Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	938,898	A→G	D302G (GAC→GGC)	rarA →	recombination factor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	938,898	0	A	G	100.0%	163.4 / NA	48	D302G (GAC→GGC)	rarA	recombination factor
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (26/22);  total (26/22)

TGCATAAGTCGGTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAC  >  NC_000913/938778‑939034                                                                                                                         |                                                                                                                                         tGCATAAGTCGGTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCa                                                                                                                       >  2:247969/1‑140 (MQ=255)       aGTCGGTACGTGGTACCGCACCCGAGGCGCCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCg                                                                                                                 <  1:500661/140‑1 (MQ=255)          cGGTACGTGGTAGCGCACCCGATGTGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATg                                                                                                              <  1:48084/140‑1 (MQ=255)          cGGTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATg                                                                                                              <  1:553371/140‑1 (MQ=255)           ggTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGc                                                                                                             >  2:517055/1‑140 (MQ=255)           ggTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGCTAATGCCGATCCACGGCCGATGc                                                                                                             >  2:679253/1‑140 (MQ=255)           ggTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCATCTGAAGGCGTAGGTAATGCCGATCCACGGGCGATGc                                                                                                             >  1:312966/1‑140 (MQ=255)             tACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAg                                                                                                           >  1:171865/1‑140 (MQ=255)             tACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAg                                                                                                           >  2:994978/1‑140 (MQ=255)             tACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAg                                                                                                           >  1:737977/1‑140 (MQ=255)                  ggTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGc                                                                                                      >  2:617027/1‑140 (MQ=255)                       cgcACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTg                                                                                                 >  2:605602/1‑140 (MQ=255)                           cccGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAAAGCCCATCCACGGGCGATCCAGGTGGCAATTGCGGc                                                                                             >  2:345405/1‑140 (MQ=255)                                tGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTggg                                                                                        <  1:617027/140‑1 (MQ=255)                                                tATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGt                                                                        <  1:517055/140‑1 (MQ=255)                                                  tGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTg                                                                      >  1:600988/1‑140 (MQ=255)                                                    cgcgAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGc                                                                    >  1:758933/1‑140 (MQ=255)                                                    cgcgAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGc                                                                    <  1:78518/140‑1 (MQ=255)                                                    cgcgAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGc                                                                    >  1:80511/1‑140 (MQ=255)                                                    cgcgAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGc                                                                    >  2:832864/1‑140 (MQ=255)                                                    cgcgAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGc                                                                    >  2:531263/1‑140 (MQ=255)                                                    cgcgAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGc                                                                    >  2:78518/1‑140 (MQ=255)                                                    cgcgAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGAGGCAATTGCGGACTGGGATTGATTTACTCGCGTTGGc                                                                    >  1:425099/1‑140 (MQ=255)                                                          ttattaCCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCcggcg                                                              <  2:758933/140‑1 (MQ=255)                                                           tattaCCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCcggcgg                                                             <  2:950546/140‑1 (MQ=255)                                                              taCCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAg                                                          <  1:994978/140‑1 (MQ=255)                                                                   cTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGaa                                                     <  2:931209/140‑1 (MQ=255)                                                                   cTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGaa                                                     <  2:600988/140‑1 (MQ=255)                                                                     ggtggCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAAcg                                                   >  2:761763/1‑140 (MQ=255)                                                                                   atatGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAgg                                     <  2:80511/140‑1 (MQ=255)                                                                                      tGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGa                                  <  1:626475/140‑1 (MQ=255)                                                                                      tGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGa                                  <  1:531263/140‑1 (MQ=255)                                                                                       gTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGAt                                 >  2:131860/1‑140 (MQ=255)                                                                                         cgcgcgTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTg                               >  1:656858/1‑140 (MQ=255)                                                                                         cgcgcgTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTg                               >  2:2254/1‑140 (MQ=255)                                                                                         cgcgcgTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTg                               >  2:877953/1‑140 (MQ=255)                                                                                           cgcgTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCa                                              >  1:115973/1‑123 (MQ=255)                                                                                           cgcgTCGCTGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCa                                              <  2:115973/123‑1 (MQ=255)                                                                                                   tGTCTGGCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGc                     <  2:50100/140‑1 (MQ=255)                                                                                                        ggCGATTGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTgcg                >  1:987054/1‑140 (MQ=255)                                                                                                             ttGCGTCTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCa           <  2:171865/140‑1 (MQ=255)                                                                                                                   cTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCaaaa        <  2:739161/137‑1 (MQ=255)                                                                                                                   cTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCaaaa        <  2:531164/137‑1 (MQ=255)                                                                                                                   cTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCaaaa        >  1:531164/1‑137 (MQ=255)                                                                                                                   cTGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCaaaa        >  1:739161/1‑137 (MQ=255)                                                                                                                    tGAAGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCa    <  1:761763/140‑1 (MQ=255)                                                                                                                      aaGGCGTCGGTAATGTCGATCCTCGCGCGCTGCAGGTCGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc  <  1:345405/140‑1 (MQ=255)                                                                                                                      aaGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCCATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc  <  2:656858/140‑1 (MQ=255)                                                                                                                      aaGGCGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc  <  1:832864/140‑1 (MQ=255)                                                                                                                         |                                                                                                                                         TGCATAAGTCGGTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAC  >  NC_000913/938778‑939034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