| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,588,812 | C→T | E123E (GAG→GAA) | ugpC ← | sn‑glycerol 3‑phosphate ABC transporter ATP binding subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,588,812 | 0 | C | T | 98.3% | 193.6 / NA | 60 | E123E (GAG→GAA) | ugpC | sn‑glycerol 3‑phosphate ABC transporter ATP binding subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (24/34); minor base G (1/0); total (26/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.24e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTTGGCATCGAGGTTAGAGAGCGGCTCATCAAACAGGAACACCGCCGGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGCTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGTTCTGGAACACCATCGCAA > NC_000913/3588677‑3588948 | cTTGGCATCGAGGTTAGAGAGCGGCTCATCAAACAGGAACACCGCCGGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCa > 2:250957/1‑140 (MQ=255) aGGTTAGAGAGCGGCTCATCAAACAGGAACACCGCCGGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATgcgcgc > 1:243615/1‑140 (MQ=255) aGGTTAGAGAGCGGCTCATCAAACAGGAACACCGCCGGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATgcgcgc > 2:941725/1‑140 (MQ=255) gTTAGAGAGCGGCTCATCAAACAGGAACACCGCCGGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGcgccg < 1:956727/140‑1 (MQ=255) tAGAGAGCGGCTCATCAAACAGGAACACCGCCGGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGct > 2:843711/1‑140 (MQ=255) cGGCTCATCAAACAGGAACACCGCCGGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGGAGACCGTACAGGTCGAGAATGAGCGCCGCTTCTTTaa > 1:283918/1‑140 (MQ=255) cGGCTCATCAAACAGGAACACCGCCGGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTaa > 1:833997/1‑140 (MQ=255) cGGCTCATCAAACAGGAACACCGCCGGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTaa > 1:182130/1‑140 (MQ=255) cGGCTCATCAAACAGGAACACCGCCGGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTaa > 2:950118/1‑140 (MQ=255) gCTCATCAAACAGGAACACCGCCGGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAAcg < 1:536306/140‑1 (MQ=255) tcatcaAACAGGAACACCGCCGGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAAcgcg < 2:38487/140‑1 (MQ=255) tcatcaAACAGGAACACCGCCGGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAAcgcg < 2:616398/140‑1 (MQ=255) atcaAACAGGAACACCGCCGGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCTTCCAGTTACAGAATGCGCGCCGCTTCTTTAACGCGCt > 1:398870/1‑140 (MQ=255) atcaAACAGGAACACCGCCGGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCt > 1:671272/1‑140 (MQ=255) atcaAACAGGAACACCGCCGGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCt < 2:149077/140‑1 (MQ=255) acCGCCGGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTtgctg < 1:57621/140‑1 (MQ=255) cgccgGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTgctgct > 2:775014/1‑140 (MQ=255) cgccgGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTgctgct > 1:837954/1‑140 (MQ=255) ccgGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGATCCAGAATCCGCGCCGCGTCTTTAACGCGCATGGCAATTTGCTGCTTg > 2:499143/1‑140 (MQ=255) gATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGccc > 2:883509/1‑140 (MQ=255) cgcACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGcc > 1:452455/1‑140 (MQ=255) gcgGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGTTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCa < 2:875033/140‑1 (MQ=255) gcgGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCa < 1:250957/140‑1 (MQ=255) gCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGcc < 1:896172/140‑1 (MQ=255) cccATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGccc > 1:854807/1‑140 (MQ=255) cccATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGccc > 2:248321/1‑140 (MQ=255) cATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGccccc < 2:794382/140‑1 (MQ=255) tCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCAc < 1:843711/140‑1 (MQ=255) cacGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGcccc < 2:225363/131‑1 (MQ=255) cacGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGcccc > 1:225363/1‑131 (MQ=255) cacGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATg > 2:667775/1‑140 (MQ=255) cGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTCTCAGCCCCCACGCCATGtt < 2:837954/140‑1 (MQ=255) gcgcTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTttctt < 1:775014/140‑1 (MQ=255) gcgcTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTttctt < 1:256076/140‑1 (MQ=255) gcgcTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTttctt < 2:452455/140‑1 (MQ=255) cgcTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTttcttc < 2:243615/140‑1 (MQ=255) cTGACCGCCGGAAAGGTCGCGCCGGAGACTTTTGAGCGGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGa < 1:499143/140‑1 (MQ=255) cTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCTCACGCCATGTTTTCTTCGa < 2:592152/140‑1 (MQ=255) cTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGa < 1:680548/140‑1 (MQ=255) cTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGa < 2:854807/140‑1 (MQ=255) ccgccgGAAAGCTCGCGCGGGCCACGTTTGAACAGCCCGTCCAGTTCCTGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACt < 2:283918/140‑1 (MQ=255) cgccgGAAAGCTAGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGa < 2:997467/135‑1 (MQ=255) cgccgGAAAGCTAGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGa > 1:997467/1‑135 (MQ=255) cgGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCata < 2:505501/140‑1 (MQ=255) cgGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCata < 1:667775/140‑1 (MQ=255) cgGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCata < 2:833997/140‑1 (MQ=255) aGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTCCAGCCCCCACGCCATGGTTTCGTCGACACTCATATGCgg > 2:433377/1‑140 (MQ=255) cTCGCGCGGGCGACGTTTTAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGAt > 1:672473/1‑140 (MQ=255) cgcgcgGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCACCACGCCATGTATTCTTCGACGCTCATATGCGGATaa > 1:421063/1‑140 (MQ=255) cgcgcgGGCGACGTTTGAGCAGACC‑TCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATaaa > 1:503477/1‑140 (MQ=255) cgGGCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAgcg < 1:948471/140‑1 (MQ=255) ggCGACGTTTGAGCATACCGTCTAGATCCGGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGcgcg < 1:433377/140‑1 (MQ=255) ggCGACGTTTGAGCAGACCGTCCAGTTCCAGTATGTGCGTCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGcgcg < 2:398870/140‑1 (MQ=255) ggCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGcgcg < 1:877358/140‑1 (MQ=255) ggCGACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGcgcg < 2:511357/140‑1 (MQ=255) gACGTTTGAGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAg < 1:950118/140‑1 (MQ=255) aGCAGACCGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGTTCTGGaa < 2:182130/140‑1 (MQ=255) cGTCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACTCTCTTATGCGGATAAAGCGCGTAGTTCTGGAACACCATc > 2:364791/1‑140 (MQ=255) tCCAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGTTCTGGAACACCATCGc < 2:177451/140‑1 (MQ=255) cAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGGGCGTAGTTCCGGAACACCATCGCaa > 1:290760/1‑140 (MQ=255) cAGTTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGTTCTGGAACACCATCGCaa < 1:941725/140‑1 (MQ=255) | CTTGGCATCGAGGTTAGAGAGCGGCTCATCAAACAGGAACACCGCCGGATCGCGCACAATCGCGCGGCCCATCGCCACACGCTGGCGCTGACCGCCGGAAAGCTCGCGCGGGCGACGTTTGAGCAGACCGTCCAGCTCCAGAATGCGCGCCGCTTCTTTAACGCGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGTTCTGGAACACCATCGCAA > NC_000913/3588677‑3588948 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |