Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 390,331 A→G pseudogene (81/1458 nt) yaiT → putative autotransporter YaiT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913390,3310AG99.6% 791.3 / NA 220pseudogene (81/1458 nt)yaiTputative autotransporter YaiT
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base G (100/119);  total (100/120)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 237 total aligned reads displayed.

TTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCAGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGTTTTGTCTATTACAACAACACCAATGG  >  NC_000913/390194‑390465
                                                                                                                                         |                                                                                                                                      
ttCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATgcggc                                                                                                                                      >  1:274623/1‑140 (MQ=255)
ttCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATgcggc                                                                                                                                      >  1:269008/1‑140 (MQ=255)
 tCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATgcggca                                                                                                                                     <  2:2163484/140‑1 (MQ=255)
 tCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATgcggca                                                                                                                                     <  2:1844725/140‑1 (MQ=255)
 tCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATgcggca                                                                                                                                     <  1:1328657/140‑1 (MQ=255)
 tCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATgcggca                                                                                                                                     >  2:334403/1‑140 (MQ=255)
  cTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAAGTAGCATTGACTTACACGCTGGCTATAACCTATCAGGCTAATGCGGCaa                                                                                                                                    >  2:715707/1‑140 (MQ=255)
     tGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACt                                                                                                                                 >  2:1935479/1‑140 (MQ=255)
      gCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTa                                                                                                                                >  2:2453328/1‑140 (MQ=255)
       cATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTAt                                                                                                                               <  1:2453328/140‑1 (MQ=255)
       cATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTAt                                                                                                                               <  2:269008/140‑1 (MQ=255)
        aTTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATg                                                                                                                              >  2:1363457/1‑140 (MQ=255)
          tGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGAt                                                                                                                            >  1:109876/1‑140 (MQ=255)
           gATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATa                                                                                                                           >  2:245866/1‑140 (MQ=255)
            aTAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATgcggca                                                                                                                                     >  2:1814934/1‑129 (MQ=255)
            aTAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATgcggca                                                                                                                                     <  1:1814934/129‑1 (MQ=255)
             tAATTGATGGATCAACTTATTACGTCCCTGAGTAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATAcc                                                                                                                         <  2:2315134/140‑1 (MQ=255)
             tAATTGATGGATCAACAGATTAGGTCCCTGAGGAGTGATTACAAATGCTCTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATAcc                                                                                                                         <  2:1172455/140‑1 (MQ=255)
              aaTTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCt                                                                                                                        >  2:522249/1‑140 (MQ=255)
                 tGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATAcc                                                                                                                         <  1:352159/136‑1 (MQ=255)
                   aTGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCAGCTCTCAGACTAATGAGGCAAAATATGATACCTGGACt                                                                                                                   >  1:1196358/1‑140 (MQ=255)
                   aTGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTAt                                                                                                                               >  2:1589402/1‑128 (MQ=255)
                   aTGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACt                                                                                                                   >  2:2262265/1‑140 (MQ=255)
                      gATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTtat                                                                                                                <  2:274623/140‑1 (MQ=255)
                       aTCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCAAATGCGGCAAACTATGATACCTGGACTtata                                                                                                               >  2:723004/1‑140 (MQ=255)
                        tCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTatat                                                                                                              >  1:627447/1‑140 (MQ=255)
                          aaCTTATTACGTCCCTGAGGAGCGACGACCAATGCACACCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCg                                                                                                            <  1:715707/140‑1 (MQ=255)
                                 taCGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATcc                                                                                                     >  1:1731002/1‑140 (MQ=255)
                                  cagTCCCTGAGGAGGTATGACACATCCACCCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATccc                                                                                                    <  1:1179573/138‑1 (MQ=255)
                                      cccTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAAt                                                                                                       >  2:1681296/1‑133 (MQ=255)
                                      cccTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTa                                                                                                >  2:2050569/1‑140 (MQ=255)
                                         tGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGTACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAAATATGATACCTGGACTTATATCGATAATCCCGTTACAg                                                                                             >  1:853640/1‑140 (MQ=255)
                                           aggaggGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCa                                                                                           <  2:2356577/140‑1 (MQ=255)
                                            ggaggGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCAc                                                                                          <  2:354219/140‑1 (MQ=255)
                                            ggaggGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCAc                                                                                          <  1:245866/140‑1 (MQ=255)
                                             gaggGATGACAAATGGACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACt                                                                                         <  1:1083143/140‑1 (MQ=255)
                                             gaggGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACt                                                                                         >  1:219607/1‑140 (MQ=255)
                                                ggATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGa                                                                                      >  1:1011103/1‑140 (MQ=255)
                                                ggATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGAAAACTATGTTACTTGGCCTTATATCGATAATCCCGTTACAGCACTTGa                                                                                      >  2:827560/1‑140 (MQ=255)
                                                 gATGACAAATGCACTTCTGGAACAATAAATTTGTAGTTTCACAATTAGCATTGGCTTGCACTCTGGCTATCGCCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGAt                                                                                     <  1:724534/140‑1 (MQ=255)
                                                 gATGACAAATGCACTCCTGGAAAAAGAAACTGGTAATATAACAATTAGGATTGGCTTGTACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGAt                                                                                     <  2:853640/140‑1 (MQ=255)
                                                  aTGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCAc                                                                                          <  2:1641585/134‑1 (MQ=255)
                                                  aTGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCAc                                                                                          >  1:1641585/1‑134 (MQ=255)
                                                  aTGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGAtt                                                                                    >  2:326705/1‑140 (MQ=255)
                                                  aTGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGAtt                                                                                    >  2:113231/1‑140 (MQ=255)
                                                     aCAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTggg                                                                                 <  1:1620391/140‑1 (MQ=255)
                                                     aCAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACT‑‑TATCGATAATCCCGTTACAGCACTTGATTGGGAt                                                                               >  1:2162713/1‑140 (MQ=255)
                                                       aaaTGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGAt                                                                               <  2:219607/140‑1 (MQ=255)
                                                          tGCACTCCTGGAAAAAGAAACTTGTTGTAGCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCACGTTACAGCACTTGATTGGGATCat                                                                            <  1:885235/140‑1 (MQ=255)
                                                          tGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCat                                                                            <  1:2119649/140‑1 (MQ=255)
                                                          tGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCat                                                                            <  2:1550706/140‑1 (MQ=255)
                                                          tGCACTCCTGGAAAAAGAAACTAGTAGTATCACAATTAGGATTGGCTTACACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCat                                                                            <  2:746094/140‑1 (MQ=255)
                                                                ccTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGAt                                                                      <  2:1902351/140‑1 (MQ=255)
                                                                    gAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAagg                                                                  >  1:1264625/1‑140 (MQ=255)
                                                                     aaaaaGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAaggc                                                                 <  1:251054/140‑1 (MQ=255)
                                                                       aaaGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAaggcag                                                               <  1:2262265/140‑1 (MQ=255)
                                                                        aaGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAaggcagg                                                              <  1:2384878/140‑1 (MQ=255)
                                                                             aCTTGTAGTATCACATTTAGCATTGACTTTCACTCTGCCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTg                                                         <  1:827560/140‑1 (MQ=255)
                                                                                  tagtaTCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGAt                                                    <  2:1731002/140‑1 (MQ=255)
                                                                                      aacccaATTAACATTGGCTTGCCCTCTGGCTTTTCCCTCCCCAGGTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCa                                                <  1:543805/136‑1 (MQ=255)
                                                                                      aTCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCa                                                <  1:522249/140‑1 (MQ=255)
                                                                                       tCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCaa                                               <  1:1917226/140‑1 (MQ=255)
                                                                                       tCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCaa                                               <  1:1553090/140‑1 (MQ=255)
                                                                                        cacaATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAAc                                              >  2:2438273/1‑140 (MQ=255)
                                                                                           aaTTAGCACTGGCTTGGACTCTAGCTATCAGATCTCAGGCTAATGCGGGAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTAt                                           <  2:1214742/140‑1 (MQ=255)
                                                                                            aTTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCAGTTGATTGGTATCGTATTGATAAGGCGGGCATTGTAGATGGCAACTATg                                          >  2:684353/1‑140 (MQ=255)
                                                                                            aTTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATg                                          <  1:2363570/140‑1 (MQ=255)
