Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 579,108 A→G intergenic (‑215/+76) borD ← / ← ybcV DLP12 prophage; prophage lipoprotein BorD/DLP12 prophage; protein YbcV

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913579,1080AG98.5% 468.0 / ‑3.1 133intergenic (‑215/+76)borD/ybcVDLP12 prophage; prophage lipoprotein BorD/DLP12 prophage; protein YbcV
Reads supporting (aligned to +/- strand):  ref base A (1/1);  new base G (68/62);  total (70/63)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01

Only 100 of 137 total aligned reads displayed.

AAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACACAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCA  >  NC_000913/578971‑579244
                                                                                                                                         |                                                                                                                                        
aaaTTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGcacgca                                                                                                                                        >  2:969104/1‑140 (MQ=255)
aaaTTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTATCCAGGCATAATTAAAAACGATGcacgca                                                                                                                                        >  1:361627/1‑140 (MQ=255)
          ttGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAgcg                                                                                                                              <  1:160590/140‑1 (MQ=255)
            tttAATATTTATTAATGTATGCCAAGTCAGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGcgcg                                                                                                                            <  1:756020/139‑1 (MQ=255)
             ttAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGt                                                                                                                           >  1:789756/1‑140 (MQ=255)
               aaTATTTATTAATGTGTGCCAGATGCGATGAATCGTCTTTGTATTCCCGGATTAGCTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGCGTGTCTGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTAc                                                                                                                         <  1:382080/140‑1 (MQ=255)
               aaTATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTAc                                                                                                                         <  1:513711/140‑1 (MQ=255)
               aaTATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTAc                                                                                                                         <  1:870554/140‑1 (MQ=255)
               aaTATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTAc                                                                                                                         <  1:947548/140‑1 (MQ=255)
               aaTATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTAc                                                                                                                         <  2:890450/140‑1 (MQ=255)
               aaTATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGATTTAGCGCGTAc                                                                                                                         >  2:626044/1‑140 (MQ=255)
               aaTATTTATTAATGTATGCCAGGTGCGATGAATCGACATTGTATTCCCTGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTAc                                                                                                                         <  2:336027/140‑1 (MQ=255)
               aaTATTTATTAATGTATCCCAGCTGCGATGATTCGCCATCGTATTCCCTGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTAc                                                                                                                         <  2:265392/140‑1 (MQ=255)
                 tatttattAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACAt                                                                                                                       <  2:731946/140‑1 (MQ=255)
                     tattaATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACAtgtat                                                                                                                   <  1:991424/140‑1 (MQ=255)
                      attaATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCTGGGAATAAATAAGAACAATGCACGCCGGGTCTAGCGCGTACAtgtatt                                                                                                                  >  2:268282/1‑140 (MQ=255)
                      attaATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACAtgtatt                                                                                                                  <  2:576110/140‑1 (MQ=255)
                      attaATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAAGTAAAAACTATGCACGCGGGGTCGAGCGCGTACAtgtatt                                                                                                                  >  2:498094/1‑140 (MQ=255)
                       ttaATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTa                                                                                                                          >  1:99608/1‑131 (MQ=255)
                       ttaATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTAc                                                                                                                         >  2:105786/1‑132 (MQ=255)
                       ttaATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTAc                                                                                                                         <  1:105786/132‑1 (MQ=255)
                       ttaATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACAtgtattg                                                                                                                 >  2:40029/1‑140 (MQ=255)
                       ttaATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATAAAAAACGATGCACGCAGGGTTTAGCGCGTACAtgtattg                                                                                                                 >  2:395195/1‑140 (MQ=255)
                          aTGTATGCCAGGTGCGAGGAATAGTCATTGTATTCCCGGCTTAACTATTTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACAtgtattgtat                                                                                                              <  2:417893/140‑1 (MQ=255)
                           tGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATgtattgtatt                                                                                                             >  2:978535/1‑140 (MQ=255)
                           tGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATgtattgtatt                                                                                                             >  1:828173/1‑140 (MQ=255)
                             tATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGATTAGCGCGTACATGTATTGtattat                                                                                                           >  1:450685/1‑140 (MQ=255)
                              aTGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATg                                                                                                          >  1:973602/1‑140 (MQ=255)
                               tGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATTCACGCAGGGTTTAGAGCGTACTTGTATTGTATTATGc                                                                                                         >  1:494232/1‑140 (MQ=255)
                               tGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGc                                                                                                         >  1:63496/1‑140 (MQ=255)
                               tGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGc                                                                                                         <  1:661091/140‑1 (MQ=255)
                               tGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGc                                                                                                         >  2:787633/1‑140 (MQ=255)
                               tGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGc                                                                                                         >  2:771992/1‑140 (MQ=255)
                               tGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGc                                                                                                         >  1:152371/1‑140 (MQ=255)
                               tGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGc                                                                                                         >  1:727055/1‑140 (MQ=255)
                               tGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGc                                                                                                         >  1:561850/1‑140 (MQ=255)
                               tGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGc                                                                                                         >  1:193052/1‑140 (MQ=255)
                                gCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGcc                                                                                                        <  1:969104/140‑1 (MQ=255)
                                gCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGcc                                                                                                        >  1:847498/1‑140 (MQ=255)
                                    ggTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAaca                                                                                                    >  1:835394/1‑140 (MQ=255)
                                    ggTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAaca                                                                                                    <  2:223513/140‑1 (MQ=255)
                                     gTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACAtgtat                                                                                                                   >  1:915686/1‑124 (MQ=255)
                                     gTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACAtgtat                                                                                                                   <  2:915686/124‑1 (MQ=255)
                                     gTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAacac                                                                                                   >  2:525801/1‑140 (MQ=255)
                                     gTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAacac                                                                                                   >  1:177231/1‑140 (MQ=255)
                                     gTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAacac                                                                                                   >  2:929039/1‑140 (MQ=255)
                                     gTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAacac                                                                                                   >  1:252421/1‑140 (MQ=255)
                                     gTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAacac                                                                                                   >  1:812309/1‑140 (MQ=255)
                                     gTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACACAGGGTTTAGCGCGTACATGTATTGtattat                                                                                                           >  2:702904/1‑132 (MQ=255)
                                     gTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACACAGGGTTTAGCGCGTACATGTATTGtattat                                                                                                           <  1:702904/132‑1 (MQ=255)
                                      tGCGATGAATCGTCATTTTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACAcc                                                                                                  >  2:582740/1‑140 (MQ=255)
                                       gCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCCCGTACATGTATTGTATTATGCCAACAccc                                                                                                 >  1:393022/1‑140 (MQ=255)
                                          aTGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCgg                                                                                              >  2:781174/1‑140 (MQ=255)
                                          aTGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCgg                                                                                              >  2:535661/1‑140 (MQ=255)
                                          aTGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTATAGCGCGTACACGTATTGTATGATACCAACACCCCgg                                                                                              >  1:306015/1‑140 (MQ=255)
                                           tGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGt                                                                                             <  2:923157/140‑1 (MQ=255)
                                             aaTCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGc                                                                                           <  1:525801/140‑1 (MQ=255)
                                                  tCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGaca                                                                                      >  2:692680/1‑140 (MQ=255)
                                                  tCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGaca                                                                                      >  1:698499/1‑140 (MQ=255)
                                                      tGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGga                                                                                  <  1:978535/140‑1 (MQ=255)
                                                       gTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTTGCGCGTACATGTGTTGTATTATGCCAACACACCGGTGCTGACACGgaa                                                                                 >  2:442999/1‑140 (MQ=255)
                                                             ccGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAAcc                                                                           >  1:1021048/1‑140 (MQ=255)
                                                                gATTAACTATGTCCACATCCCTAACGGGGAACTTCGCTGCGGGAGTGTACGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATACCAACACCCCGGTGCTGACACGGAAGAAACCGGa                                                                        <  2:306015/140‑1 (MQ=255)
                                                                           tCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGAttt                                                             >  2:192111/1‑140 (MQ=255)
                                                                           tCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGAttt                                                             >  1:981564/1‑140 (MQ=255)
                                                                                aGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGt                                                        >  1:915986/1‑140 (MQ=255)
