Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,413,816 T→C intergenic (‑351/‑48) envR ← / → acrE DNA‑binding transcriptional repressor EnvR/multidrug efflux pump membrane fusion lipoprotein AcrE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,413,8160TC98.5% 695.7 / NA 196intergenic (‑351/‑48)envR/acrEDNA‑binding transcriptional repressor EnvR/multidrug efflux pump membrane fusion lipoprotein AcrE
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (87/105);  minor base A (2/1);  total (90/106)
Fisher's exact test for biased strand distribution p-value = 5.93e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 197 total aligned reads displayed.

TAAAACAGTAGAATATTAATCTTTTTTTGTGTTTATGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGTTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCTTTAATCGCCGGTTGTAACGATAAGGGAG  >  NC_000913/3413683‑3413948
                                                                                                                                     |                                                                                                                                    
tAAAACAGTAGAATATTCATCTCTTTTTGTGTTTACGTGCCTTGAGATTCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCtt                                                                                                                                <  2:679188/140‑1 (MQ=255)
 aaaaCAGTAGAATATTAATCTTCTTCTGTCTTTATGTCCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCttt                                                                                                                               <  1:680996/140‑1 (MQ=255)
  aaaCAGTAGAATATTTATCTTTTTTTGTGATTATGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCtttt                                                                                                                              <  1:810854/140‑1 (MQ=255)
  aaaCAGTAGAATATTAATCTTTTTTTGTGTTTATGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCtttt                                                                                                                              <  2:2012822/140‑1 (MQ=255)
  aaaCAGTAGAATATTAATCTTTTTTTGTGTTGATGGGCCATGAGATGCATGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCtttt                                                                                                                              <  2:901681/140‑1 (MQ=255)
   aaCAGTAGAATATTAATCTTTTTTTGTGTTTATGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCttttt                                                                                                                             >  1:237737/1‑140 (MQ=255)
        tAGAATATTAATCTTTTTTTGTGTTTATGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCttt                                                                                                                               >  2:2390794/1‑133 (MQ=255)
           aaTATTAATCTTTTTTTGTGTTTATGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGTACTGTATTTTTCATTCAGCGAGTTAACGCGCTGCCTTTTTGGGTAAAt                                                                                                                     >  2:1061459/1‑140 (MQ=255)
             tatTAATCTTTTTTTGTGTTTATGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGTGTTCACGCGCTGCATTTTTGGGTAAATaa                                                                                                                   >  1:901681/1‑140 (MQ=255)
               ttAATCTTTTTTTGTGTTTATGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAAcg                                                                                                                 <  1:2050214/140‑1 (MQ=255)
                  aTCTTTTTTTGTGTTTATGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACgcgc                                                                                                              >  1:301340/1‑140 (MQ=255)
                  aTCTTTTTTTGTGTTTATGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACgcgc                                                                                                              >  1:583395/1‑140 (MQ=255)
                  aTCTTTTTTTGTGTTTATGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACgcgc                                                                                                              >  1:2072101/1‑140 (MQ=255)
                     tttttttGTGTTTATGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCttt                                                                                                           >  2:1062677/1‑140 (MQ=255)
                     tttttttGTGTTTATGTGACTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCttt                                                                                                           <  1:2306551/140‑1 (MQ=255)
                       tttttGTGTTTATGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTg                                                                                                         >  1:1066832/1‑140 (MQ=255)
                            gtgtTTATGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGtttt                                                                                                    <  1:2412078/140‑1 (MQ=255)
                               tttATGTGCCTTGAGGTGCCTGGATCCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTg                                                                                                 <  1:1061459/140‑1 (MQ=255)
                               tttATGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGATGCCTTTGTGGGTATATAACGGGCTTTTGGTTTTTTg                                                                                                 >  1:728321/1‑140 (MQ=255)
                                 tATGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAg                                                                                               >  1:1546588/1‑140 (MQ=255)
                                 tATGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTACCTTTTTGGGTAAATAACGCGATTTTGGTTTTTTGAg                                                                                               >  1:1123712/1‑140 (MQ=255)
                                  aTGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAgg                                                                                              <  2:2159161/140‑1 (MQ=255)
                                  aTGTGCCTTGAGATGCCTGTATTCATAACTAATCCATACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAgg                                                                                              <  2:973498/140‑1 (MQ=255)
                                     tgCCTTGAGATGCCTGTATTCATAAATATTCCTTACAACGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAAt                                                                                           <  1:979765/140‑1 (MQ=255)
                                     ngCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAAt                                                                                           <  2:614614/139‑1 (MQ=255)
                                       ccTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAg                                                                                         >  2:1965280/1‑140 (MQ=255)
                                         ttGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAgg                                                                                              >  2:2195091/1‑133 (MQ=255)
                                         ttGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTa                                                                                       <  2:1737398/140‑1 (MQ=255)
                                          tGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTaa                                                                                      >  2:1728347/1‑140 (MQ=255)
                                          tGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGATGCCTTTTCGGGTAGACAACGCGCTGTTGGGATTTTGAGGAATAGTaa                                                                                      >  2:1131668/1‑140 (MQ=255)
                                            agaTGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATg                                                                                    <  1:1383810/140‑1 (MQ=255)
                                             gaTGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGa                                                                                   <  1:2270580/140‑1 (MQ=255)
                                                 ccTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATCACGCGCTATTGGTTTTTTGAGGAATAGTAATGACGaa                                                                               >  1:824864/1‑140 (MQ=255)
                                                 ccTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGa                                                                                             <  1:1337167/126‑1 (MQ=255)
                                                  cTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGaaa                                                                              >  1:1753344/1‑140 (MQ=255)
                                                     tATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACAt                                                                           >  2:1318296/1‑140 (MQ=255)
                                                     tATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGAGTAAATAACGCGCTATTGGTTTTTTAAGGAATAGTAATGACGAAACAt                                                                           >  2:1075567/1‑140 (MQ=255)
                                                       ttCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGc                                                                         <  1:627775/140‑1 (MQ=255)
                                                          aTAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAg                                                                      >  2:417272/1‑140 (MQ=255)
                                                          aTAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAg                                                                      >  2:2041564/1‑140 (MQ=255)
                                                           tAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTGGGTTTTTAGAGTAAGAGTAATGACGAAACATGCCAgg                                                                     >  1:656112/1‑140 (MQ=255)
                                                            aaCTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAg                                                                      <  1:2407263/138‑1 (MQ=255)
                                                            aaCTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGt                                                                    >  1:1961122/1‑140 (MQ=255)
                                                               tATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGTAATAGTGATGACGTAACATGCCAGGtttt                                                                 >  1:1160835/1‑140 (MQ=255)
                                                               tATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGtttt                                                                 >  1:444927/1‑140 (MQ=255)
                                                                 ttCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTtc                                                               >  2:2412968/1‑140 (MQ=255)
                                                                 ttCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTtc                                                               >  1:2328797/1‑140 (MQ=255)
                                                                 ttCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTtc                                                               >  2:277895/1‑140 (MQ=255)
                                                                 ttCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTtc                                                               >  2:2376578/1‑140 (MQ=255)
                                                                 ttCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTCTTGAGGAGTAGAAATGACGAAACATGCCAGGTTTTtc                                                               >  1:1062473/1‑140 (MQ=255)
                                                                  tCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTtcc                                                              >  2:1220382/1‑140 (MQ=255)
                                                                   ccTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTtcct                                                             >  2:590746/1‑140 (MQ=255)
                                                                    cTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTtcctc                                                            >  1:1935936/1‑140 (MQ=255)
                                                                    cTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTtcctc                                                            <  2:466396/140‑1 (MQ=255)
                                                                    cTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTtcctc                                                            <  2:1814403/140‑1 (MQ=255)
                                                                     ttACATCGCCGAATGACTATTTGTAGGATAGCGTACTGTATTTTTCTTCCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTtcctcc                                                           <  2:1098246/140‑1 (MQ=255)
                                                                     ttACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTtcctcc                                                           <  1:277895/140‑1 (MQ=255)
                                                                      tACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTcctcct                                                          >  1:1417599/1‑140 (MQ=255)
                                                                       aCATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTg                                                         <  2:1753344/140‑1 (MQ=255)
                                                                         aTCGACGAATGATAATTTGTAGGATAGCGAACTGTTTTTGTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGcc                                                       <  2:822500/140‑1 (MQ=255)
                                                                         aTCGACGAATGATAATTTGTAGGATAGCGAACTGTCTTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGcc                                                       <  2:1407248/140‑1 (MQ=255)
                                                                         aTCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGcc                                                       <  2:2328797/140‑1 (MQ=255)
                                                                         aTCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGcc                                                       <  2:1440487/140‑1 (MQ=255)
                                                                         aTCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGcc                                                       <  1:1728347/140‑1 (MQ=255)
                                                                         aTCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGcc                                                       <  1:1533495/140‑1 (MQ=255)
                                                                         aTCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGcc                                                       >  1:2431591/1‑140 (MQ=255)
                                                                         aTCGACGAATGATAATTCGTAGCATAGCGAACTGTCTTTCTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGcc                                                       <  2:656112/140‑1 (MQ=255)
                                                                             acgaATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTtcc                                                              <  2:576258/129‑1 (MQ=255)
                                                                             acgaATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCcctcc                                                   >  2:228999/1‑140 (MQ=255)
                                                                             acgaATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCcctcc                                                   >  1:2180282/1‑140 (MQ=255)
                                                                             acgaATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCcctcc                                                   >  1:2150190/1‑140 (MQ=255)
                                                                              cgaATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCcctcct                                                  <  1:1802222/140‑1 (MQ=255)
                                                                              cgaATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCcctcct                                                  >  2:536639/1‑140 (MQ=255)
                                                                              cgaATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCcctcct                                                  <  2:1935936/140‑1 (MQ=255)
                                                                              cgaATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCcctcct                                                  <  1:1234801/140‑1 (MQ=255)
                                                                                aaTGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCttt                                                <  1:547122/140‑1 (MQ=255)
                                                                                   gATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTAtt                                             <  1:2187181/140‑1 (MQ=255)
                                                                                           gTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCcctcct                                                  >  2:281883/1‑127 (MQ=255)
                                                                                           gTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGAtctc                                     >  2:12027/1‑140 (MQ=255)
                                                                                            tAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCcctcct                                                  <  1:376025/126‑1 (MQ=255)
                                                                                            tAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCcctcct                                                  >  2:376025/1‑126 (MQ=255)
                                                                                                   gCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCtt                             >  2:1521434/1‑140 (MQ=255)
                                                                                                   gCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCtt                             <  2:1961122/140‑1 (MQ=255)
                                                                                                    cGAACTGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCttt                            >  1:485439/1‑140 (MQ=255)
                                                                                                         tGTATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCTTTAATc                        <  1:1699544/139‑1 (MQ=255)
                                                                                                           tATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCTTTAATCGc                      >  1:1491873/1‑139 (MQ=255)
                                                                                                           tATTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCTTTAATCGc                      <  2:1491873/139‑1 (MQ=255)
                                                                                                            aTTTTTCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCTTTAATCGCCg                    <  2:2185753/140‑1 (MQ=255)
                                                                                                              ttttCTTTCTGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCTTTAATCGCCGGt                  >  2:2362213/1‑140 (MQ=255)
                                                                                                               tttctttcTGCGAGTTAGCGCGATGCCTTTCTGAGGAAAAAACGCGCTATTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCTTTAATCGCCGGtt                 <  2:1160835/140‑1 (MQ=255)
                                                                                                                    ttctGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCTTTAATCGCCGGTTGTAAc            <  1:2494367/140‑1 (MQ=255)
                                                                                                                     tctGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCTTTAATCGCCGGTTGTAACg           >  2:2486884/1‑140 (MQ=255)
                                                                                                                     tctGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCTTTAATCGCCGGTTGTAACg           >  1:1918136/1‑140 (MQ=255)
                                                                                                                     tctGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCTTTAATCGCCGGTTGTAACg           >  1:2362903/1‑140 (MQ=255)
                                                                                                                      ctGCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCTTTAATCGCCGGTTGTAACGa          <  1:2200594/140‑1 (MQ=255)
                                                                                                                        gCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCTTTAATCGCCGGTTGTAACGATa        <  1:1965280/140‑1 (MQ=255)
                                                                                                                        gCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCTTTAATCGCCGGTTGTAACGATa        <  2:1648112/140‑1 (MQ=255)
                                                                                                                        gCGAGTTAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGAGCTCCGCGGCTTTAATCGCCGGTTGTAACGATa        <  2:1348825/140‑1 (MQ=255)
                                                                                                                             ttAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCTTTAATCGCCGGTTGTAACGATAAGGga   <  2:1738044/140‑1 (MQ=255)
                                                                                                                              tAACGCGCTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCTTTAATCGCCGGTTGTAACGATAAGGgag  <  2:2114932/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                    
TAAAACAGTAGAATATTAATCTTTTTTTGTGTTTATGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGTTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAATGACGAAACATGCCAGGTTTTTCCTCCTGCCCTCCTTTATTCTGATCTCCGCGGCTTTAATCGCCGGTTGTAACGATAAGGGAG  >  NC_000913/3413683‑3413948

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: