BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,344,042	T→C	G33G (GGT→GGC)	lptB →	lipopolysaccharide transport system ATP binding protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,344,042	0	T	C	100.0%	614.9 / NA	173	G33G (GGT→GGC)	lptB	lipopolysaccharide transport system ATP binding protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (88/85); total (88/85)

Only 100 of 173 total aligned reads displayed.

GGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGTCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATTGATGATGACGATATCAGTCTGCTGCCTCTGCATGCACGCGCGCGCCGC  >  NC_000913/3343905‑3344177

ggCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCct                                                                                                                                       >  1:445151/1‑140 (MQ=255)

          cGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGAGGTCAGCCTGACCCTCAACTCCGGGGGAATTTTCGGCCTGCTGGGGCCa                                                                                                                             >  2:1046103/1‑140 (MQ=255)

           ggCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCaa                                                                                                                            >  2:1613603/1‑140 (MQ=255)

           ggCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCaa                                                                                                                            >  1:1670736/1‑140 (MQ=255)

           ggCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCaa                                                                                                                            >  1:1619005/1‑140 (MQ=255)

            gCACAGAAGAAGGGTTATTAATCCGCTATCGCAACATCAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCaaa                                                                                                                           <  1:802259/140‑1 (MQ=255)

            gCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCaaa                                                                                                                           <  1:1752427/140‑1 (MQ=255)

                  aagaagGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCAGACCGTCAACTCGGGGGAAATTGTCGGCCTTCTGGGGCCAAACGGTGc                                                                                                                     >  2:1097475/1‑140 (MQ=255)

                            attaattCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAAGTCCGGGGAAATTGTCGGCCTGCTGGTGCCAAACGGTGCCGGTAAGacc                                                                                                           >  2:692518/1‑140 (MQ=255)

                            attaattCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGacc                                                                                                           >  1:605999/1‑140 (MQ=255)

                            attaattCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGacc                                                                                                           >  2:85234/1‑140 (MQ=255)

                            attaattCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGacc                                                                                                           >  2:2010789/1‑140 (MQ=255)

                            attaattCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGacc                                                                                                           >  1:2287242/1‑140 (MQ=255)

                             ttaattCGTTATGGCTACATTACCTGCAAGGAACCTTCCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGacca                                                                                                          <  1:1046103/140‑1 (MQ=255)

                             ttaattCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACgg                                                                                                                        >  1:1631881/1‑126 (MQ=255)

                             ttaattCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACgg                                                                                                                        <  2:1631881/126‑1 (MQ=255)

                              taattCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGaccac                                                                                                         <  2:329830/140‑1 (MQ=255)

                                attCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGAccacca                                                                                                       <  1:2010789/140‑1 (MQ=255)

                                 ttCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACcaccac                                                                                                      <  2:2387986/140‑1 (MQ=255)

                                 ttCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACcaccac                                                                                                      >  2:2393215/1‑140 (MQ=255)

                                  tCGTTATGGCAACATTATCTGCTAAGAACCTCGCATAAGTCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACt                                                                                                     <  2:790070/140‑1 (MQ=255)

                                  tCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGt                                                                                                                 <  2:1388707/128‑1 (MQ=255)

                                  tCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACt                                                                                                     >  2:1365205/1‑140 (MQ=255)

                                  tCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACt                                                                                                     >  1:589409/1‑140 (MQ=255)

                                  tCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACt                                                                                                     <  1:1796482/140‑1 (MQ=255)

                                  tCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACt                                                                                                     >  2:337046/1‑140 (MQ=255)

                                    gTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGTAATTGTCGGCCTCCTGGGGCCAAACGGTGCTGGTAAGACCACCACttt                                                                                                   >  2:1060560/1‑140 (MQ=255)

                                    gTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACttt                                                                                                   >  2:1565679/1‑140 (MQ=255)

                                      tATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCAAAAGGGAGCCGGTAAGACCACCACTTTCt                                                                                                 >  1:702231/1‑140 (MQ=255)

                                        tGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGacca                                                                                                          >  2:205190/1‑129 (MQ=255)

                                        tGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGacca                                                                                                          <  1:205190/129‑1 (MQ=255)

                                         ggCAACATTAACTGCAAAGAACTTTGCAAAACCCTATAAAGGCCGTCGGGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACa                                                                                              <  2:953275/140‑1 (MQ=255)

                                         ggCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACa                                                                                              <  2:2251627/140‑1 (MQ=255)

                                         ggCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACa                                                                                              <  2:427951/140‑1 (MQ=255)

                                         ggCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACa                                                                                              <  1:311679/140‑1 (MQ=255)

                                         acagaCATTGACTGCAAAGAACGTTGCAAGAGCCTATTAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACa                                                                                              <  1:1108713/136‑1 (MQ=255)

                                           cAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTAGGCCTGCTGGGGACAAACGGTGCCGTTAAGACCACCACTGTCTACATg                                                                                            >  2:1187880/1‑140 (MQ=255)

                                                ttAACTGCAAAGAACCTTGCAAAAGTCTATAAAGGCCATCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGt                                                                                       <  1:1070473/140‑1 (MQ=255)

                                                ttAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGt                                                                                       <  1:1990495/140‑1 (MQ=255)

                                                ttAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCATCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGt                                                                                       <  1:1187880/140‑1 (MQ=255)

                                                  aaCTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGGTGGGGCCAAACGATGCGGGTAAGACCACCAGTTTCTACATGGTTGTAg                                                                                     >  2:965663/1‑140 (MQ=255)

                                                  aaCTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAg                                                                                     >  1:174874/1‑140 (MQ=255)

                                                    cTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGc                                                                                   >  1:2111509/1‑140 (MQ=255)

                                                     tGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCa                                                                                  >  2:1750305/1‑140 (MQ=255)

                                                     tGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCa                                                                                  >  1:2229837/1‑140 (MQ=255)

                                                        aaaGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGGCAAACGGTGCCGGTAAAACCACCACGTTCTACATGGTTGTAGGCATtg                                                                               >  2:752393/1‑140 (MQ=255)

                                                        aaaGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATtg                                                                               >  1:1890912/1‑140 (MQ=255)

                                                        aaaGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCAGGTAAGAGCACAACGTTCTACATGGTTGTAGGCATtg                                                                               >  1:738828/1‑140 (MQ=255)

                                                        aaaGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGACAAACGGTTCCGATAAAACCACCACCTTCTTCATGGTTGTAGGcctgt                                                                               >  2:1108713/1‑136 (MQ=255)

                                                         aaGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACa                                                                                              <  1:36532/124‑1 (MQ=255)

                                                         aaGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACa                                                                                              >  2:255033/1‑124 (MQ=255)

                                                         aaGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCCGTAAGACCACCACTTTCTACATGGTTGTAGGcctgtc                                                                              >  1:970248/1‑135 (MQ=255)

                                                               cTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGt                                                                                       <  1:1885666/125‑1 (MQ=255)

                                                               cTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGt                                                                                       >  2:1885666/1‑125 (MQ=255)

                                                               cTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCcgcg                                                                        >  2:1663429/1‑140 (MQ=255)

                                                                 tGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACAACCACTTGCTAGATCGTTGTACGCATTGTGCcgcgcg                                                                      >  1:1176711/1‑140 (MQ=255)

                                                                   cAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCATCTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGAt                                                                    <  1:487827/140‑1 (MQ=255)

                                                                      aaGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTTAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCg                                                                 >  1:546073/1‑140 (MQ=255)

                                                                        gCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCggg                                                               >  2:71197/1‑140 (MQ=255)

                                                                        gCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCggg                                                               <  2:311217/140‑1 (MQ=255)

                                                                        gCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCggg                                                               <  1:1565679/140‑1 (MQ=255)

                                                                         ccTATAAAGGCCGTCGCGTGGTTGATGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGc                                                              <  1:1021225/140‑1 (MQ=255)

                                                                         ccTATAAAGGCCGTCGCGTGGTGGAGGACGTCAGCCTCACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGc                                                              <  1:1201421/140‑1 (MQ=255)

                                                                         ccTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGc                                                              <  1:1500617/140‑1 (MQ=255)

                                                                         ccTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGc                                                              <  2:1907136/140‑1 (MQ=255)

                                                                         ccTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGc                                                              <  1:337046/140‑1 (MQ=255)

                                                                           tataAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGTGGGCaa                                                            <  1:85234/140‑1 (MQ=255)

                                                                           tataAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCaa                                                            <  2:19441/140‑1 (MQ=255)

                                                                            ataAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAAc                                                           <  2:2343582/140‑1 (MQ=255)

                                                                            ataAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAAc                                                           <  2:605999/140‑1 (MQ=255)

                                                                                  gCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCatt                                                     >  1:1974011/1‑140 (MQ=255)

                                                                                  gCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCatt                                                     >  2:2172244/1‑140 (MQ=255)

                                                                                  gCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATAGTTCTCGGCATTGTGCCGCGCTATGCGGGCCACATCatt                                                     >  2:1184365/1‑140 (MQ=255)

                                                                                  gCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACGTTCTACATGGTTGTAGGCATTGTGCAGCGCAATGCGGGCAACATCatt                                                     >  2:664953/1‑140 (MQ=255)

                                                                                    cggcgcgTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTGCTACATGGTTGTGGGCGTTGTGCCGAGCGAAGCGGGCAACATCattat                                                   >  2:664071/4‑140 (MQ=255)

                                                                                    cGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCaa                                                            <  1:2358584/131‑1 (MQ=255)

                                                                                     gTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCattatt                                                  >  2:504237/1‑140 (MQ=255)

                                                                                     gTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCattatt                                                  >  2:2323981/1‑140 (MQ=255)

                                                                                             gTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATtgatgatga                                          <  2:2149622/140‑1 (MQ=255)

                                                                                             gTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATtgatgatga                                          <  1:2323981/140‑1 (MQ=255)

                                                                                             gTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATtgatgatga                                          <  2:170862/140‑1 (MQ=255)

                                                                                                    aCGTCAGCCTGACCGTCCACTCCGGGGAAATAGTCCGCCAGCTGGGGCAAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATTGATGATGACGATATc                                   <  2:738828/140‑1 (MQ=255)

                                                                                                      gTCAGCCTGACCGTCGACTCCGGGGAAATGGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATTGATGATGACGATATCAg                                 <  1:1108195/140‑1 (MQ=255)

                                                                                                      gTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAAGCAGTGTGCCGCGCGATGCGAGCAACATCGTTATAGATGATGACGATATCAg                                 >  2:697667/1‑140 (MQ=255)

                                                                                                        cAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATtgatgat                                            >  2:1228716/1‑127 (MQ=255)

                                                                                                        cAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATtgatgat                                            <  1:1228716/127‑1 (MQ=255)

                                                                                                        cAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATtgatg                                              <  2:537462/125‑1 (MQ=255)

                                                                                                        cAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATTGATGATGACGATATCAGTc                               >  1:1874180/1‑140 (MQ=255)

                                                                                                        cAGCCTGACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTCTGCCGCGCAATGAGGGCAACATCATTATTGATGATGACGATATCAGTc                               >  2:888782/1‑140 (MQ=255)

                                                                                                              gACCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATTGATGATGACGATATCAGTCtgctgc                         <  1:487877/140‑1 (MQ=255)

                                                                                                               aCCGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATTGATGATGACGATATCAGTCTGCTGcc                        >  1:1847909/1‑140 (MQ=255)

                                                                                                                ccGTCAACTCCGGGGAAATTGTCGGCCTGCTGGGGTCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATTGATGATGACGATATCAGTCTGCTGCct                       <  2:1416773/140‑1 (MQ=255)

                                                                                                                     aaCTCCGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATTGATGATGACGATATCAGTCTGCTGCCTCtgca                  >  1:1467356/1‑140 (MQ=255)

                                                                                                                          cGGGGAAATTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATTGATGATGACGATATCAGTCTGCTGCCTCTGCATGCAc             >  2:2218386/1‑140 (MQ=255)

                                                                                                                               aaaTTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATTGATGATGACGATATCAGTCTGCTGCCTCTGCATGCAcgcgcg        <  1:1374795/140‑1 (MQ=255)

                                                                                                                               aaaTTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATTGATGATGACGATATCAGTCTGCTGCCTCTGCATGCAcgcgcg        <  2:2287383/140‑1 (MQ=255)

                                                                                                                                 aTTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATTGATGATGACGATATCAGTCTGCTGCCTCTGCATGCAcgcgcgcg      <  2:174874/140‑1 (MQ=255)

                                                                                                                                 aTTGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATTGATGATGACGATATCAGTCTGCTGCCTCTGCATGCAcgcgcgcg      >  1:1391251/1‑140 (MQ=255)

                                                                                                                                   tGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATTGATGATGACGATATCAGTCTGCTGCCTCTGCATGCACGCGCGcgcc    <  2:1860283/140‑1 (MQ=255)

                                                                                                                                   tGTCGGCCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATTGATGATGACGATATCAGTCTGCTGCCTCTGCATGCACGCGCGcgcc    <  2:462990/140‑1 (MQ=255)

GGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGACCGTCAACTCCGGGGAAATTGTCGGTCTGCTGGGGCCAAACGGTGCCGGTAAGACCACCACTTTCTACATGGTTGTAGGCATTGTGCCGCGCGATGCGGGCAACATCATTATTGATGATGACGATATCAGTCTGCTGCCTCTGCATGCACGCGCGCGCCGC  >  NC_000913/3343905‑3344177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`