                                                                                 gCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTg                                                       >  1:749459/1‑140 (MQ=255)
                                                                                 gCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTg                                                       >  1:761799/1‑140 (MQ=255)
                                                                                   ccTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGa                                                     <  1:692680/140‑1 (MQ=255)
                                                                                   ccTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGa                                                     <  2:238181/140‑1 (MQ=255)
                                                                                     tGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACGCCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGaaa                                                   <  1:946001/140‑1 (MQ=255)
                                                                                     tGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGaaa                                                   <  1:192111/140‑1 (MQ=255)
                                                                                       aCGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAGACCAGAGGTTATGTTTTAGCGTGGAAAGa                                                 >  1:327142/1‑140 (MQ=255)
                                                                                       aCGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGa                                                 >  1:908757/1‑140 (MQ=255)
                                                                                            gAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTtgt                                            >  1:515081/1‑140 (MQ=255)
                                                                                            gAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTtgt                                            >  2:233029/1‑140 (MQ=255)
                                                                                            gAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTtgt                                            >  2:38477/1‑140 (MQ=255)
                                                                                            gAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTtgt                                            >  1:590908/1‑140 (MQ=255)
                                                                                             aaCTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGT‑‑TGATTTAGCGTGGAAAGATTTGTGTa                                         <  2:177231/140‑1 (MQ=255)
                                                                                                 tctcTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAgt                                       >  2:802974/1‑140 (MQ=255)
                                                                                                 tctcTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAgt                                       >  2:710679/1‑140 (MQ=255)
                                                                                                 tctcTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAgt                                       >  2:527391/1‑140 (MQ=255)
                                                                                                  ctctGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGa                                                     >  2:901807/1‑125 (MQ=255)
                                                                                                          gAGTGTCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAAt                              >  1:140317/1‑140 (MQ=255)
                                                                                                            gtgtCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGc                            <  1:233029/140‑1 (MQ=255)
                                                                                                             tgtCCGGGAATAATTATAAACGATGCACGCAGGTTTTAGAGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGct                           <  2:494232/140‑1 (MQ=255)
                                                                                                              gtCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGctc                          <  1:700476/140‑1 (MQ=255)
                                                                                                               tCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGctct                         <  1:584645/140‑1 (MQ=255)
                                                                                                               tCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGctct                         <  1:40029/140‑1 (MQ=255)
                                                                                                               tCCGGGAATAATTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATATAGCGTGGAAAAATTTGTGTAGTGTTCTGAATGctct                         >  1:316519/1‑140 (MQ=255)
                                                                                                                 cGGGAATAATTAAAATCGATGCGCGTAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCa                       <  1:442999/140‑1 (MQ=255)
                                                                                                                         atTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTaaa                  >  2:574544/1‑137 (MQ=255)
                                                                                                                         atTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTaaa                  <  1:574544/137‑1 (MQ=255)
                                                                                                                         atTAAAAACGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGAAAAGACTAGTGTAGTGTTCTGTCTGCTCTCAGTAAATAg               >  2:466252/1‑140 (MQ=255)
                                                                                                                                aCGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGaa        <  2:835394/140‑1 (MQ=255)
                                                                                                                                aCGATGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGaa        <  1:251025/140‑1 (MQ=255)
                                                                                                                                    tGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTAt    >  2:796197/1‑140 (MQ=255)
                                                                                                                                    tGCACGCAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTAt    >  1:39527/1‑140 (MQ=255)
                                                                                                                                     gCACGCAGGGTTTAGCGAGTACGTGTATTGTCTTATGCCGACACCCCGCTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATc   <  2:316519/140‑1 (MQ=37)
                                                                                                                                      cacgcaGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCa  <  1:56166/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
AAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAACTTCTCTGCGGGAGTGTCCGGGAATAATTAAAAACGATGCACACAGGGTTTAGCGCGTACATGTATTGTATTATGCCAACACCCCGGTGCTGACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCA  >  NC_000913/578971‑579244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: