| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,018,976 | (A)8→9 | intergenic (+39/+37) | matP → / ← ompA | macrodomain Ter protein/outer membrane porin A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,018,968 | 1 | . | A | 96.3% | 266.2 / 1.7 | 82 | intergenic (+31/+45) | matP/ompA | macrodomain Ter protein/outer membrane porin A |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base A (45/33); total (47/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01 | |||||||||||
ATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGATCAGTGCA > NC_000913/1018839‑1019100 | aTTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑aa‑aaaaaaa > 2:2436481/1‑138 (MQ=255)aTTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑aa‑aaaaaaa < 1:2436481/139‑2 (MQ=255) ttGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AA‑AAAAAAacc > 2:391709/1‑140 (MQ=255) ttCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AA‑AAAAAAaccccg < 2:1487225/140‑3 (MQ=255) cTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCgcagca > 2:160008/1‑140 (MQ=255) tGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGcagcag < 1:2291636/140‑1 (MQ=255) tGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGcagcag < 1:160008/140‑1 (MQ=255) tGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGTAAGTCAGTGCAAGTTAGTAAAGGCAAA‑AAAAAACCCCGCAGCAGCggg > 2:1049249/1‑140 (MQ=255) tGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCggg > 1:547015/1‑140 (MQ=255) tGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCggg < 1:528603/140‑1 (MQ=255) cGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCGGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCt > 1:1248851/1‑140 (MQ=255) cGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTTAAGGC‑AATAAAAAACCCCGCATCAGCGGGGTTTTTCt > 1:888760/1‑140 (MQ=255) cGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCt > 2:2463373/1‑140 (MQ=255) cAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGAc < 2:1340110/140‑1 (MQ=255) aaGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACga < 1:2227992/140‑1 (MQ=255) aaGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACga < 2:2051683/140‑1 (MQ=255) aaTACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACga > 1:306327/1‑134 (MQ=255) aaTACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACga < 2:306327/134‑1 (MQ=255) aaTACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACtt > 1:1860643/1‑140 (MQ=255) tACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCGCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTaa > 1:655489/1‑140 (MQ=255) tACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTaa < 2:2054445/140‑1 (MQ=255) gAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTg > 2:2046573/1‑140 (MQ=255) gAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTg > 2:178798/1‑140 (MQ=255) aTAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCg > 1:2383221/1‑140 (MQ=255) aTAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCg > 1:390447/1‑140 (MQ=255) tAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCgg < 2:1860643/140‑1 (MQ=255) aaaTGTCTTCTCTGAAGTAGGACCTGCAGGCGTTGCTGGTTAAGGAATCACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGTGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCt < 2:655489/140‑1 (MQ=255) aaaTGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCt < 1:2250385/140‑1 (MQ=255) aaTGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTg > 2:2211941/1‑140 (MQ=255) ttctCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGTGAGCTTAAGGCTGCGGCTGAGTTAc > 1:690363/1‑140 (MQ=255) ttctCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTAc > 1:749962/1‑140 (MQ=255) ttctCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTAc > 2:1802967/1‑140 (MQ=255) tctcTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCt > 1:2048176/1‑126 (MQ=255) tctcTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCt < 2:2048176/126‑1 (MQ=255) tctcTGAAGCAGGATCTGCAGGCATCGCTCGGTAAGGTATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACa < 1:1116781/140‑1 (MQ=255) tctGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAAc < 1:2211941/140‑1 (MQ=255) tctGAAGCAGGATCTGCAGGCAATGATGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAAc < 1:1039475/140‑1 (MQ=255) gAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTc > 1:1519114/1‑140 (MQ=255) aaGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTAGCAGACGAGAACTTAAGGCTGCGGCTGAGTTACAACGTCt > 2:696770/1‑140 (MQ=255) aGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAATGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCtt > 2:1431097/1‑140 (MQ=255) cAGGCTCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACCACGTCTTTg < 2:1519114/140‑1 (MQ=255) cAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTg < 1:2463373/140‑1 (MQ=255) cAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTg < 1:1802967/140‑1 (MQ=255) aGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGa < 2:749962/140‑1 (MQ=255) ggATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGAt < 1:2280094/140‑1 (MQ=255) gATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATa > 1:1490780/1‑140 (MQ=255) gATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTACGGCTGAGTTACAACGTCTTTGATa > 1:922179/1‑140 (MQ=255) gCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCttt < 1:1501866/140‑1 (MQ=255) aGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTaa > 2:319330/1‑140 (MQ=255) cATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACtt > 1:1309982/1‑140 (MQ=255) cATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACtt > 1:2253854/1‑140 (MQ=255) tGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAATGTCTTTGATACCTTTAACTTCGa > 1:474622/1‑140 (MQ=255) tGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGa > 1:1971456/1‑140 (MQ=255) gCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGAt < 1:1733088/125‑1 (MQ=255) gCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGAt > 2:1733088/1‑125 (MQ=255) gTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAAGGTCATTAATACCTTTAACTTCGATCTCTa > 1:895139/1‑140 (MQ=255) ggAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTAcgcg > 2:1896062/1‑140 (MQ=255) aaCTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGAt > 2:1585559/1‑140 (MQ=255) aaCTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGAt > 2:1861935/1‑140 (MQ=255) aaCTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGAt > 1:1609007/1‑140 (MQ=255) aaCTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGGTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGAt > 2:1960256/1‑140 (MQ=255) aCTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATc < 2:1248851/140‑1 (MQ=255) aCTGACGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCCGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATc > 2:1848024/1‑140 (MQ=255) aCGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGa > 2:426490/1‑140 (MQ=255) cGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAg > 1:1593283/1‑140 (MQ=255) cGAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAg > 1:1625301/1‑140 (MQ=255) gAAAGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGc > 1:122407/1‑140 (MQ=255) aaGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCa < 2:1490780/140‑1 (MQ=255) aGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAg > 1:1898404/1‑140 (MQ=255) aGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGACCTCTACGCGACGATCCGGAGCCAg > 1:1697319/1‑140 (MQ=255) aGTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATAACTTTAACATCGATCTCTACGCGACGATCCGGAGCCAg > 1:782919/1‑140 (MQ=255) gTCAGTTCAATTTACTAAAGGCTAA‑AAAAAAGCCCGCAGCAGCGGGGTCTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAgg < 2:895139/140‑1 (MQ=255) gTCAGTTCAATTTACTAAAGGCAAA‑AAAAAATCCCCCAGGAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAgg < 2:888760/140‑1 (MQ=255) gTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAATGTCTTTGATACCTTCAACTTCGATCTCTACGCGACGATCCGGAGCCAgg < 2:474622/140‑1 (MQ=255) gTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAgg < 2:2253854/140‑1 (MQ=255) gTCAGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGACCTCTACGCGACGATCCGGAGCCAgg < 2:1697319/140‑1 (MQ=255) aGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAg < 1:1585559/140‑1 (MQ=255) aGTTCAATTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAg < 2:1971456/140‑1 (MQ=255) aaTTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGAt < 1:426490/140‑1 (MQ=255) aaTTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGAt < 2:1309982/140‑1 (MQ=255) aTTTACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCCGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGATc < 1:1848024/140‑1 (MQ=255) tttACTAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTGCGAACTCTACGCGACGGTCCGTAGCCAGGCAGTCGATCa > 2:974730/1‑140 (MQ=255) tAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTGCGCTACGATCCGTAGCCGGGCAGTCGATCAGTgca > 2:752793/1‑140 (MQ=255) tAAAGGCAAA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGATCAGTgca > 1:2397771/1‑140 (MQ=255) | ATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AA‑AAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGATCAGTGCA > NC_000913/1018839‑1019100 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |