BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,857,096	Δ2,538 bp	coding (4‑2541/2562 nt)	mutS →	DNA mismatch repair protein MutS

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2857096	2859633	2538	222 [1]	[0] 220	mutS	DNA mismatch repair protein MutS

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2857095	1 (0.010)	219 (1.480)	88/276	0.1	99.8%	coding (3/2562 nt)	mutS	DNA mismatch repair protein MutS
*	?	NC_000913	2859634 =	0 (0.000)	219 (1.480)	88/276	0.1	99.8%	coding (2542/2562 nt)	mutS	DNA mismatch repair protein MutS

Only 100 of 222 total aligned reads displayed.

GGAACCAGCATCAAGAACTCGCCGTTCGCTTCTTCCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTATCTCAGGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGAACTGTTTTATGACGACGCAAAACGCGC  >  NC_000913/2856956‑2857232

      aGCATCAAGAACTCGCCGTTCGCTTCTTCCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttg                                                                                                                                     >  2:2297189‑M1/1‑134 (MQ=255)

       gCATCAAGAACTCGCCGTTCGCTTCTTCCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttga                                                                                                                                    <  1:150764‑M1/140‑8 (MQ=255)

       gCATCAAGAACTCGCCGTTCGCTTCTTCCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCaa                                                                                                                                    >  1:1364935/1‑140 (MQ=255)

        cATCAAGAACTCGCCGTTCGCTTCTTCCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaa                                                                                                                                   <  2:2374745‑M1/140‑9 (MQ=255)

        cATCAAGAACTCGCCGTCCGCTCCTTCCCCTTAAAGGATGAACTCCGGCATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaa                                                                                                                                   <  2:667043‑M1/140‑9 (MQ=255)

            aaGAACTCGCCGTTCGCTTCTTCCCCTGAAATGATTAACT‑CGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcc                                                                                                                              <  2:1422612‑M1/140‑14 (MQ=255)

             aGAACTCGCCGTTCGCTTCTTCCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcc                                                                                                                              <  1:1463691‑M1/140‑14 (MQ=255)

             aGAACTCGCCGTTCGCTTCTTCCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcc                                                                                                                              <  2:2271216‑M1/140‑14 (MQ=255)

             aGAACTCGCCGTTCGCTTCTTCCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcc                                                                                                                              <  1:2297189‑M1/140‑14 (MQ=255)

             aGAACTCGCCGTTCGCTTCTTCCCCTGAAATCATTAACTTCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCGATGcgcttgaagagcc                                                                                                                              <  2:821507‑M1/140‑14 (MQ=255)

              gAACTCGCCGTTCGCTTCTTCCCCTGAAATGGTTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACTCCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcct                                                                                                                             <  1:1703447‑M1/140‑15 (MQ=255)

               aaCTCGCCGTTCGCTTCTTCCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctg                                                                                                                            <  1:1255275‑M1/140‑16 (MQ=255)

                aCTCGCCGTTCGCTTCTTCCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctgg                                                                                                                           <  2:1265671‑M1/140‑17 (MQ=255)

                 cTCGCCGTTCGCTTCTTCCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggt                                                                                                                          <  1:1654284‑M1/140‑18 (MQ=255)

                  tCGCCGTTCGCTTCTTCCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAAGGAACCGGACATAACCTCATGtgcttgaagagcctggtg                                                                                                                         >  2:942290‑M1/1‑122 (MQ=255)

                   cGCCGTTCGCTTCTTCCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgt                                                                                                                        >  1:1908040‑M1/1‑121 (MQ=255)

                    gCCGTTCGCTTCTTCCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcc                                                                                                                              <  1:487753‑M1/133‑14 (MQ=255)

                    gCCGTTCGCTTCTTCCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaa                                                                                                                                   <  2:341515‑M1/128‑9 (MQ=255)

                        ttCGCTTCTTCCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataa                                                                                                                   <  2:1572248‑M1/140‑25 (MQ=255)

                        ttCGCTTCTTCCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataa                                                                                                                   >  2:525900‑M1/1‑116 (MQ=255)

                         tCGCTTCTTCCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataac                                                                                                                  >  1:361558‑M1/1‑115 (MQ=255)

                             ttcttcCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaatt                                                                                                              <  1:1580483‑M1/140‑30 (MQ=255)

                             ttcttcCCCTGAAATCATTAACGCCTGTATCATGTGCTCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaatt                                                                                                              <  1:1164114‑M1/140‑30 (MQ=255)

                                  ccccTGAAATGATTACCTCCGGCATAATGTGCGCCTTTTGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccga                                                                                                         <  1:687066‑M1/140‑35 (MQ=255)

                                  ccccTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccga                                                                                                         <  2:105172‑M1/140‑35 (MQ=255)

                                  ccccTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccga                                                                                                         <  2:13034‑M1/140‑35 (MQ=255)

                                    ccTGAAATGATTAACTCCGGTATCATGTGCGCCTT‑TGGGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatag                                                                                                      <  1:812256‑M1/140‑38 (MQ=255)

                                         aaTGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGACAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACACCATGcgcttgaagagcctggtgtaataacaattcccgatagtctt                                                                                                  >  2:409469‑M1/1‑99 (MQ=255)

                                                    ccGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcggg                                                                                       <  2:1888932‑M1/140‑53 (MQ=255)

                                                     cGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcggga                                                                                      <  2:2390577‑M1/140‑54 (MQ=255)

                                                     cGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgctggaagagccaggtttaagaacaattcgcgatggtcttttgctatcggga                                                                                      >  2:766599‑M1/1‑87 (MQ=255)

                                                      ggTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttaaagagcctggtggaatgacaattccagataatcttttgctatcgggaa                                                                                     >  2:730586‑M1/1‑86 (MQ=255)

                                                       gTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaat                                                                                    >  2:1986191‑M1/1‑85 (MQ=255)

                                                        tATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaata                                                                                   >  1:54080‑M1/1‑84 (MQ=255)

                                                                  gcCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtttaataacatttccctatagtcttttgctattgggaatatcaacgacaa                                                                         >  2:1202392‑M1/1‑74 (MQ=255)

                                                                  gcCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaa                                                                         >  2:2386837‑M1/1‑74 (MQ=255)

                                                                  gcCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaatgcccgatagtctgttgctatcgtgaatattaacgacaa                                                                         >  1:653009‑M1/1‑74 (MQ=255)

                                                                  gcCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtataataacaattcccgatagtcttttgctattgggaatattaacgacaa                                                                         >  2:1088015‑M1/1‑74 (MQ=255)

                                                                  gcCTTATGTGATTACAAAGAAAATAAAAACCCTCACACCGCATTTAATGTCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaa                                                                         <  2:846083‑M1/140‑67 (MQ=255)

                                                                    cTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaact                                                                       >  1:2388124‑M1/1‑72 (MQ=255)

                                                                    cTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcggga                                                                                      >  2:197107‑M1/1‑72 (MQ=255)

                                                                    cTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtctttcgccatcggggatattaacgctgtct                                                                       >  1:975493‑M1/1‑72 (MQ=255)

                                                                      tATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactga                                                                     >  1:2146840‑M1/1‑70 (MQ=255)

                                                                        tgtgATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacg                                                                   >  2:2333090‑M1/1‑68 (MQ=255)

                                                                           gATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaat                                                                <  2:2146840‑M1/140‑76 (MQ=255)

                                                                           gATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaat                                                                <  2:1220417‑M1/140‑76 (MQ=255)

                                                                              tACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaa                                                             >  2:1645286‑M1/1‑62 (MQ=255)

                                                                              tACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaa                                                             >  2:1603241‑M1/1‑62 (MQ=255)

                                                                              tACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaa                                                             >  2:371904‑M1/1‑62 (MQ=255)

                                                                               aCAACGAAAATAAAATCCATCAGACCCCAGTTAATATTAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaa                                                            <  1:1081510‑M1/140‑80 (MQ=255)

                                                                               aCAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagaccctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaa                                                            <  2:487522‑M1/140‑80 (MQ=255)

                                                                                  aCGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataa                                                         >  2:1751408‑M1/1‑58 (MQ=255)

                                                                                   cGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatatgaaggacaacggacgaataaaataaa                                                        >  1:818581‑M1/1‑57 (MQ=255)

                                                                                    gAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaa                                                       <  1:1317597‑M1/140‑85 (MQ=255)

                                                                                       aaTAAAAACCATCACGCCCCATGTACTATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaaca                                                    <  1:1000886‑M1/140‑88 (MQ=255)

                                                                                       aaTAAAAACCATCACACGCCATGTAATATCAGGGAACCGGACATAACCGCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaaca                                                    <  2:971703‑M1/140‑88 (MQ=255)

                                                                                       aaTAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaaca                                                    <  1:1748160‑M1/140‑88 (MQ=255)

                                                                                       aaTAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaaca                                                    <  1:1975606‑M1/140‑88 (MQ=255)

                                                                                       aaTAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaaca                                                    >  1:2097664‑M1/1‑53 (MQ=255)

                                                                                         tAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacacc                                                  <  2:2435117‑M1/140‑90 (MQ=255)

                                                                                         tAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacacc                                                  <  1:2333090‑M1/140‑90 (MQ=255)

                                                                                         tAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacacc                                                  <  2:2031935‑M1/140‑90 (MQ=255)

                                                                                         tAAAAACCATCACACACCATTTCATATCAGGGAACCGTACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacacc                                                  <  1:1095799‑M1/140‑90 (MQ=255)

                                                                                          aaaaaCCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccc                                                 <  1:1860727‑M1/140‑91 (MQ=255)

                                                                                          aaaaaCCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactaacgaataaaataaaaaccccc                                                 <  2:2114462‑M1/140‑91 (MQ=255)

                                                                                                   cacaCCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccc                                                 <  2:577766‑M1/131‑91 (MQ=255)

                                                                                                      acCCCATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataatagga                                     <  2:102323‑M1/140‑103 (MQ=255)

                                                                                                        cccATTTAATATCAGGGAACCGGACATAACCCCATGtgcttgaagagcctggtgtaataacaattcccgatagtctttcgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaa                                   <  2:2223510‑M1/140‑105 (MQ=255)

                                                                                                          cATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataatagga                                     <  2:31282‑M1/136‑103 (MQ=255)

                                                                                                          cATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataatagga                                     >  1:31282‑M1/1‑34 (MQ=255)

                                                                                                          cATTTAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacacc                                                  >  2:1475612‑M1/1‑34 (MQ=255)

                                                                                                             ttAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaaggacaactgtcgaataaaataaaaacgccctgtataataggaaagctta                              >  2:773952‑M1/1‑31 (MQ=255)

                                                                                                             ttAATATCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagctta                              >  2:1842544‑M1/1‑31 (MQ=255)

                                                                                                                  atCAGGGAACCGGACATAACCCTATAcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttatttta                         <  1:936347‑M1/140‑115 (MQ=255)

                                                                                                                  atCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttatttta                         >  1:377104‑M1/1‑26 (MQ=255)

                                                                                                                  atCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttatttta                         <  2:1505204‑M1/140‑115 (MQ=255)

                                                                                                                  atCAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttatttta                         <  1:1751408‑M1/140‑115 (MQ=255)

                                                                                                                   tCAGGGAACCGGACACAACCCCCTGggcttgaagagcgtggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttattttac                        <  1:1202232‑M1/140‑116 (MQ=255)

                                                                                                                    cAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttattttaca                       >  1:1330141‑M1/1‑24 (MQ=255)

                                                                                                                    cAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttattttaca                       <  1:76550‑M1/140‑117 (MQ=255)

                                                                                                                    cAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttattttaca                       >  1:1994097‑M1/1‑24 (MQ=255)

                                                                                                                    cAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttatttta                         >  2:440‑M1/1‑24 (MQ=255)

                                                                                                                    cAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttatttta                         <  1:440‑M1/138‑115 (MQ=255)

                                                                                                                    cAGGGAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaa                                   <  2:1361521‑M1/128‑105 (MQ=255)

                                                                                                                      gggAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgtcgaataaaataaaaacgccctgtatgataggaaagcttattttacagg                     >  2:640707‑M1/1‑22 (MQ=255)

                                                                                                                      gggAACCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttattttacagg                     >  1:1538463‑M1/1‑22 (MQ=255)

                                                                                                                       ggAACCGGACATAACCACATGctcttgaaggtcctcgtgcaataacaactcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttattttacaggg                    <  2:1190201‑M1/140‑120 (MQ=255)

                                                                                                                         aaCCGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttattttacagggta                  <  2:2077594‑M1/140‑122 (MQ=255)

                                                                                                                           ccGGACATAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttattttacagggtaaa                <  1:2378940‑M1/140‑124 (MQ=255)

                                                                                                                                 aTAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttattttacagggtaaaaccatg          <  2:1538463‑M1/140‑130 (MQ=255)

                                                                                                                                 aTAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttattttacagggtaaaaccatg          <  1:1500192‑M1/140‑130 (MQ=255)

                                                                                                                                 aTAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttattttacagggtaaaaccatg          <  1:2269327‑M1/140‑130 (MQ=255)

                                                                                                                                 aTAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttatttta                         <  1:2353451‑M1/125‑115 (MQ=255)

                                                                                                                                 aTAACCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttatttta                         >  2:2353451‑M1/1‑11 (MQ=255)

                                                                                                                                 aTAACCCCATGcgctcgaagagccttgtgtaataacacttcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttattttacagggtaaaaccatg          <  1:641994‑M1/140‑130 (MQ=255)

                                                                                                                                   aaCCCCATGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttattttacagggt                   >  1:2117815‑M1/1‑9 (MQ=255)

                                                                                                                                         aTGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttattttacagggtaaaaccatgccatctac  >  1:1284272‑M1/1‑3 (MQ=255)

                                                                                                                                         aTGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttattttacagggtaaaaccat           <  1:248006‑M1/131‑129 (MQ=255)

                                                                                                                                         aTGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacaccctgtataataggaaagcttattttacagggtaaaaccat           >  2:248006‑M1/1‑3 (MQ=255)

                                                                                                                                         aTGcgcttgaagagcctggtgtaataacaattcccgatagtcttttgctatcgggaatattaacgacaactgacgaataaaataaaaacacactgtataacagggaaggttattttagagggaaaaaccatgccatctac  >  2:760284‑M1/1‑3 (MQ=255)

GGAACCAGCATCAAGAACTCGCCGTTCGCTTCTTCCCCTGAAATGATTAACTCCGGTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTATCTCAGGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGAACTGTTTTATGACGACGCAAAACGCGC  >  NC_000913/2856956‑2857232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`