Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,931,183 (G)7→8 intergenic (‑90/‑133) ravA ← / → kup regulatory ATPase RavA/K(+):H(+) symporter Kup

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,931,1761.G93.7% 466.9 / 19.1 144intergenic (‑83/‑140)ravA/kupregulatory ATPase RavA/K(+):H(+) symporter Kup
Reads supporting (aligned to +/- strand):  ref base . (3/6);  new base G (68/65);  total (72/72)
Fisher's exact test for biased strand distribution p-value = 4.93e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 154 total aligned reads displayed.

TTCCAACGAACTGCTCAGGCGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑GGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACGAAAGACT  >  NC_000913/3931037‑3931310
                                                                                                                                              |                                                                                                                                         
ttCCAACGAACTGCTCAGGCGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCaaa                                                                                                                                            >  1:1423901/1‑140 (MQ=255)
  ccAACGAACTGCTCAGGCGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑gg                                                                                                                                        <  2:2097959/140‑1 (MQ=255)
      cGAACTGCTCAGGCGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑gggggg                                                                                                                                  >  2:11707/1‑140 (MQ=255)
       gAACTGCTCAGGCGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑ggggggg                                                                                                                                 <  2:228424/140‑1 (MQ=255)
        aaCTGCTCAGGCGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑gggggggg                                                                                                                                >  2:334022/1‑139 (MQ=255)
          cTGCTCAGGCGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑ggggggggga                                                                                                                              >  2:251207/1‑137 (MQ=255)
                  gCGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCtt                                                                                                                       >  1:823706/1‑140 (MQ=255)
                  gCGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCtt                                                                                                                       >  1:14781/1‑140 (MQ=255)
                      gAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAg                                                                                                                   <  2:1836016/140‑1 (MQ=255)
                      gAAATTCTTTCCGATAATAAATGAGGGTGAGCCATAATGAAGTGGCGTACTTTCGTGAAAAGTTCTGCGTAAATTGCGTGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTGAAAGGGGGGGGTATTTTTCTTTGAg                                                                                                                   <  2:1572096/140‑1 (MQ=255)
                       aaaTTCTTTCCGCTATTAAATGGGGGTGAGGCATAATTAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGc                                                                                                                  <  1:1002246/140‑1 (MQ=255)
                       aaaTTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGc                                                                                                                  <  2:2173879/140‑1 (MQ=255)
                       aaaTTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGc                                                                                                                  <  1:1516947/140‑1 (MQ=255)
                       aaaTTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGc                                                                                                                  <  2:14781/140‑1 (MQ=255)
                            cTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGt                                                                                                             >  2:1600061/1‑140 (MQ=255)
                                  gCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCAAAAATAGTTTCAGAT‑‑GGGGGGGTATATTTCAATGAGCCAGGTTAAtgt                                                                                                       >  2:1093720/1‑140 (MQ=255)
                                           tGAGGGTGAGCCATAATGAAGTAGCCTCCCTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCAtt                                                                                              <  1:964859/140‑1 (MQ=255)
                                              gggTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAg                                                                                           >  1:2227340/1‑140 (MQ=255)
                                               ggTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTCTTTTTCTTTGATCCCGGTTAAGGTGGCCGCATTTAgg                                                                                          >  1:967502/1‑140 (MQ=255)
                                                gTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCAtt                                                                                              >  2:1777452/1‑135 (MQ=255)
                                                gTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCAtt                                                                                              <  1:1777452/135‑1 (MQ=255)
                                                gTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGa                                                                                         >  2:2329843/1‑140 (MQ=255)
                                                gTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGa                                                                                         >  1:1030316/1‑140 (MQ=255)
                                                 tGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAg                                                                                        >  2:1512474/1‑140 (MQ=255)
                                                  gAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGt                                                                                       >  1:594744/1‑140 (MQ=255)
                                                   aGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTa                                                                                      >  2:2400321/1‑140 (MQ=255)
                                                   aGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTa                                                                                      >  2:1870466/1‑140 (MQ=255)
                                                   aGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTa                                                                                      >  1:286908/1‑140 (MQ=255)
                                                   aGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTa                                                                                      >  2:2031021/1‑140 (MQ=255)
                                                   aGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTa                                                                                      >  1:1848455/1‑140 (MQ=255)
                                                   aGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTa                                                                                      >  1:2090645/1‑140 (MQ=255)
