| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,405,078 | T→C | V113A (GTC→GCC) | abgR → | putative LysR‑type DNA‑binding transcriptional regulator AbgR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,405,078 | 0 | T | C | 97.9% | 161.9 / NA | 47 | V113A (GTC→GCC) | abgR | putative LysR‑type DNA‑binding transcriptional regulator AbgR |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (19/27); minor base A (0/1); total (19/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTATCAGCACGCCAGTCTAATTCTTGAAGAGCTGCGCGCAGCCCAAGAGGATATTCGCCAACGACAAGGGCAACTGGCAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGTCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGGAGAATTGGATTTCACCATCAATACCTATTATCAGGGACCGTACGAC > NC_000913/1404944‑1405214 | ttATCAGCACGCCAGTCTAATTCTTGAAGAGCTGCGCGCAGCCCAAGAGGATATTCGCCAACGACAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCatat > 2:200736/1‑140 (MQ=255) tCTAATTCTTGAAGAGCTGCGCGCAGCCCAAGAGGATATTCGCCAACGACAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATcagc > 2:878314/1‑140 (MQ=255) ttCTTGAAGAGCTGCGCGCAGCCCAAGAGGATATTCGCCAACGACAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCAt > 1:70138/1‑140 (MQ=255) cTTGAAGAGCTGCGCGCAGCCCAAGAGGATATTCGCCAACGACAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATcc < 1:1021969/140‑1 (MQ=255) cTTGAAGAGCTGCGCGCAGCCCAAGAGGATATTCGCCAACGACAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATcc < 2:85139/140‑1 (MQ=255) cTTGAAGAGCTGCGCGCAGCCCAAGAGGATATTCGCCAACGACAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATcc < 2:232288/140‑1 (MQ=255) tGAAGAGCTGCGCGAAAACCAATAGGATATTTGGCGACGTCAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGc < 2:464281/140‑1 (MQ=255) agCTGCGCGCAGCCCGAGAGGAAATACGCTAACGACAGGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTa < 1:433619/140‑1 (MQ=255) cgcgcAGCCCAAGAGGATATTCGCCAACGACAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGt < 1:975078/140‑1 (MQ=255) gcgcAGCCCAAGAGGCTATTCGTCATCGACAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTa < 1:480035/140‑1 (MQ=255) gcAGCCCAAGAGGATATTCGCCAACGACAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACg < 1:878314/140‑1 (MQ=255) aGCCCAAGAGGATATTCGCCAACGACAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCa > 2:111820/1‑140 (MQ=255) agagGATATTCGCCAACGACAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATgg < 2:543174/140‑1 (MQ=255) gagGATATTCGCCAACGACAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGa < 1:200736/140‑1 (MQ=255) ggATATTCGCCAACGACAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCATGTAAAATTACGCATTATGGAAg > 1:353929/1‑140 (MQ=255) tatTCGCCAACGACAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGc > 2:723447/1‑140 (MQ=255) tatTCGCCAACGACAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGc > 1:956276/1‑140 (MQ=255) tatTCGCCAACGACAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGc > 1:695589/1‑140 (MQ=255) tatTCGCCAACGACAAGGGCAACTGGTAGGGCAGATTAATATCGGCAT‑GGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGGAGCATCCTCAGCTAGAAGTACTCATTATGGAAGGGCa > 1:320950/1‑140 (MQ=255) ttCGCCAACGACAAGGGCAACTGGTAGGGCAGATTAATAACGGCATGGTGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCaa < 2:339010/140‑1 (MQ=255) tCGCCAACGACAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAAc < 2:888998/140‑1 (MQ=255) ccAACGACAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCACCCGCAGGGAAAAGTGCGCATTATGGAAGGGCAACTgg > 1:297178/1‑140 (MQ=255) aCAAGGGCACCTGGTAGGGCAATTTAATATGTGCAT‑GGGTCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCgat < 2:320950/140‑1 (MQ=255) cAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCgat < 2:685739/140‑1 (MQ=255) cAAGGGCAACTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCgat < 2:695589/140‑1 (MQ=255) aCTGGTAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATg > 1:820921/1‑140 (MQ=255) ggcagATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAAt > 2:153232/1‑135 (MQ=255) ggcagATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAAt < 1:153232/135‑1 (MQ=255) ttAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGga > 1:251021/1‑140 (MQ=255) atatCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGGAGaa < 2:197977/140‑1 (MQ=255) atatCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGGAGaa < 1:530748/140‑1 (MQ=255) ggCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGGAGAATTGGa < 2:107401/140‑1 (MQ=255) ggCATGGGGGCCAGTATATCCCTCAGTCTGACGCCAGCTGCCATATCTTGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGGAGAATTGGa < 2:304612/140‑1 (MQ=255) gCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGACGGGCAACTTGTGACGACGATTAATGAATTGGGTCAGGGAGAATTGGAt > 2:346278/1‑140 (MQ=255) gCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGGAGAATTGGAt > 1:626517/1‑140 (MQ=255) aTGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGGAGAATTGGAttt > 2:110620/1‑140 (MQ=255) tGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGGAGAATTGGATTTc < 1:723447/140‑1 (MQ=255) cAGTATTTCCCGCAGTCGGATGGCAGCTGCCGTATTTCGCTTTCATCATCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGGAGAATTGGATTTCACCATCa < 2:353929/140‑1 (MQ=255) aGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGGAGAATTGGATTTCACCATCaa < 2:70138/140‑1 (MQ=255) aGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGGAGAATTGGATTTCACCATCaa < 1:110620/140‑1 (MQ=255) aGTATTTCCCGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGGAGAATTGGATTTCACCATCaa > 2:105846/1‑140 (MQ=255) tCCCGCAGTCTGATGTCAGCTGCCATATCGCGTTTTCTTCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGGAGAATTGGATTTCACCATCAATTCCta < 1:346278/140‑1 (MQ=255) tCCCGCAGTCTGATGTCAGCTGACATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGGAGAATTGGATTTCACCATCAATACCta < 1:415760/140‑1 (MQ=255) cccGCAGTCTGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGGAGAATTGGATTTCACCATCAATACCtat < 2:14020/140‑1 (MQ=255) tGATGCCAGCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGGATAATTGGATTTCACCATCAATACCTATTATCAGGGa < 2:956276/140‑1 (MQ=255) gCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGGAGAATTGGATTTCACCATCAATACCTATTATCAGGGACCGTACGa > 2:599632/1‑140 (MQ=255) gCTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTAGTGTCGATGATTAATGAATTGCGTCAGGGAGAATTGGATTTCACCATCAATACCTATTATCAGGGACCGTACGa > 1:617125/1‑140 (MQ=255) cTGCCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGGAGAATTGGATTTCACCATCAATACCTATTATCAGGGACCGTACGAc < 2:991135/140‑1 (MQ=255) | TTATCAGCACGCCAGTCTAATTCTTGAAGAGCTGCGCGCAGCCCAAGAGGATATTCGCCAACGACAAGGGCAACTGGCAGGGCAGATTAATATCGGCATGGGGGCCAGTATTTCCCGCAGTCTGATGCCAGCTGTCATATCTCGTTTTCATCAGCAGCATCCGCAGGTAAAAGTACGCATTATGGAAGGGCAACTGGTGTCGATGATTAATGAATTGCGTCAGGGAGAATTGGATTTCACCATCAATACCTATTATCAGGGACCGTACGAC > NC_000913/1404944‑1405214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |