731107/1‑140 (MQ=255)
                                                                       acaGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCg                                                         >  2:947460/1‑140 (MQ=255)
                                                                         aGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTc                                                       >  2:800156/1‑140 (MQ=255)
                                                                           cgcTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTg                                                     >  2:39662/1‑140 (MQ=255)
                                                                           cgcTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCCCTAAAATGGGCATTGCAATGAGCCTCGGTAGCGTCTg                                                     >  1:468833/1‑140 (MQ=255)
                                                                             cTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTa                                                   <  1:947460/140‑1 (MQ=255)
                                                                              tGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTAt                                                  <  2:186207/140‑1 (MQ=255)
                                                                              tGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTAt                                                  >  2:530698/1‑140 (MQ=255)
                                                                                gcgcGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCg                                                >  2:789408/1‑140 (MQ=255)
                                                                                 cgcgTCGGTATTCTCGGCGGCATGTTGTGTGTGACGTTGGCCATGATTTTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCgg                                               <  2:349728/140‑1 (MQ=255)
                                                                                              tcGGCGGCATGTTGTGTGAGACCTTGACCATTATTTTGGAAATTGTCTCGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCtt                                  <  2:371552/140‑1 (MQ=255)
                                                                                                ggcggcATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCt                                >  2:852292/1‑140 (MQ=255)
                                                                                                ggcggcATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCAGTATCGCCTTTATTGTGCTTCt                                >  1:420855/1‑140 (MQ=255)
                                                                                                 gcggcATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTg                               <  1:609259/140‑1 (MQ=255)
                                                                                                  cggcATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTgg                              >  1:923733/1‑140 (MQ=255)
                                                                                                   ggcATGTTGTGTGAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCAGTCCAATGATCCTAGGTCGCGTCTGTGTCGGGTTTATTGTGCTTCTGGt                             >  2:367721/1‑140 (MQ=255)
                                                                                                      gacaggtgtgAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCa                          <  2:582535/135‑1 (MQ=255)
                                                                                                             gtgAGACGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGtt                   <  1:650914/140‑1 (MQ=255)
                                                                                                                  aCGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAggg              >  2:550250/1‑140 (MQ=255)
                                                                                                                   cGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGCTCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGAAGCGTCTGCATCCGCTCTATTGTGCATCTGGTGCAAAGCGTTGAGGGc             >  2:428903/1‑140 (MQ=255)
                                                                                                                   cGTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGc             >  2:954625/1‑140 (MQ=255)
                                                                                                                    gTTGACCATGATTCTGGTAATTTTCTGGGCATCAATTACGGCGTTGGGTATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCg            <  2:286203/140‑1 (MQ=255)
                                                                                                                    gTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCg            <  1:878966/140‑1 (MQ=255)
                                                                                                                    gTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCg            <  1:840031/140‑1 (MQ=255)
                                                                                                                    gTTGACCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCg            <  2:20291/140‑1 (MQ=255)
                                                                                                                        aCCATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCGaaaa        >  1:562197/1‑140 (MQ=255)
                                                                                                                         ccATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCGaaaaa       <  2:833094/140‑1 (MQ=255)
                                                                                                                         ccATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCGaaaaa       <  2:936444/140‑1 (MQ=255)
                                                                                                                          cATGATTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCGAAAAag      >  1:52666/1‑140 (MQ=255)
                                                                                                                              aTTCTGGCAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCGAAAAAGAGGc  >  2:701582/1‑140 (MQ=255)
                                                                                                                                     |                                                                                                                                    
ATCCCCTGCTTTATCACCAGCATTCTGGCGGGTTGTATATCGGGCTGGATCAACCTGAAAATCCCCAAAGCACAGCGCTGGCGCGTCGGTATTCTCGGCGGCATGTTGTGTGAGACGTTGACCATGATTCTGGTAATTGTCTGGGCACCAACTACCGCGTTGGGGATCGATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCGAAAAAGAGGC  >  NC_000913/2499004‑2499269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: