| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,062,547 | A→G | intergenic (+149/+3) | torD → / ← cbpM | trimethylamine‑N‑oxide reductase‑specific chaperone/chaperone modulator CbpM |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,062,547 | 0 | A | G | 97.1% | 118.0 / NA | 36 | intergenic (+149/+3) | torD/cbpM | trimethylamine‑N‑oxide reductase‑specific chaperone/chaperone modulator CbpM |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (20/14); total (20/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGT > NC_000913/1062413‑1062670 | cTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCa < 2:734852/140‑1 (MQ=255) aCGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAg > 2:212823/1‑140 (MQ=255) aGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCg < 2:154334/140‑1 (MQ=255) cgcAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCgcagca > 1:1002667/1‑140 (MQ=255) cgcAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCgcagca < 1:64118/140‑1 (MQ=255) cAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAgg < 2:1002667/140‑1 (MQ=255) aGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCgcagca > 1:177050/1‑137 (MQ=255) aGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCgcagca < 2:177050/137‑1 (MQ=255) ttGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACACACCAGGGAAGCCGGTGGCGCAGCAGGCgg > 1:275616/1‑140 (MQ=255) cGGATGCGGCGTGAACGGCTTATCCGGCCCACAGGAACTCTAATCTTTCTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGtttt < 2:368813/140‑1 (MQ=255) cGGATGCGGCGTGAACGCCTTATCCGGCCCACAGGTACTTTAATCTTTTTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGtttt < 2:275616/140‑1 (MQ=255) gcgTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTc < 1:931304/140‑1 (MQ=255) gAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGt < 1:654735/140‑1 (MQ=255) aaCGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTg > 1:178419/1‑140 (MQ=255) ttATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAat > 1:27764/1‑140 (MQ=255) cGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATatcat < 2:27764/140‑1 (MQ=255) gCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGGTTTACTACTTCAGATGCGCAATATCATcc > 1:483256/1‑140 (MQ=255) cccACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTgcg > 2:37310/1‑128 (MQ=255) cccACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTgcg < 1:37310/128‑1 (MQ=255) cccACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCAGCTGGCGCGGCAAGCGCTTTTCCTGGTTCACGTGCGCAATATCATCCa > 2:396797/1‑140 (MQ=255) aTCTTTGTAGACCGGTTAAGATCCGCCATCGCATCCGTCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCa < 1:396797/140‑1 (MQ=255) gTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAAGATCGTCCATTAACCTCAGCGCCACCGCGa > 1:325680/1‑140 (MQ=255) cGGTTAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGCTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCg > 2:973548/1‑140 (MQ=255) gTTAAGATGCGTCATCGCATCCCGCAAACACCCATAACGGATGAGCTAAAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGc < 2:379876/140‑1 (MQ=255) gTTAAGATGCGTCATCGCATCCCGCAAACACACATCACGCATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGc < 2:262053/140‑1 (MQ=255) ttAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAGTATCATCCATTAACGTGAGCGGCACCGCGATCCCCGGcc > 2:397579/1‑140 (MQ=255) ttAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGcc > 2:652059/1‑140 (MQ=255) ttAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGcc < 1:212823/140‑1 (MQ=255) ttAAGATGCGTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGcc > 2:768610/1‑140 (MQ=255) gTCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCagag > 2:511362/1‑140 (MQ=255) tCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGc < 2:205644/129‑1 (MQ=255) tCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGc > 1:205644/1‑129 (MQ=255) tCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGc > 1:233867/1‑140 (MQ=255) tCATCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGGGCGCAACATCATCCAATAAGGACCGCGCCACCGCGATCCCCGGCCAATCCAGAGc > 2:458250/1‑140 (MQ=255) tCGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAg > 2:91039/1‑140 (MQ=255) cGCATCCGGCAAACACGCATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGt > 2:848370/1‑140 (MQ=255) | CTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGT > NC_000913/1062413‑1062670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |