Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,632,770 T→C intergenic (‑485/‑120) ydfJ ← / → ynfT putative transporter YdfJ/Qin prophage; protein YnfT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,632,7700TC100.0% 243.0 / NA 99intergenic (‑485/‑120)ydfJ/ynfTputative transporter YdfJ/Qin prophage; protein YnfT
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (58/41);  total (58/41)

Only 100 of 108 total aligned reads displayed.

TATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCC  >  NC_000913/1632633‑1632835
                                                                                                                                          |                                                                 
tatCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTtgccgc                                                                 >  2:1266653/1‑140 (MQ=25)
tatCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTtgccgc                                                                 >  2:1736455/1‑140 (MQ=25)
tatCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTtgccgc                                                                 >  2:2390472/1‑140 (MQ=21)
 atCACCTTGATATTTTTGTTTTACAGATAAAAACTGTTATCTATGTATCCTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTgccgcc                                                                <  2:894753/140‑1 (MQ=255)
 atCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTgccgcc                                                                <  1:1938333/140‑1 (MQ=21)
 atCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTgccgcc                                                                >  1:1758771/1‑140 (MQ=25)
     ccTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCt                                                            >  1:463654/1‑140 (MQ=21)
      cTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCt                                                            >  1:1643201/1‑140 (MQ=255)
      cTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATACACCGCCTGATTTTTGCCGCCACCTg                                                           >  1:909620/1‑140 (MQ=25)
      cTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTg                                                           >  2:1901218/1‑140 (MQ=25)
      cTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTg                                                           >  1:1666263/1‑140 (MQ=21)
      cTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTg                                                           >  2:447537/1‑140 (MQ=25)
      cTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTg                                                           >  2:416323/1‑140 (MQ=25)
      cTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTg                                                           >  2:454766/1‑140 (MQ=21)
       ttGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGt                                                          <  1:2231168/140‑1 (MQ=18)
        tGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGtt                                                         >  2:1305116/1‑140 (MQ=25)
        tGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCGTGCGCCAGAAACCGGCTGATTCTTGCCGCCACCTGtt                                                         >  1:826066/1‑140 (MQ=11)
          atatTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTgccgcc                                                                <  1:374039/131‑1 (MQ=21)
          atatTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTgccgcc                                                                >  2:374039/1‑131 (MQ=21)
          atatTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAg                                                       <  1:1305116/140‑1 (MQ=21)
          atatTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAg                                                       >  2:2033339/1‑140 (MQ=25)
          atatTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAg                                                       >  2:329171/1‑140 (MQ=25)
          atatTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAg                                                       <  1:1969493/140‑1 (MQ=18)
          atatTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAACTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAg                                                       >  1:92830/1‑140 (MQ=21)
            ttttttctttttcAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCa                                                     <  2:2457346/139‑1 (MQ=21)
            atTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCa                                                     <  2:418319/140‑1 (MQ=21)
            atTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCa                                                     <  1:329171/140‑1 (MQ=18)
             tttttctttttcAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCAt                                                    <  1:1255681/140‑1 (MQ=21)
                ttctttttcAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCa                                                     >  2:1537704/1‑136 (MQ=37)
                ttctttttcAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCa                                                     <  1:1537704/136‑1 (MQ=18)
                ttctttttcAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTcc                                                 >  2:1652721/1‑140 (MQ=37)
                ttctttttcAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCATGATTTTTGCCGCCACCTGTTAGCATTcc                                                 >  1:817782/1‑140 (MQ=255)
                   tttttcAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGt                                              <  2:2438233/140‑1 (MQ=21)
                    ttttcAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGta                                             >  2:1228246/1‑140 (MQ=18)
                    ttttcAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGta                                             <  1:280183/140‑1 (MQ=18)
                     tttcAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGtat                                            >  2:1927684/1‑140 (MQ=18)
                        cAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCTCCTTATTTTTGCCGCCACCTGTTAGCATTCCTGTATAcc                                         >  2:1032545/1‑140 (MQ=12)
                          gATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTg                                       <  2:1797194/140‑1 (MQ=14)
                           aTAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCAt                                                    <  1:1256622/126‑1 (MQ=14)
                           aTAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCAt                                                    >  2:1256622/1‑126 (MQ=18)
                            tAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGaa                                     <  2:1237120/140‑1 (MQ=14)
                                  cTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACa                               <  2:2333349/140‑1 (MQ=17)
                                     ttATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATg                            >  2:1405518/1‑140 (MQ=18)
                                     ttATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATg                            >  1:2181740/1‑140 (MQ=18)
                                     ttATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATg                            >  2:2084720/1‑140 (MQ=17)
                                     ttATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATg                            >  1:2253354/1‑140 (MQ=18)
                                       aTCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGaa                                     >  2:1536779/1‑129 (MQ=21)
                                       aTCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGaa                                     <  1:1536779/129‑1 (MQ=14)
                                       aTCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGa                                 >  1:355345/1‑133 (MQ=17)
                                             gTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTa                    >  1:446493/1‑140 (MQ=18)
                                               ataCTTTTTAA‑CCCAATCCGTGTAGAGTCTGGACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACg                  <  2:1208825/140‑1 (MQ=255)
                                               ataCTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACg                  <  1:1228246/140‑1 (MQ=14)
                                               ataCTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACg                  >  2:2318740/1‑140 (MQ=17)
                                               ataCTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACg                  <  1:1736455/140‑1 (MQ=17)
                                               ataCTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAACATTCCTGTATACCCGAAACGTCAATGTTTATCTACg                  >  1:1128779/1‑140 (MQ=255)
                                                taCTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGa                 <  1:2318740/140‑1 (MQ=17)
                                                  cTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAAc               <  1:125740/140‑1 (MQ=14)
                                                  cTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAAc               <  2:2181740/140‑1 (MQ=14)
                                                   ttttAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACt              >  2:545257/1‑140 (MQ=18)
                                                    tttAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACtt             >  2:1229911/1‑140 (MQ=18)
                                                    tttAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACtt             >  2:334980/1‑140 (MQ=18)
                                                    tttAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACtt             >  2:326968/1‑140 (MQ=18)
                                                    tttAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACtt             <  1:1652721/140‑1 (MQ=17)
                                                    tttAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCAGTCCGGTAAACCTGAAACGACAATGTTTATCTACGAACtt             >  2:785753/1‑140 (MQ=255)
                                                     ttAAA‑CCCAATCCGTGTAGAGTGTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACttt            >  2:614311/1‑140 (MQ=18)
                                                     ttAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACttt            >  2:1972256/1‑140 (MQ=18)
                                                      tAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTa           >  2:2320533/1‑140 (MQ=18)
                                                      tAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTa           >  1:1643600/1‑140 (MQ=18)
                                                      tAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTa           >  2:2239664/1‑140 (MQ=18)
                                                      tAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTa           >  2:2465639/1‑140 (MQ=18)
                                                      tAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTa           >  1:116982/1‑140 (MQ=18)
                                                      tAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTa           >  1:396342/1‑140 (MQ=18)
                                                      tAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTa           >  2:1829134/1‑140 (MQ=18)
                                                      tAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCGGAATCGCCAATGTTTATCTACGAACTTTa           >  1:1193352/1‑140 (MQ=255)
                                                      tAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGCATATCTGAAACGCCAATGTTTATCTACGAACTTTa           >  2:1093362/1‑140 (MQ=255)
                                                      tAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCAGTATACCAGAAGCGGCAATGTGTATCTACGAACTTTa           >  1:631619/1‑140 (MQ=11)
                                                      tAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTCTTAGCATTACTGGATAGCTGAAACGCCAATATTTATCTACGAACTTTa           >  2:764854/1‑140 (MQ=11)
                                                       aaa‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTaa          >  1:228666/1‑140 (MQ=18)
                                                        aa‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACg                  >  1:1625886/1‑131 (MQ=18)
                                                         accccAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAg         <  2:1643201/138‑1 (MQ=17)
                                                         a‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGa        <  2:49640/140‑1 (MQ=17)
                                                         a‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGa        <  2:396342/140‑1 (MQ=17)
                                                         a‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGa        <  1:1437159/140‑1 (MQ=17)
                                                           cccAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGaa       <  1:2390472/140‑1 (MQ=17)
                                                           cccAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGaa       <  1:1266653/140‑1 (MQ=17)
                                                           cccAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCC‑CCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAac      >  2:1400197/1‑140 (MQ=16)
                                                              aaTCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACGTGAAACGTCAACGTATATCTACGAACTTTAAGAacac    >  1:704398/1‑140 (MQ=11)
                                                              aaTCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAacac    >  2:1406718/1‑140 (MQ=18)
                                                              aaTCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAacac    >  2:1576325/1‑140 (MQ=18)
                                                              aaTCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAacac    >  1:2087592/1‑140 (MQ=18)
                                                              aaTCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAacac    >  2:2274211/1‑140 (MQ=18)
                                                              aaTCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCC‑CCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACAcc   <  1:1400197/140‑1 (MQ=12)
                                                               gtCCGTGTAGAGTATCTACATAAGACAGTCTGCAGTTACCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACAcc   <  1:658854/139‑1 (MQ=11)
                                                               aTCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACAcc   <  1:1901218/140‑1 (MQ=17)
                                                               aTCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACAcc   <  2:2249341/140‑1 (MQ=17)
                                                                tCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACAccc  >  1:1782306/1‑140 (MQ=18)
                                                                tCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACAccc  >  1:2259924/1‑140 (MQ=18)
                                                                tCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTAAAACGACAATGGTTTTCTACGAACTTTAAGAACAccc  >  1:640486/1‑140 (MQ=255)
                                                                           tctcTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACAcc   <  1:1873891/128‑1 (MQ=17)
                                                                           tctcTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCCGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACAcc   >  2:1873891/1‑128 (MQ=21)
                                                                                                                                          |                                                                 
TATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCC  >  NC_000913/1632633‑1632835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