| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,825,061 | 0 | G | A | 29.2% | 136.6 / 15.7 | 73 | intergenic (‑124/+79) | ves/spy | HutD family protein Ves/ATP‑independent periplasmic chaperone |
| Reads supporting (aligned to +/- strand): ref base G (48/3); new base A (0/21); total (48/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.62e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTC > NC_000913/1824922‑1825197 | tatCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGagaaaag > 1:361482/1‑140 (MQ=255) atCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGagaaaaga > 1:2188347/1‑140 (MQ=255) atCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGagaaaaga > 1:536930/1‑140 (MQ=255) acagtttCCATCCCCGCTCCCGTCCTTTTTTTTTAATTTTTATCGTTCTGGTACCGGTGGATGTTTATCGGCAACTGGGGTGTTTTACGTTAGTGGTGATCAGGTTTTTTTTAA‑AACTGTTTGAAAAGAAAAAAAAAAAc < 2:989378/135‑1 (MQ=255) tCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGa > 1:1674160/1‑140 (MQ=255) tCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGa > 1:2292352/1‑140 (MQ=255) tCCATACTCGCTCCCGGCCCATTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGa > 1:1525018/1‑140 (MQ=255) tACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCt > 2:2116233/1‑140 (MQ=255) tACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCt > 1:21301/1‑140 (MQ=255) gCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AGCTGATTGACAAGAGAAAAGAAATCCGCCGATCCTGTCCa > 2:1138726/1‑140 (MQ=255) gCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCa > 2:1954392/1‑140 (MQ=255) gCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCa > 2:2448924/1‑140 (MQ=255) gCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCa > 1:2077677/1‑140 (MQ=255) gCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACGGTTTGAGAAGACAAAAGAAAACCGCCGATCCTGTCCa > 1:1184160/1‑140 (MQ=255) gCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACAGTTTGAGAAGAGAATAGAAAAACGCCGATCCTgctgt > 1:989378/1‑136 (MQ=255) cTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCAc > 1:264546/1‑140 (MQ=255) cccGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCg > 1:544668/1‑140 (MQ=255) cccGGCCCGTTCTTTTCATTGTTATCGTTCAGGGAACCGCGGCTGGTTATCGGCAACTCGGGTGATTTACGTTAGGGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCg > 1:2336059/1‑140 (MQ=255) cGGCCCGTTTTTTTTATCGTTAGCGTTCAGGCACCGGTGGATGTTTATCGGCACCGGGGGTGTTTTAGGTTGGTGGTGATCGGGTTTTTTTTAC‑ATTTTTTTGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCa < 2:745745/140‑1 (MQ=255) ggCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTGACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCAt < 1:1307358/140‑1 (MQ=255) ttCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGc > 1:534816/1‑140 (MQ=255) ttttttCTTTTTTATCGTTCAGGTAACCGTGGATGTTTATCGGCACCGGGGGTGTTTTACGTTGGTGGTGATCGGTTTTTTTTTAC‑AACTTTTGGAAAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCa < 2:2436923/138‑1 (MQ=255) ttttttCTTTGTTATCGTTAAGGAAACGGTGGTTGTTTATCGGCAACTGGGGTTTTTTACGTTGGTGGTAATCGGTTTTTTTTTAC‑AACTGTTTGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCa < 2:1875015/138‑1 (MQ=255) ttttttCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTGGGGTGATTTACGTTAGTGGTGATCAGGTTTTTTTTAC‑AACTGTTTGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCa < 1:1954392/138‑1 (MQ=255) tattttttATTGTTCGGTTAACGTTGGTTGGTTTTCGGCAGTTGGGGTGATTTAGGTTAGTGTTG‑TGAGGCTTTTTTTTCAAATTGTTGGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTa < 2:536930/134‑1 (MQ=255) tCATTGTTTTGGTTAAGGTACCCGTGGTTGTTTAGGGCCAACTGGGGTGTTTTACTTTAGTGGTGATCAGGTTTTTTTTAC‑AATTTTTGGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTa < 2:2188347/140‑1 (MQ=255) aTTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGATGAGAAAAGAAAACCACCGATCCTGTACACCGGATTACTGCAAGGTAGt > 2:1133324/1‑140 (MQ=255) tATCTTTCAGGTACCGGTGGTTGGTTATCGGCAACTGGGGTGATTTACTTTAGTGGTGATCGGGTTTTTTTTAC‑AATTTTTTGAAAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACa < 2:2077677/140‑1 (MQ=255) tATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACa > 1:1909918/1‑140 (MQ=255) cAGGTACCGGGGGATGGTTATCGCCAACGGGGGTGTTTTACGTTGGTGGTGATCAGGTTTTTTTTAC‑AACTGTTTGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACcgg < 2:2143731/140‑1 (MQ=255) cAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATGCTGACCAGCGCATTACCGCAATGTAGTGGACAAGACcgg > 2:771469/1‑140 (MQ=255) cAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACcgg > 1:2143731/1‑140 (MQ=255) ggTAACCGTGGATGGTTATCGGTAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACcggcg > 1:362872/1‑140 (MQ=255) aTGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGttt > 1:441509/1‑140 (MQ=255) ttATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGttttttt > 2:561154/1‑139 (MQ=255) ttATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTg > 1:169210/1‑140 (MQ=255) tCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGtttttttggt > 1:2336272/1‑136 (MQ=255) cGGAAACTGGGGTGATTTACGTTAGTGGTGCTCAGGTTTTTTTTAC‑ACTTGTTGGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTg < 2:544668/140‑1 (MQ=255) ggCAACTGGGGTGTTTTATGTTAGTGGTGATCGGGTTTTTTTAAC‑AATTGTTTGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGa < 2:1525018/140‑1 (MQ=255) gCAACTGGGGTAATTTACGTTGGTGGTGATCAGTTTTTTTTTAC‑AACTGTTTGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGaa < 2:21301/140‑1 (MQ=255) catctggggTGATTTACGTTAGTGGTGATCGGGTTTTTTTTAC‑ACCTGTTTGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGaaa < 2:1909918/134‑1 (MQ=255) cTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTC‑TAAGTTTTTTGGCTGAAAGatt > 2:2336156/1‑140 (MQ=255) ggatGATTTGCGTCAGGGGTGAAAAGGTTTTTTTAAC‑AATTTTGTGAAAAGAGAAAACAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGattat < 1:1543347/137‑1 (MQ=255) tttACGTTCGTGGTGATGGGGTCTTTTTAAC‑TACTCTTGGAAAAGAAACAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTcagca < 2:715944/140‑1 (MQ=255) cGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTg > 1:318264/1‑140 (MQ=255) tttAGGGGTGATCAGTTTTTTTATAA‑AATATTTTGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGc < 1:1133324/139‑1 (MQ=255) gTTAGTGGTGATCAGTTTTTTTTTAA‑AACCGTTTGAGTAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGc < 1:771469/140‑1 (MQ=255) ttAGTGGTGATCAGTTTTTTTTTAC‑AACTTTTAGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCa < 2:441509/140‑1 (MQ=255) ttAGTGGTGATCAGTTTTTTTTTAC‑AACTGTTTGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCa < 2:318264/140‑1 (MQ=255) ttAGTGGTCGCCAGGTTTTTTTTAC‑ATTTTTTTGAAAAGAAAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCa < 2:2292352/140‑1 (MQ=255) tAGTGGTGATAAGGTTTTTTTTAC‑ACCTGTTGGAAAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAg < 1:1495988/140‑1 (MQ=255) gtggtgATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTTAGTTTTTTTGCTGAAAGATTATTCAGCAGGTGCAggg > 2:1495988/1‑139 (MQ=255) gtggtgATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGc > 2:1837680/1‑140 (MQ=255) gtggtgATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCATAACGTTATTGGCTGAAAGATAATTCAGCAGTTGCAGGc > 2:963054/1‑140 (MQ=255) tggtgATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCa > 1:1531563/1‑140 (MQ=255) tggtgATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCa > 1:577716/1‑140 (MQ=255) atcggtttttttttAA‑ATCTGTTGAAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTa < 2:1674160/133‑1 (MQ=255) aTCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGTTCTTAAGTATTTCTGCAGAAAGATTGTTCACCAGTTGCAGGCAttttt > 2:854222/1‑139 (MQ=255) aTCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTa > 1:2479228/1‑140 (MQ=255) cAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGCCTTAAGTTTTTTTGCTGAAAAAATATTCAGCAGATGCAGGCATTTTAcc > 2:1841296/1‑140 (MQ=255) ggCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGACATTTTACCtt > 1:1287058/1‑140 (MQ=255) gCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTTAGTTTTTTGGCTG‑AAGATTATTCAGCAGTTTCAGGGATTTTTCCtttt > 1:1742433/1‑140 (MQ=255) gCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTTGGTGAAAGATTATTTAGCAGTTGGCGGCATTTTACCttt > 2:427696/1‑140 (MQ=255) gCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCttt > 2:2213329/1‑140 (MQ=255) cttttttAC‑AATTGTTTGAGAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTg < 2:1497901/139‑1 (MQ=255) ttttttAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGc > 2:1890798/1‑140 (MQ=255) ttttAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCg > 2:1444817/1‑140 (MQ=255) c‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTAAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGa > 1:1044082/1‑140 (MQ=255) tttttGAAAAGAAAATAAAAAATCGTCGATCCTGTCCGCCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGtt < 1:1138726/138‑1 (MQ=255) tttttGAAAAAAAAAAAAAACCCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGtt < 2:2336272/138‑1 (MQ=255) tttGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGtctg > 1:1497901/1‑137 (MQ=255) tttGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCt > 1:2490244/1‑140 (MQ=255) tttGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCt > 1:264148/1‑140 (MQ=255) tttGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCACTTTACCATTTGCCGCTGGACGTTCt > 1:836495/1‑140 (MQ=255) aagagaaAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGa < 2:169210/140‑1 (MQ=255) aagagaaAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTC‑TAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGAc < 1:2336156/140‑1 (MQ=255) gagaaAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTTCCGCTGGACGTTCTGTCAGACg > 1:1135036/1‑140 (MQ=255) gagaaAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACg > 1:2112159/1‑140 (MQ=255) gagaaAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACg > 1:123257/1‑140 (MQ=255) agaaaagaaaACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGc < 2:534816/140‑1 (MQ=255) aaaaaaaaaaaCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGGCCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGc < 2:361482/138‑1 (MQ=255) aaaaaaaaCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTtc < 1:2213329/140‑1 (MQ=255) | TATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTAC‑AACTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTC > NC_000913/1824922‑1825197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |