BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,564,534	A→G	E4E (GAA→GAG)	yffS →	CPZ‑55 prophage; uncharacterized protein YffS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,564,534	0	A	G	100.0%	775.7 / NA	215	E4E (GAA→GAG)	yffS	CPZ‑55 prophage; uncharacterized protein YffS
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (105/110); total (105/110)

Only 100 of 218 total aligned reads displayed.

CCAATACACCCGGCCCCTCGCCGGGTTTTTTGTGATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTA  >  NC_000913/2564397‑2564670

ccAATACACCCGGCCCCTCGCCGGGTTTTTTGTGATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGAt                                                                                                                                        >  1:1826685/1‑140 (MQ=255)

  aaTACACCCGGCCCCTCGCCGGGTTTTTTGTGATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTACGTGACGGGAGATCAAAATGATGAGTTACGAGATCa                                                                                                                                      >  2:1196161/1‑140 (MQ=255)

    tACACCCGGCCCCTCGCCGGGTTTTTTGTGATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCaaa                                                                                                                                    <  1:1974785/140‑1 (MQ=255)

       acCCGGCCCCTCGCCGGGTTTTTTGTGATCTGCGTCAATATTCCCTTACGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAAtt                                                                                                                                 >  2:2292404/1‑140 (MQ=255)

         ccGGCCCCTCGCCGGGTTTTTTGTGATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTg                                                                                                                               <  1:1702914/140‑1 (MQ=255)

         ccGGCCCCTCGCC‑GGTTTTTTGTGATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGAGTCTATGAGCTGGGAGAGAAAAATCAAGAGTCACGAGATCAAAATTTGc                                                                                                                              >  2:732128/1‑140 (MQ=255)

          cGGCCCCTCGCCGGGTTTTTTGTGATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAGAAAGCAGGAGTTAAGAGATCAAAATTTGc                                                                                                                              >  1:733760/1‑140 (MQ=255)

           ggCCCCTCGCCGGGTTTTTTGTGATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCg                                                                                                                             >  2:2427984/1‑140 (MQ=255)

           ggCCCCTCGCCGGGTTTTTTGTGATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATACTATGAGAAGGGAGATAAAAATCATTAGTTACGAGATCAAAATTTGCg                                                                                                                             >  2:912704/1‑140 (MQ=255)

           ggCCCCTCGCCGGGTTTTTTGTGATATGCTTCAATATACCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCg                                                                                                                             <  1:1130111/140‑1 (MQ=255)

             ccccTCGCCGGGTTTTTTGTGATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGAc                                                                                                                           <  1:1884953/140‑1 (MQ=255)

              cccTCGCCGGGTTTTTTGTGATTTGCGTCAATATTTCCTGCCGTTACGATTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACa                                                                                                                          <  2:755643/140‑1 (MQ=255)

                  cGCCGGGTTTTTTGTGATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGACATGGGAGACAAAGAACTTGAGTTACGAGATCTAAATTTGAGACATCCt                                                                                                                      >  2:1134805/1‑140 (MQ=255)

                       ggTTTTTTGTGATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGTGACATCCTCAAAg                                                                                                                 >  1:2065188/1‑140 (MQ=255)

                          tttttGTGATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGTGACATCCTCAAAGgcg                                                                                                              <  2:2065188/140‑1 (MQ=255)

                              tgtgATCTGCGTCAATATTCCCGTCCGTTCCGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGc                                                                                                          <  1:955761/140‑1 (MQ=255)

                                   tCTGCGTCAATATTCCCTTCCGATAGGCTTACCCTCCCCCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATgg                                                                                                     <  1:1014216/140‑1 (MQ=255)

                                    cTGCGTCAATATTCCCTTCCGTTACGCTTTCCCTCCATCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGa                                                                                                    <  1:912704/140‑1 (MQ=255)

                                    cTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGa                                                                                                    <  2:196028/140‑1 (MQ=255)

                                    cTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTCACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGa                                                                                                    <  2:2455775/140‑1 (MQ=255)

                                     tGCGTCAATATT‑CCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAg                                                                                                  <  2:459385/140‑1 (MQ=255)

                                       cGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCCAAATTTGCGACATCCTCAAAGACGCTGCGATGGAAgg                                                                                                 >  1:1063734/1‑140 (MQ=255)

                                       cGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAgg                                                                                                 >  2:2383999/1‑140 (MQ=255)

                                       cGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAgg                                                                                                 >  2:1777751/1‑140 (MQ=255)

                                       cGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAgg                                                                                                 >  1:2169301/1‑140 (MQ=255)

                                       cGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAgg                                                                                                 >  1:543018/1‑140 (MQ=255)

                                       cGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAgg                                                                                                 >  2:1926468/1‑140 (MQ=255)

                                        gTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGa                                                                                                <  2:1574446/140‑1 (MQ=255)

                                        gTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGa                                                                                                <  1:191656/140‑1 (MQ=255)

                                        gTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGa                                                                                                <  2:2446619/140‑1 (MQ=255)

                                        gTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGa                                                                                                <  1:319452/140‑1 (MQ=255)

                                        gTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGa                                                                                                <  2:170444/140‑1 (MQ=255)

                                        gTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGa                                                                                                <  2:1826685/140‑1 (MQ=255)

                                        gTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGa                                                                                                <  1:2069773/140‑1 (MQ=255)

                                        gTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGa                                                                                                <  1:2033529/140‑1 (MQ=255)

                                        gTCAATATTCCCTTCCGTTACGCTTACCCGCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGa                                                                                                <  1:1196161/140‑1 (MQ=255)

                                        gTCAATATTCCCTTCCGCTACGCTTACCCTCCACCCATAGGCGTGTTATCCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGa                                                                                                <  2:741797/140‑1 (MQ=255)

                                           aaTATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACaa                                                                                             <  2:1231843/140‑1 (MQ=255)

                                               ttCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAAtata                                                                                         <  1:2027088/140‑1 (MQ=255)

                                                 cccTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAg                                                                                       >  2:2159332/1‑140 (MQ=255)

                                                       cGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGa                                                                                                <  2:419459/125‑1 (MQ=255)

                                                       cGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGa                                                                                                >  2:33637/1‑125 (MQ=255)

                                                       cGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGa                                                                                                <  1:33637/125‑1 (MQ=255)

                                                       cGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCt                                                                                 >  1:2144301/1‑140 (MQ=255)

                                                         ttACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGa                                                                                                <  1:347234/123‑1 (MQ=255)

                                                         ttACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGa                                                                                                >  2:347234/1‑123 (MQ=255)

                                                         ttACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGa                                                                                                <  1:158189/123‑1 (MQ=255)

                                                         ttACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGa                                                                                                >  2:2344288/1‑123 (MQ=255)

                                                           aCGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAAc                                                                             >  2:2048744/1‑140 (MQ=255)

                                                             gCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGt                                                                           <  2:323092/140‑1 (MQ=255)

                                                                 aCCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTgggg                                                                       >  2:2033374/1‑140 (MQ=255)

                                                                  cccTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGc                                                                      <  2:2144301/140‑1 (MQ=255)

                                                                   ccTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGcc                                                                     <  2:543018/140‑1 (MQ=255)

                                                                      ccaccaATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCaaa                                                                  >  1:583282/1‑140 (MQ=255)

                                                                      ccaccaATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCaaa                                                                  >  2:303666/1‑140 (MQ=255)

                                                                       caccaATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAAt                                                                 >  1:184359/1‑140 (MQ=255)

                                                                       caccaATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAACGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAAt                                                                 >  2:1066736/1‑140 (MQ=255)

                                                                            aTACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCgag                                                            >  1:407214/1‑140 (MQ=255)

                                                                             tACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCgagg                                                           >  2:1658545/1‑140 (MQ=255)

                                                                               cgcgTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAACCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACCATATAAGTGCGCTCAACGTGGTGCCAAATGCgaggag                                                         >  1:835551/1‑140 (MQ=255)

                                                                                 cgTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTGAATGTGGGGTCAAATGCGAGGAGAt                                                       >  1:1142404/1‑140 (MQ=255)

                                                                                 cgTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGAt                                                       >  2:1385697/1‑140 (MQ=255)

                                                                                 cgTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGAt                                                       >  2:8117/1‑140 (MQ=255)

                                                                                   tgtTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCg                                                     >  2:488433/1‑140 (MQ=255)

                                                                                     ttAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTTAACATGGGGCCAAGTGCGAGGAGATCGCa                                                   >  1:1037589/1‑140 (MQ=255)

                                                                                     ttAACCTCCCAATGGATTCTATCAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGATAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCa                                                   <  2:1058658/140‑1 (MQ=255)

                                                                                             ccAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGtt                                           >  2:1373309/1‑140 (MQ=255)

                                                                                              cAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGATATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTa                                          >  2:1622080/1‑140 (MQ=255)

                                                                                                    aTTCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGc                                    >  1:1335277/1‑140 (MQ=255)

                                                                                                      tCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCg                                     <  1:941826/137‑1 (MQ=255)

                                                                                                      tCTATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCg                                  >  1:2259992/1‑140 (MQ=255)

                                                                                                        tATGAGATGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCggg                                <  1:366841/140‑1 (MQ=255)

                                                                                                             gaTGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGtt                           >  2:2128122/1‑140 (MQ=255)

                                                                                                             gaTGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGtt                           >  2:173183/1‑140 (MQ=255)

                                                                                                              aTGGGAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTa                          >  1:244078/1‑140 (MQ=255)

                                                                                                                gggAGATAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTaaa                        <  1:2279936/140‑1 (MQ=255)

                                                                                                                  gagaTAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTaaaaa                      <  2:583282/140‑1 (MQ=255)

                                                                                                                  gagaTAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTaaaaa                      <  1:303666/140‑1 (MQ=255)

                                                                                                                  gagaTAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGACAAATGCGAGGAGATCGCAAACGAGATAACTGGCCGGGGAGTTaaaaa                      >  2:1123277/1‑140 (MQ=255)

                                                                                                                  gagaTAAAAATCATGAGTTACGAGATCAAAATTTGCGACACCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGGCAAATGCGGGGATATCGCAAACGAGGTAACGCGCCGGGGAGTTaaaaa                      >  2:675749/1‑140 (MQ=255)

                                                                                                                     aTAAAAATCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAaacaa                   <  1:1452651/140‑1 (MQ=255)

                                                                                                                        aaaaTCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCGGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAAcaacaa                >  1:1296580/1‑140 (MQ=255)

                                                                                                                            tCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCACCGTGGGGCCAAATGCGAGGAGATCGCAACCGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGga            <  2:2002907/140‑1 (MQ=255)

                                                                                                                            tCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGga            <  1:44665/140‑1 (MQ=255)

                                                                                                                            tCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGga            <  2:184359/140‑1 (MQ=255)

                                                                                                                            tCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGga            <  1:1385697/140‑1 (MQ=255)

                                                                                                                            tCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGga            <  1:2417162/140‑1 (MQ=255)

                                                                                                                            tCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGga            <  2:1335277/140‑1 (MQ=255)

                                                                                                                            tCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGga            <  1:2296434/140‑1 (MQ=255)

                                                                                                                            tCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGga            <  1:1777751/140‑1 (MQ=255)

                                                                                                                            tCATGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGACCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGga            <  1:490430/140‑1 (MQ=255)

                                                                                                                              aTGAGTTACGAGATCTAAATTTGCGCCACTCTCAAAGCCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGgaga          <  1:675749/140‑1 (MQ=255)

                                                                                                                              aTGAGTTACGAGATCCAAATTTACGACATCCTCAAAGACGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGgaga          <  1:725090/140‑1 (MQ=255)

                                                                                                                              aTGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGgaga          <  2:2210652/140‑1 (MQ=255)

                                                                                                                              aTGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGgaga          <  1:1658545/140‑1 (MQ=255)

                                                                                                                              aTGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGgaga          <  1:2378032/140‑1 (MQ=255)

                                                                                                                               tGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGgaga          >  1:256889/1‑139 (MQ=255)

                                                                                                                               tGAGTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGgaga          <  2:256889/139‑1 (MQ=255)

                                                                                                                                  gTTACGAGATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGtt      <  2:2259992/140‑1 (MQ=255)

                                                                                                                                   ttACGAGATCAAAATTTCCGACATCCTCAAATGCGTTGCGATGGAAGGTCAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGtta     <  2:1037589/140‑1 (MQ=255)

CCAATACACCCGGCCCCTCGCCGGGTTTTTTGTGATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTA  >  NC_000913/2564397‑2564670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`