                                                   aGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTGTCTTTGAGCCAAGTAAATGTGTCCGCATTTAGGAGTa                                                                                      >  1:829945/1‑140 (MQ=255)
                                                   aGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑GGAGGGGGTATTTTTGTCTACGCCAGGTGAATGGGGCAGCATCTAGGAGTa                                                                                      >  2:1194591/1‑140 (MQ=255)
                                                        tAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGAtt                                                                                 <  2:1407900/140‑1 (MQ=255)
                                                         aaTGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGAttt                                                                                >  1:1402337/1‑140 (MQ=255)
                                                         aaTGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTCAGCCAGGATAAGGTAGCCGCACTTAGGAGTACGAttt                                                                                >  1:946468/1‑140 (MQ=255)
                                                           tGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTg                                                                              <  2:1030316/140‑1 (MQ=255)
                                                             aaGTGGCGTCCTTTCGTTAAAACTTCTGCGTCAATGACGCGTATAGACTTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGcc                                                                            <  2:643167/140‑1 (MQ=255)
                                                              aGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGAtt                                                                                 >  1:169326/1‑134 (MQ=255)
                                                              aGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGAtt                                                                                 <  2:169326/134‑1 (MQ=255)
                                                               gTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGAtt                                                                                 >  1:1900301/1‑133 (MQ=255)
                                                               gTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGAtt                                                                                 <  2:1900301/133‑1 (MQ=255)
                                                               gTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGt                                                                          <  1:423909/140‑1 (MQ=255)
                                                               gTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGt                                                                          >  2:2414295/1‑140 (MQ=255)
                                                                 tgCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTa                                                                        <  2:272871/139‑1 (MQ=255)
                                                                 ggCGTCCTTTCGTCATAAGTTCTGCCTAACTTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTa                                                                        <  1:875889/140‑1 (MQ=255)
                                                                 ggCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTa                                                                        <  1:1542302/140‑1 (MQ=255)
                                                                 ggCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTa                                                                        <  2:1423901/140‑1 (MQ=255)
                                                                  gCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGcc                                                                            <  2:1256288/135‑1 (MQ=255)
                                                                  gCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTaa                                                                       >  2:1617988/1‑140 (MQ=255)
                                                                  gCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTaa                                                                       >  1:2099544/1‑140 (MQ=255)
                                                                  gCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTa                                                                        <  1:1970359/139‑1 (MQ=255)
                                                                   cGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAAt                                                                      >  2:1921528/1‑140 (MQ=255)
                                                                   cGTCCTTTCGTCAAAAGTTCTGCGTAAACTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAAt                                                                      <  2:1412774/140‑1 (MQ=255)
                                                                     tCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCg                                                                    >  2:86835/1‑140 (MQ=255)
                                                                     tCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCg                                                                    >  1:559135/1‑140 (MQ=255)
                                                                       cTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATCTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTaa                                                                       <  1:2325840/135‑1 (MQ=255)
                                                                        tttCGTCAAAATTTCTGTGTAATTTGCGAGTCTAGCCGTATCTTGCTGATGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGc                                                                 <  2:717576/140‑1 (MQ=255)
                                                                        tttCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGc                                                                 <  1:73612/140‑1 (MQ=255)
                                                                          tCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGACGCATTTAGGAGTACGATTTTTCCGTTAATCGTGCAt                                                               >  1:1213365/1‑140 (MQ=255)
                                                                          tCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAAGTTAATGTCGCCGCATCTAGGAGTAAGATTTTGCCGTTAATCGTGCAt                                                               >  2:757658/1‑140 (MQ=255)
                                                                                         cGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCtttttt                                                >  2:2316492/1‑140 (MQ=255)
                                                                                            aaaTTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTtgtg                                             <  1:1617988/140‑1 (MQ=255)
                                                                                              aTTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTCATCATGAATACTGGGCGCTTTTTTGTggg                                           >  1:1079891/1‑140 (MQ=255)
                                                                                                tGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTGTGGGCCa                                        <  2:2090645/140‑1 (MQ=255)
                                                                                                 gCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCa                                        <  1:1406547/140‑1 (MQ=255)
                                                                                                 gCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCa                                        <  2:1761878/140‑1 (MQ=255)
                                                                                                 gCGAGTATAGACGTTTCTTGCTAGTGGCTAAGATACTCTCAAA‑‑GGGGGCGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCa                                        <  2:946468/140‑1 (MQ=255)
                                                                                                   gAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAg                                      <  1:1752479/140‑1 (MQ=255)
                                                                                                   gAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAg                                      <  1:1936653/140‑1 (MQ=255)
                                                                                                   gAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAg                                      >  1:591721/1‑140 (MQ=255)
                                                                                                   gAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAg                                      <  1:2449541/140‑1 (MQ=255)
                                                                                                      tataGACGTTTCTTGCTTGTGGGTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGa                                   <  2:967502/140‑1 (MQ=255)
                                                                                                      tataGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGa                                   <  1:1512474/140‑1 (MQ=255)
                                                                                                        taGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACt                                 <  1:1918483/140‑1 (MQ=255)
                                                                                                            cGTTTCTTGCTGGTGCCTAAAATAGGCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGc                             <  1:1093720/140‑1 (MQ=255)
                                                                                                             gTTTCTTGCTGGTGGCTAAAATCGTCTCAAAA‑‑GGGTGGGGATTTTTCTTTGAGCCAGGTTAATGTGGCAGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGca                            <  2:759811/140‑1 (MQ=255)
                                                                                                             gTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGca                            <  1:2414295/140‑1 (MQ=255)
                                                                                                             gTTTCTTGCTGGTGGCAGAAATTGTCTCAAA‑‑GGCGTGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGca                            <  2:1079891/140‑1 (MQ=255)
                                                                                                               ttCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGcaca                          <  1:1281183/140‑1 (MQ=255)
                                                                                                               ttCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGcaca                          <  1:424797/140‑1 (MQ=255)
                                                                                                               ttCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGCCCAAGGGGCAAAGcaca                          >  2:2391610/1‑140 (MQ=255)
                                                                                                               ttCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGGTAATCGTGGATAATGTGCGCTTTTTAGTGGGCCAAGGGACTAAGcaca                          >  2:697755/1‑140 (MQ=255)
                                                                                                                tCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGcacac                         >  2:1974568/1‑140 (MQ=255)
                                                                                                                tCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGcacac                         >  2:503933/1‑140 (MQ=255)
                                                                                                                tCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGcacac                         >  2:488428/1‑140 (MQ=255)
                                                                                                                tCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGcacac                         >  2:1248028/1‑140 (MQ=255)
                                                                                                                tCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑GGGGGGGGATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGcacaca                        >  1:1427210/1‑140 (MQ=255)
                                                                                                                     cTGGTGGCTAAAATAGTCTCAAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACAttt                     >  1:2037406/1‑140 (MQ=255)
                                                                                                                         tggCTAAAATAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCatat                >  1:1257656/1‑140 (MQ=255)
                                                                                                                                aaTAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACg         <  2:1652408/140‑1 (MQ=255)
                                                                                                                                aaTAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACg         <  2:594744/140‑1 (MQ=255)
                                                                                                                                 aTAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACGa        <  1:11707/140‑1 (MQ=255)
                                                                                                                                  tAGTCTCAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACGaa       <  2:2201373/140‑1 (MQ=255)
                                                                                                                                  tAGTCTCAAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTcgttga        <  2:2037406/140‑6 (MQ=255)
                                                                                                                                     tctcAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCAAAGGGACAAAGTACTCATTTCGTATTTCAACGAAAGa    >  1:732298/1‑140 (MQ=255)
                                                                                                                                      ctcAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACGAAAGAc   <  1:2242479/140‑1 (MQ=255)
                                                                                                                                      ctcAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACGAAAGAc   <  1:334022/140‑1 (MQ=255)
                                                                                                                                      ctcAAA‑‑GGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACGAAAGACt  <  2:1427210/140‑1 (MQ=255)
                                                                                                                                       tcAAAGGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACGAAAGACt  <  1:2316492/140‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                         
TTCCAACGAACTGCTCAGGCGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑GGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACGAAAGACT  >  NC_000913/3931037‑3931310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: