| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,278,421 | C→T | intergenic (‑355/‑58) | ryjA ← / → ghxP | small RNA RyjA/guanine/hypoxanthine transporter GhxP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,278,421 | 0 | C | T | 97.7% | 137.9 / NA | 44 | intergenic (‑355/‑58) | ryjA/ghxP | small RNA RyjA/guanine/hypoxanthine transporter GhxP |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (25/18); minor base G (0/1); total (25/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.32e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCTATGATCGCCGGATAATCGTTTGCTTTTTTTACCACCCGTTTTGTATGCGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGCAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGCGGTTCACTCGACGCCT‑GGTTTAAAATTTCACAACGTGGAAGCACTGTCCG > NC_000913/4278294‑4278555 | gCTATGATCGCCGGATAATCGTTTGCTTTTTTTACCACCCGTTTTGTATGCGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTcc < 2:614558/140‑1 (MQ=255) aTAATCGTTTGCTTTTTTTACCACCCGTTTTGTATGCGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGa > 2:32573/1‑140 (MQ=255) aTCGTTTGCTTTTTTTACCACCCGTTTTGTATGCGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGa < 1:964/140‑1 (MQ=255) tCGTTTGCTTTTTTTACCACCCGTTTTGTATGCGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGGAGATAACGCTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGaa > 2:385687/1‑140 (MQ=255) tCGTTTGCTTTTTTTACCACCCGTTTTGTATGCGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGc < 2:876154/124‑1 (MQ=255) tCGTTTGCTTTTTTTACCACCCGTTTTGTATGCGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGc > 1:876154/1‑124 (MQ=255) tttGCTTTTTTTACCACCCGTTTTGTATGCGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGAAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAAt > 1:811584/1‑140 (MQ=255) tGCTTTTTTTACCACCCGTTTTGTATGCGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGa < 1:1007665/134‑1 (MQ=255) tGCTTTTTTTACCACCCGTTTTGTATGCGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGa > 2:1007665/1‑134 (MQ=255) tGCTTTTTTTACCACCCGTTTTGTATGCGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACAAAAATTa > 1:571803/1‑140 (MQ=255) ttttACCACCCGTTTTGTATGCGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAActct < 2:194533/140‑1 (MQ=255) tACCACCCGTTTTGTATGCGCGCAGTTAATCGTTTGCCTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAg < 1:489871/140‑1 (MQ=255) gagacaggTTTTGTATGCGCGGAGCGAAATGTTTGCTGTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAgg < 1:483145/133‑1 (MQ=255) gTTTTGTATGCGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGtt < 2:215806/140‑1 (MQ=255) gTTTTGTATGCGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGtt > 1:861714/1‑140 (MQ=255) tGTATGCGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCt > 1:172370/1‑140 (MQ=255) gTATGCGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCtt < 1:32573/140‑1 (MQ=255) tGCGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATg < 1:1021161/140‑1 (MQ=255) gcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTAGACTAAAATTAAACTCCCAGGGTATGTTTTCtctgtctc > 2:483145/1‑133 (MQ=255) aGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCACAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGc > 2:35809/1‑140 (MQ=255) ttGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAAGTCTTAGGGGATGTTTTCTTATGACTACGCCATCAGcgcg > 2:458970/1‑140 (MQ=255) ttGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGcgcg > 2:575304/1‑140 (MQ=255) ttGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGcgcg > 1:548557/1‑140 (MQ=255) ttGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACcggtt > 2:42058/1‑138 (MQ=255) cGACGCAGTAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGCGGtt < 1:796453/140‑1 (MQ=255) aTTGTCGCAAACCTGGATCAGGCAGATAACGTTTCTCTGTTAGGGGATGGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGCGGTTCACTCGACGcc < 2:324892/140‑1 (MQ=255) aTTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGCGGTTCACTCGACGcc < 2:548557/140‑1 (MQ=255) tCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGCGGTTCACTCGACGCCT‑GGt > 1:603900/1‑140 (MQ=255) aaaCCTGGAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCAATCTGCGGGTACCGGCAGTTCTCTCGACGCCT‑GGtttta > 2:292820/1‑138 (MQ=255) ggAGCAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGTGGTCCACTCGACGGCT‑GGTTTAAAAtttt > 1:321814/1‑139 (MQ=255) cAGGAAGATAACGTTTCTCTGGGAGGGGATTGTCCACCAGGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGCGGTTCACTCGACGCCT‑GGTTTAAAATTTCACaa < 2:324795/140‑1 (MQ=255) cAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGTGGTTCACTCGACGCCT‑GGTTTAAAATTTCACaa < 2:811584/140‑1 (MQ=255) cAGGAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGCGGTTCACTCGACGCCT‑GGTTTAAAATTTCACaa < 1:35809/140‑1 (MQ=255) ggAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGCGGTACACTCGACGCCT‑GTGTTTAAATTTCACAACg > 2:466944/1‑140 (MQ=255) gAAGATAACGTTTCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGCGGTTCATCCGGCGCCT‑GGTTAAAAATTTCACAACGt > 1:329964/1‑140 (MQ=255) aCGTTTCGCTGGTAGTGGATTGCCCGCCAAGCATCTTTACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGCGGTTCACTCGACGCCT‑GGTTTAAAATTTCACAACGTGGAAGCa < 1:385687/140‑1 (MQ=255) aCGTTTCGCTGGTAGGGAATTGTCCGCCACGCATCGTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGCGGTTCACTCGACGCCT‑GGTTTAAAATTTCACAACGTGGAAGCa < 2:467113/140‑1 (MQ=255) tttCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGCGGTTCACTCTACGCCTGGGTTTAAAATTT‑ACAACCTGGAAGCACTg > 2:633162/1‑140 (MQ=255) tttCGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGCGGTTCACTCGACGCCT‑GGTTTAAAATTTCACAACGTGGAAGCACTg > 2:173156/1‑140 (MQ=255) ttCGCTGGTAGGGGATTGTCTGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGCGGTTCACTCGACGCCT‑GGTTTAAAATTTCACAACGTGGAAGCACTGt > 2:89226/1‑140 (MQ=255) ttCGCTGGTAGGGGAGTGTCCGGCAGGCATCTTGACGTAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGCGGTTCACTCGACGCCT‑GGTTTAAAATTTCACAACGTGGAAGCACTGt < 1:358286/140‑1 (MQ=255) cGCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGCGGTTCACTCGACGCCT‑GGTTTAAAAATTTACAACGTGGAAGCAACGTcc > 2:154581/1‑140 (MQ=255) gCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGCGGTTCACTCGACGCCT‑GGTTTAAAATTTCACAACGTGGGAGCACTGTccc > 1:617185/1‑139 (MQ=255) gCTGGTAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGCGGTTCACTCGACGCCT‑GGTTTAAAATTTCACAACGTGGAAGCACTGTCCg > 1:230579/1‑140 (MQ=255) | GCTATGATCGCCGGATAATCGTTTGCTTTTTTTACCACCCGTTTTGTATGCGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGCAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTATGTCTACGCCATCAGCGCGTACCGGCGGTTCACTCGACGCCT‑GGTTTAAAATTTCACAACGTGGAAGCACTGTCCG > NC_000913/4278294‑4278555 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |