| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,680,973 | A→G | intergenic (+34/‑3) | ydgI → / → folM | putative arginine:ornithine antiporter/dihydromonapterin reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,680,973 | 0 | A | G | 95.1% | 206.9 / NA | 61 | intergenic (+34/‑3) | ydgI/folM | putative arginine:ornithine antiporter/dihydromonapterin reductase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (27/31); minor base T (2/1); total (29/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCATACCCATGATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAACGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCATTTCATTAATCAAAAGCAACCGGTGATTGTCAGCTATCGGACACACTATCCAGCCATTG > NC_000913/1680842‑1681108 | cGCATACCCATGATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGt < 1:681554/140‑1 (MQ=255) gCATACCCATGATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCGTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTa < 2:97637/140‑1 (MQ=255) gCATACCCATGATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTa < 1:745485/140‑1 (MQ=255) gCATACCCATGATAATGTACTGAACCGTCAGGAAAGGGTGCTGATTGGGATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTa < 2:398051/140‑1 (MQ=255) cccATGATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAAcc < 1:899396/140‑1 (MQ=255) cccATGATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGCATAGCAAAGGAGATATCGATGGGTAAAAcc < 2:638152/140‑1 (MQ=255) gATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGcc < 1:167071/140‑1 (MQ=255) gATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGcc < 1:760821/140‑1 (MQ=255) tGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGGTAGTAAATGAGATAGCAATGGGTAAAACCCAGCCCTTGc > 2:307425/1‑140 (MQ=255) gTACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGcc < 2:90701/140‑1 (MQ=255) gTACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGcc > 2:788036/1‑140 (MQ=255) tACTGAACCGTCAGGCAATGGTCCTAATTAGCATGCTATTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCa < 1:307425/140‑1 (MQ=255) tACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCa < 1:788036/140‑1 (MQ=255) tGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATATCGAAGGTTAAAACACAGCCCTTGCCAata > 1:330173/1‑140 (MQ=255) tGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATATCGAAGGGTAAAACCCAGCCCTTGCCAata > 1:393685/1‑140 (MQ=255) aaCCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGcc < 2:769364/128‑1 (MQ=255) aaCCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGcc > 1:769364/1‑128 (MQ=255) aaCCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATatt > 1:101361/1‑140 (MQ=255) aaCCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATatt > 1:343124/1‑140 (MQ=255) aaCCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAAATAGCGATGGGTGAAACACAGCCCTTGCCAATatt > 2:339774/1‑140 (MQ=255) aCCGTCAGGAAATGGTGGTGATTGGCATGCTCTTACTTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATatta < 2:269623/140‑1 (MQ=255) ccGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATattaa > 2:135118/1‑140 (MQ=255) tCAGGAAATGGTGCTGATTGGCTTGCTGTTAATTGTCTCAGTTCCGGCTACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATattaatta < 2:330173/140‑1 (MQ=255) tCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATattaatta > 2:921573/1‑140 (MQ=255) tCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATattaatta < 2:101361/140‑1 (MQ=255) gAAATGGTGCTGATTTGCATGCCGTCAATCGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTgg < 1:339774/140‑1 (MQ=255) tGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGa < 2:343124/140‑1 (MQ=255) tGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGgtcgt > 1:906660/1‑140 (MQ=255) gATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGgtcgtc > 2:579689/1‑140 (MQ=255) tGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCa < 1:579689/140‑1 (MQ=255) tGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGcctc > 1:853157/1‑140 (MQ=255) tAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGcctcgcc < 1:45405/140‑1 (MQ=255) tAATTGCCTCAGTTCCGCCGACCTGGATGCTCGTGTGATCACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGcctcgcc < 2:257949/140‑1 (MQ=255) ccTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAACTACTGGCCGAGCTCTTCGCATAGGCCTCGCCCTCGCa > 1:425024/1‑140 (MQ=255) cTCAGTTCCGGCGACCTGGATGCTGGTGGGGTAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCAt > 1:47991/1‑140 (MQ=255) cTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCAt > 2:588257/1‑140 (MQ=255) cTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATCACTGGCGTAGGACGACGCATCAGCCTCGCCCTCGCAt > 1:476595/1‑140 (MQ=255) cAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCTATATTAATAACTGGCGGAAGACGTCTCATCGGCCTCGCCGTCGCATgg > 2:492096/1‑140 (MQ=255) cAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATgg > 1:662018/1‑140 (MQ=255) gTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCa < 1:859005/140‑1 (MQ=255) gTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCa < 1:157673/140‑1 (MQ=255) ggCGACCTGGATGCTGGTGGGAAAACGTTCAACCCTTCGCTGGATAGCTAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCATTTCa < 2:393685/140‑1 (MQ=255) aCCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCATTTCATTaa > 2:161687/1‑140 (MQ=255) tGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTAGCATGGCATTTCATTAATCa < 2:906660/140‑1 (MQ=255) cTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCATTTCATTAATCAAAAGCa < 1:795824/140‑1 (MQ=255) ggtggGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCATCGCATGGCATTTCATTAATCAAAAGCAAc > 1:153783/1‑140 (MQ=255) gggATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCATCGCATGGCATTTCATTAATCAAAAGCAACCgg < 2:153783/140‑1 (MQ=255) ggATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCATTTCATTAATCAAAAGCAACCggg > 2:807464/1‑139 (MQ=255) ggATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCATTTCATTAATCAAAAGCAACCGGt < 1:686971/140‑1 (MQ=255) gATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCATTACATTAATCAAAAGCAACCGGTg > 2:430302/1‑140 (MQ=255) tCATCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCATTTCATTAATCAAAAGCAACCGGTGATTGTCAg < 2:9743/140‑1 (MQ=255) aTCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCATTTCATTAATCAAAAGCAACCGGTGATTGTCAGCt < 2:662018/140‑1 (MQ=255) tCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCATTTCATTAATCAAAAGCAACCGGTGATTGt < 1:220620/134‑1 (MQ=255) tCCCATCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCATTTCATTAATCAAAAGCAACCGGTGATTGt > 2:220620/1‑134 (MQ=255) aTCGTTGGATAGCAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCATTTCATTAATCAAAAGCAACCGGTGATTGTCAGCTATCgg > 1:744176/1‑140 (MQ=255) cAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCATTTCATTAATCACAAGAAACCGGTGATTGTCAGCGATCGGACACACTATCCa > 2:357448/1‑140 (MQ=255) cAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCATCTCATTAATCAAAAGCAACCGGTGATTGTCAGCTATCGGACACACTATCCa > 1:540187/1‑140 (MQ=255) cAAAGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCAACGGCCTCGCCCTCGCATGGCATTTCATTAATCAAAAGCAACCGGTGATTGTCAGCTATCGGACACACTATccc > 2:798354/1‑139 (MQ=255) aaGGAGATAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCATTTCATTAATCAAAAGCAACCGGTGATTGTCAGCTATCGGACACACTATCCAGc < 1:161687/140‑1 (MQ=255) gagaTAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCATTTCATTAATCAAAAGCAACCGGTGATTGTCAGCTATCGGACACACTATCCAGCCAt > 1:1000651/1‑140 (MQ=255) gaTAGCGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCATTTCATTAATCAAAAGCAACCGGTGATTGTCAGCTATCGGACACACTATCCAGCCATTg < 2:1000651/140‑1 (MQ=255) | CGCATACCCATGATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCTGGTGGGATAACGTTCATCCCATCGTTGGATAGCAAAGGAGATAACGATGGGTAAAACCCAGCCCTTGCCAATATTAATTACTGGCGGAGGTCGTCGCATCGGCCTCGCCCTCGCATGGCATTTCATTAATCAAAAGCAACCGGTGATTGTCAGCTATCGGACACACTATCCAGCCATTG > NC_000913/1680842‑1681108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |