BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,472,070	T→C	intergenic (‑8/+42)	yfdL ← / ← yfdM	CPS‑53 (KpLE1) prophage; putative uncharacterized protein YfdL/CPS‑53 (KpLE1) prophage; putative methyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,472,070	0	T	C	100.0%	332.7 / NA	100	intergenic (‑8/+42)	yfdL/yfdM	CPS‑53 (KpLE1) prophage; putative uncharacterized protein YfdL/CPS‑53 (KpLE1) prophage; putative methyltransferase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (41/59); total (41/59)

Only 100 of 101 total aligned reads displayed.

ATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGTAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGTTCTGACCAGTCATGCGCCAGCGCGTTGTCTTCCG  >  NC_000913/2471935‑2472200

atatCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGtc                                                                                                                                <  1:480613/140‑1 (MQ=255)

 tatCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGtca                                                                                                                               <  2:1934482/140‑1 (MQ=255)

    cGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGtcatca                                                                                                                            >  2:2012824/1‑140 (MQ=255)

    cGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGtcatca                                                                                                                            >  2:1996293/1‑140 (MQ=255)

    cGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCCGCAAAGCCCCTGCTACAACATGTCAAAGCAGtcatcc                                                                                                                            >  1:795387/1‑139 (MQ=17)

     gCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTcatcat                                                                                                                           >  1:230246/1‑140 (MQ=255)

      ccAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCGCAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCatcatc                                                                                                                          >  2:541924/1‑140 (MQ=255)

      ccAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCatcatc                                                                                                                          <  1:375224/140‑1 (MQ=255)

      ccAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCatcatc                                                                                                                          >  1:1759165/1‑140 (MQ=255)

      ccAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCatcatc                                                                                                                          <  2:464383/140‑1 (MQ=255)

      ccAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCatcatc                                                                                                                          >  2:533521/1‑140 (MQ=255)

       cAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCGCAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATcc                                                                                                                         <  1:541924/140‑1 (MQ=255)

       cAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATcc                                                                                                                         <  1:2168085/140‑1 (MQ=255)

       cAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATcc                                                                                                                         <  2:239302/140‑1 (MQ=255)

       cAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATcc                                                                                                                         <  1:1261174/140‑1 (MQ=255)

       cAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATcc                                                                                                                         <  1:92636/140‑1 (MQ=255)

            ggATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATc                                                                                                                    <  2:2084122/140‑1 (MQ=255)

                tCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCGGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTg                                                                                                                <  2:194544/140‑1 (MQ=255)

                          tAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGc                                                                                                      <  1:2345257/140‑1 (MQ=255)

                          tAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGc                                                                                                      <  1:560479/140‑1 (MQ=255)

                          tAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGc                                                                                                      <  1:1373245/140‑1 (MQ=255)

                          tAACAGCAGCGCACGAAGCGCGATACGCACCTGGTCACGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGc                                                                                                      <  1:687855/140‑1 (MQ=14)

                            aCAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCg                                                                                                    >  1:1484276/1‑140 (MQ=255)

                                cagcGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCTCCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCt                                                                                                <  1:1727450/140‑1 (MQ=255)

                                   cgcACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAATCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCATGCGTGCCGGTCTggg                                                                                             >  1:406742/1‑140 (MQ=255)

                                   cgcACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACGTGTCAAAGCAGTGATCGTCCAGATCGGTGGAAGGCGTGCCGGTCTggg                                                                                             >  2:732839/1‑140 (MQ=17)

                                   cgcACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTggg                                                                                             >  2:347986/1‑140 (MQ=255)

                                   cgcACGAAGCGCGGTAAGCAGCTGGTCATGCAGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAATCATCATCCAGATCGGTGGCAAGCGTGCCGGTCTggg                                                                                             >  1:766946/1‑140 (MQ=255)

                                    gcACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTgggg                                                                                            <  2:2066922/140‑1 (MQ=255)

                                    gcACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAAGCGTGCCGGTCTgggg                                                                                            <  2:1375652/140‑1 (MQ=255)

                                    gcACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTGCTCCAGGCTGGTGACGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTgggg                                                                                            <  2:2331310/140‑1 (MQ=17)

                                     cACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTTGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGCGGCAGGCTTGCCGGTCTggggg                                                                                           >  2:1524308/1‑140 (MQ=255)

                                     cACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTggggg                                                                                           >  1:2166748/1‑140 (MQ=255)

                                     cACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTggggg                                                                                           >  1:2026499/1‑140 (MQ=255)

                                     cACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTggggg                                                                                           >  1:359214/1‑140 (MQ=255)

                                      aCGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGt                                                                                          <  2:2166748/140‑1 (MQ=255)

                                       cGAAGCGCGGTAAGCAGCTGGTTATCCCGGCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGtt                                                                                         <  1:827508/140‑1 (MQ=255)

                                       cGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGtt                                                                                         <  1:2451723/140‑1 (MQ=255)

                                        gAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTa                                                                                        >  2:26112/1‑140 (MQ=255)

                                          aGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTAcc                                                                                      >  1:1562057/1‑140 (MQ=255)

                                           gcgcGGT‑AGCAGCTGGTGATGCAGCCCCTTCGCCATGCTTGCACCGGACGCCTCCACAACGCTGCAAAACTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCAc                                                                                    <  2:915269/140‑1 (MQ=14)

                                            cgcgGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCAc                                                                                    <  1:26112/140‑1 (MQ=255)

                                             gcgGTAAGCAGCTGGTCGTGCCCCCCCTTCTCCCGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACg                                                                                   <  2:1097653/140‑1 (MQ=255)

                                                 tAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTa                                                                               <  2:189095/140‑1 (MQ=255)

                                                   agcagcTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACg                                                                             <  1:1849499/140‑1 (MQ=255)

                                                    gcagcTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACgg                                                                            <  1:222813/140‑1 (MQ=255)

                                                        cTGGTCATTCCGCCCCCCCTCCCGGCTGGCACCCGTGGCGTCCACAACCCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGa                                                                        <  2:1098750/140‑1 (MQ=14)

                                                        cTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGa                                                                        <  1:533521/140‑1 (MQ=255)

                                                        cTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGa                                                                        <  2:230246/140‑1 (MQ=255)

                                                           gTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTa                                                                     >  1:1374855/1‑140 (MQ=255)

                                                                     cccTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACg                                                                             >  1:2269882/1‑122 (MQ=255)

                                                                     cccTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACg                                                                             <  2:2269882/122‑1 (MQ=255)

                                                                     cccTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGgcag                                                           <  2:2026499/140‑1 (MQ=255)

                                                                     cccTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGgcag                                                           >  2:1693991/1‑140 (MQ=255)

                                                                     cccTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGgcag                                                           <  2:1562057/140‑1 (MQ=255)

                                                                     cccTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGgcag                                                           <  2:95602/140‑1 (MQ=255)

                                                                     cccTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGgcag                                                           <  1:1407804/140‑1 (MQ=255)

                                                                     cccTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGgcag                                                           <  1:1693991/140‑1 (MQ=255)

                                                                     cccTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGgcag                                                           <  1:2470477/140‑1 (MQ=255)

                                                                     cccTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGgcag                                                           >  1:450848/1‑140 (MQ=255)

                                                                     cccTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGACTGGGGGTTACCACGGGTACGCGGGATTACCAAAGgcag                                                           >  2:783355/1‑140 (MQ=255)

                                                                      ccTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGgcagc                                                          <  1:1996293/140‑1 (MQ=255)

                                                                      ccTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGACATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGgcagc                                                          <  1:1524308/140‑1 (MQ=255)

                                                                       cTTCTCCAGGCTGGCTCCGGAGTCCGCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGgcagca                                                         <  1:1162919/140‑1 (MQ=255)

                                                                               ggCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAg                                                 >  2:1443123/1‑140 (MQ=255)

                                                                               ggCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAg                                                 <  2:2241643/140‑1 (MQ=255)

                                                                                   ggCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAg                                                 >  1:101467/1‑136 (MQ=255)

                                                                                   ggCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAg                                                 <  2:101467/136‑1 (MQ=255)

                                                                                    gCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCg                                            >  1:61092/1‑140 (MQ=255)

                                                                                    gCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCg                                            >  1:1459667/1‑140 (MQ=255)

                                                                                    gCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCg                                            >  2:2068197/1‑140 (MQ=255)

                                                                                     cACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGc                                           >  1:1656843/1‑140 (MQ=255)

                                                                                     cACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGCACGGGGGTTTAACAAAGGCAGCACCTTTAAGCTCCGc                                           >  1:1024804/1‑140 (MQ=255)

                                                                                        cGGAGGCCTCCGCAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCGCCTTTAAGCTCCGCAAg                                        <  1:1631164/140‑1 (MQ=255)

                                                                                        cGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAg                                        <  1:391229/140‑1 (MQ=255)

                                                                                        cGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAg                                        <  2:1759165/140‑1 (MQ=255)

                                                                                          gaggaatCCACAACGCTGAAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGAc                                      <  2:2407893/134‑1 (MQ=255)

                                                                                          gAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGAc                                      >  2:2386495/1‑140 (MQ=255)

                                                                                             gCCTCCACAACGCTGGAAAGCTTCTACTGTAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGtt                                   <  1:718938/140‑1 (MQ=21)

                                                                                             gCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGtt                                   <  1:347986/140‑1 (MQ=255)

                                                                                             gCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGtt                                   <  2:359214/140‑1 (MQ=255)

                                                                                              ccTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGTTc                                  >  1:1432091/1‑140 (MQ=255)

                                                                                                 ccACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGTTCTGa                               <  2:1386041/140‑1 (MQ=255)

                                                                                                      aCGCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGTTCTGACCAGt                          >  2:2059288/1‑140 (MQ=255)

                                                                                                        gCTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGTTCTGACCAGTCa                        <  2:1656843/140‑1 (MQ=255)

                                                                                                         cTGCAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGACAGAATCGGTAAGCTCAGCAAAACGTTCTGTCCAGTCAt                       >  2:1211128/1‑140 (MQ=18)

                                                                                                            cAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTATCAAAGGCAGCACTTTTTAGCTCCGCAAGACGTTCTGACCAGTCATgcg                    >  2:951074/1‑140 (MQ=255)

                                                                                                            cAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGTTCTGACCAGTCATgcg                    >  1:76762/1‑140 (MQ=255)

                                                                                                            cAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGTTCTGACCAGTCATgcg                    >  1:1432440/1‑140 (MQ=255)

                                                                                                            cAAAGCTCCTCCTGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGATACCACGGGTACGGGGGATTAACAAAGGCACCACCTTTTAGCTCCGCAAGACCTTCTGACCAGTCATgcg                    >  2:1041710/1‑140 (MQ=21)

                                                                                                                   cctcctGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGTTCTGACCAGTCATGCGCCAgcgc             >  1:212562/1‑140 (MQ=255)

                                                                                                                    ctcctGCAACATGTCCAAGCAGTCAACATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGTTCTGACCAGTCATGCGCCAGcgcg            <  1:933084/140‑1 (MQ=255)

                                                                                                                    ctcctGCAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGTTCTGACCAGTCATGCGCCAGcgcg            <  2:566420/140‑1 (MQ=255)

                                                                                                                          cAACATGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCGTTAAGCTCCGCAAGACTTTCTGACCAGTCAAGCGCCAGCGCGTTGTCt      >  2:765830/1‑140 (MQ=255)

                                                                                                                              aTGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGTTCTGACCAGTCATGCGCCAGCGCGTTGTCTTCCg  <  1:2386495/140‑1 (MQ=255)

                                                                                                                              aTGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGTTCTGACCAGTCATGCGCCAGCGCGTTGTCTTCCg  >  2:2400447/1‑140 (MQ=255)

                                                                                                                              aTGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGTTCTGACCAGTCATGCGCCAGCGCGTTGTCTTCCg  <  1:2059288/140‑1 (MQ=255)

                                                                                                                              aTGTCAAAGCAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGTTCTGACCAGTCATGCGCCAGCGCGTTGTCTTCCg  >  2:1590197/1‑140 (MQ=255)

                                                                                                                              aTGTCAAAGCAGTCATCATCCACATCGGTCGCAGGCGAGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGTTCTGACCAGTCATGCGCCAGCGCGTTGTCTTCCg  <  1:732839/140‑1 (MQ=255)

                                                                                                                              aTGTCAAAGCAGTCATCATCCAAATTGGTGGCAGGCGGGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGTTCTGACCAGTCATGCGCCAGCGCGTTGTCTTCCg  <  1:1211128/140‑1 (MQ=255)

ATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTGCAAAGCTCCTCCTGCAACATGTCAAAGTAGTCATCATCCAGATCGGTGGCAGGCGTGCCGGTCTGGGGGTTACCACGGGTACGGGGGATTACCAAAGGCAGCACCTTTAAGCTCCGCAAGACGTTCTGACCAGTCATGCGCCAGCGCGTTGTCTTCCG  >  NC_000913/2471935‑2472200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`