                                                                                              tAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTa                                        <  1:330255/140‑1 (MQ=255)
                                                                                              tAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTa                                        <  1:2413205/140‑1 (MQ=255)
                                                                                               aGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTTATTGGGATGATAGGGACAAGGCAGGAACTGGAGATGGCAACTATGTaa                                       >  2:897396/1‑140 (MQ=255)
                                                                                               aGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCACATGGATATGGCAGGAACTGTATATGGCAACTATGTaa                                       >  1:976980/1‑140 (MQ=255)
                                                                                                    tGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACtat                                  >  1:2132573/1‑140 (MQ=255)
                                                                                                     ggCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTaa                                       <  1:2034097/134‑1 (MQ=255)
                                                                                                     ggCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTa                                        <  2:442239/133‑1 (MQ=255)
                                                                                                     ggCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTa                                        >  1:442239/1‑133 (MQ=255)
                                                                                                     ggCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTGAACtata                                 >  2:2121164/1‑140 (MQ=255)
                                                                                                     ggCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACtata                                 >  2:440761/1‑140 (MQ=255)
                                                                                                     ggCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACtata                                 >  2:1281256/1‑140 (MQ=255)
                                                                                                     ggCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACtata                                 <  1:1363457/140‑1 (MQ=255)
                                                                                                     ggCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACtata                                 >  1:609593/1‑140 (MQ=255)
                                                                                                           cACTCTGGTTATCACCGCTCAGTCTAATGCAACGAACTACGATACCTGTACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGtt                           <  2:1195260/140‑1 (MQ=255)
                                                                                                           cACTCTGGCTATCACCTGTCAGGCTAATGCGGCAATCTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGtt                           <  2:1046685/140‑1 (MQ=255)
                                                                                                           cACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGtt                           >  1:1679313/1‑140 (MQ=255)
                                                                                                           cACTCTGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGtt                           <  2:138687/140‑1 (MQ=255)
                                                                                                              tctGGCTATCACCTCTCAGGCTTATGCGGCACACTCTGACACCTGGACATATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGTTTTg                        <  2:1011103/140‑1 (MQ=255)
                                                                                                                tGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGTTTTg                        >  1:1392200/1‑138 (MQ=255)
                                                                                                                tGGCTATCACCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGTTTTGTc                      >  2:1522587/1‑140 (MQ=255)
                                                                                                                   cTATCACCTCTCAGGCTAATGCGGCAAACTATGATTCCTGGACTTATAGCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGTTTTGTCTAt                   <  2:1085142/140‑1 (MQ=255)
                                                                                                                      tccccTCTCATGCTATTGCGGCCAATTATCATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGTTTTGTCTATTac                <  1:926321/137‑1 (MQ=255)
                                                                                                                        aCCTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGTCACTGTAGGTGGGAACCATGTAAACTATAGGGGTTTTGTCTATTacaa              >  2:754191/1‑140 (MQ=255)
                                                                                                                         ccTCTTAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGTTTTGTCTATTacaac             <  2:2327883/140‑1 (MQ=255)
                                                                                                                         ccTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGTTTTGTCTATTacaac             <  2:1394149/140‑1 (MQ=255)
                                                                                                                         ccTCTCAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGTTTTGTCTATTacaac             <  1:1335929/140‑1 (MQ=255)
                                                                                                                            ctcAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGtt                           <  2:610533/123‑1 (MQ=255)
                                                                                                                            ctcAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGTTTTGTCTAt                   <  2:1794374/131‑1 (MQ=255)
                                                                                                                            ctcAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGTTTTGTCTAt                   >  1:1794374/1‑131 (MQ=255)
                                                                                                                            ctcAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGTTTTGTCTATTacaacaa           >  2:587918/1‑139 (MQ=255)
                                                                                                                            ctcAGGCTAATGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGTTTTGTCTATTacaacaa           <  1:587918/139‑1 (MQ=255)
                                                                                                                                    aaTGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGTTTTGTCTATTACAACAACACCAATgg  >  1:2284017/1‑140 (MQ=255)
                                                                                                                                    aaTGCGGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGTTTTGTCTATTACAACAACACCAATgg  >  2:2031995/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                      
TTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCAGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGTTTTGTCTATTACAACAACACCAATGG  >  NC_000913/390194‑390465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: