BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,735,669	G→A	A231T (GCC→ACC)	xylR →	DNA‑binding transcriptional dual regulator XylR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,735,669	0	G	A	100.0%	495.6 / NA	157	A231T (GCC→ACC)	xylR	DNA‑binding transcriptional dual regulator XylR
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (88/69); total (88/69)

Only 100 of 158 total aligned reads displayed.

CCGGGATTATTGCCGTTACTGACGCCCGAGCGCGGCATATTCTGCAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCTC  >  NC_000913/3735532‑3735805

ccGGGATTATTGCCGTTACTGACGCCCGAGCGCGGCATATTCTGCAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCAcc                                                                                                                                        <  2:2436992/140‑1 (MQ=255)

    gATTATTGCCGTTACTGACGCCCGAGCGCGGCATATTCTGCAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACACGCTATCTGACGCGTGTCACCCttt                                                                                                                                    >  1:1139567/1‑140 (MQ=255)

           gCCGTTACTGACGCCCGAGCGCGGCATATTCTGCAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGt                                                                                                                             >  1:371320/1‑140 (MQ=255)

               ttACTGACGCCCGAGCGCGGCATATTCTGCAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCt                                                                                                                         >  2:272333/1‑140 (MQ=255)

                 aCTGACGCCCGAGCGCGGCATATTCTGCAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGTGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCa                                                                                                                       >  1:1493531/1‑140 (MQ=255)

                 aCTGACGCCCGAGCGCGGCATATTCTGCAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCa                                                                                                                       >  1:2416816/1‑140 (MQ=255)

                 aCTGACGCCCGAGCGCGGCATATTCTGCAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCa                                                                                                                       >  1:494616/1‑140 (MQ=255)

                 aCTGACGCCCGAGCGCGGCATATTCTGCAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCa                                                                                                                       >  2:494456/1‑140 (MQ=255)

                 aCTGACGCCCGAGCGCGGCATATTCTGCAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCa                                                                                                                       >  1:519813/1‑140 (MQ=255)

                        cccGAGCGCGGCATATTCTGCAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGgcgcg                                                                                                                <  2:1842987/140‑1 (MQ=255)

                         ccGAGCGCGGCATATTCTGCAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGgcgcgc                                                                                                               <  2:2120989/140‑1 (MQ=255)

                         ccGAGCGCGGCATATTCTGCAAGTATGTGAACATCTACATAATCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGgcgcgc                                                                                                               >  1:18237/1‑140 (MQ=255)

                            aGCGCGGCATATTCTGCAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCAGCTATCTGGCGCCTGTAACCCTTTCTTCGGCCGCTCAGGGCGCGCGGc                                                                                                            >  2:1010544/1‑140 (MQ=255)

                               gcgGCATATTCTGCAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCaaa                                                                                                         <  1:110838/140‑1 (MQ=255)

                               gcgGCATAATCTGCAACTATGTCAACATCTAAATATTCCCGTACCGGATAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCaaa                                                                                                         <  2:1099096/140‑1 (MQ=255)

                                cgGCATATTCTGCAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAAt                                                                                                        <  1:1375267/140‑1 (MQ=255)

                                            cAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAggc                                                                                            >  2:547965/1‑140 (MQ=255)

                                             aaGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAggcg                                                                                           >  1:1649534/1‑140 (MQ=255)

                                                 aTGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCaa                                                                                       >  1:2065581/1‑140 (MQ=255)

                                                 aTGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCaa                                                                                       <  2:443685/140‑1 (MQ=255)

                                                  tgtgAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCaaa                                                                                      >  1:1527567/1‑140 (MQ=255)

                                                  tgtgAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCaaa                                                                                      >  1:2342715/1‑140 (MQ=255)

                                                  tgtgAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCaaa                                                                                      >  1:357274/1‑140 (MQ=255)

                                                  tgtgAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCACTCAGGGGGCGTGGGAAATGGGCTATCAGGCGGCaaa                                                                                      >  1:762280/1‑140 (MQ=255)

                                                      aaCATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTg                                                                                  >  2:213832/1‑140 (MQ=255)

                                                         aTCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTg                                                                               >  1:29461/1‑140 (MQ=255)

                                                         aTCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTg                                                                               >  2:2284163/1‑140 (MQ=255)

                                                         aTCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTg                                                                               >  2:71936/1‑140 (MQ=255)

                                                          tCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGGGCGCGGCCAATGGGTTATCAGACGGCAAAACTGTTGc                                                                              >  1:1190273/1‑140 (MQ=255)

                                                          tCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGGGCGCGGCCAATCGGTTATCAGGCGGCAAAACTGTTGc                                                                              >  1:981192/1‑140 (MQ=255)

                                                          tCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGc                                                                              >  1:1256298/1‑140 (MQ=255)

                                                           cTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCa                                                                             >  2:154249/1‑140 (MQ=255)

                                                           cTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCa                                                                             <  1:71936/140‑1 (MQ=255)

                                                           cTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCa                                                                             <  1:154249/140‑1 (MQ=255)

                                                           cTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCa                                                                             >  1:229431/1‑140 (MQ=255)

                                                           cTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCa                                                                             <  2:582266/140‑1 (MQ=255)

                                                           cTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGACGCTCAGGTCGCTCGGGAAATGGGCTATCATGCGGCAAAACTGTTGCa                                                                             >  2:774695/1‑140 (MQ=255)

                                                           cTACATATTCCCGTACCGGAAAAATAATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCa                                                                             <  1:1010544/140‑1 (MQ=255)

                                                            tACATATTTCCGTACCCGAAAATTTATGCGCTATTTGCATCGATAACGTAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCAt                                                                            <  2:1198849/140‑1 (MQ=255)

                                                            tACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCAt                                                                            <  2:538723/140‑1 (MQ=255)

                                                            tACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCAt                                                                            >  1:86200/1‑140 (MQ=255)

                                                             aCATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATc                                                                           <  2:2065581/140‑1 (MQ=255)

                                                             aCATATTCCCGTACCGAAAAAACTATGCGTGGTTGTCATGGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATc                                                                           <  2:1139567/140‑1 (MQ=255)

                                                                  ttCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGatta                                                                      <  2:18237/140‑1 (MQ=255)

                                                                  ttCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGatta                                                                      <  2:371320/140‑1 (MQ=255)

                                                                   tCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCAGCAAAACTGTTGCATCGattat                                                                     >  1:1073224/1‑140 (MQ=255)

                                                                    cccGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGattatt                                                                    <  2:176924/140‑1 (MQ=255)

                                                                     ccGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGAttatta                                                                   >  2:2150847/1‑140 (MQ=255)

                                                                     ccGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGAttatta                                                                   >  2:1751193/1‑140 (MQ=255)

                                                                     ccGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGAttatta                                                                   >  1:1337240/1‑140 (MQ=255)

                                                                     ccGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGAttatta                                                                   >  2:306538/1‑140 (MQ=255)

                                                                      cGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAg                                                                  >  1:1246177/1‑140 (MQ=255)

                                                                       gTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTTCATCGATTATTAGa                                                                 <  2:1532546/140‑1 (MQ=255)

                                                                        tACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGattat                                                                     <  1:1690578/135‑1 (MQ=255)

                                                                        tACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGattat                                                                     >  2:1690578/1‑135 (MQ=255)

                                                                        tACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGAt                                                                >  2:461893/1‑140 (MQ=255)

                                                                             gAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAaaga                                                           >  1:561458/1‑140 (MQ=255)

                                                                             gAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAaaga                                                           >  1:2047092/1‑140 (MQ=255)

                                                                               aaaaTTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAAGCGGCAAAACTATTACATCGAGTATTAGATAaagaag                                                         >  1:751673/1‑140 (MQ=255)

                                                                                aaaTTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAagaaga                                                        <  2:494616/140‑1 (MQ=255)

                                                                                aaaTTATGCGTGATTCGCATCGTTATCGACGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAagaaga                                                        <  1:774695/140‑1 (MQ=255)

                                                                                  aTTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGaaa                                                      <  2:1435068/140‑1 (MQ=255)

                                                                                     aTGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGc                                                   <  1:1573826/140‑1 (MQ=255)

                                                                                     aTGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTGGCATCGATTATTATATAAAGAAGAAATGc                                                   >  1:1006650/1‑140 (MQ=255)

                                                                                       gCGTGATTGGCATCGATAACGATGATCTGTCCCGCTAACTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCg                                                 <  1:725145/140‑1 (MQ=255)

                                                                                            aTTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACa                                            >  1:2149309/1‑140 (MQ=255)

                                                                                            aTTGGCATCGATAACGAAGAACAGACCCGCTATCTCTCGAGTGTCACCATTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACa                                            <  2:673081/140‑1 (MQ=255)

                                                                                             ttGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAg                                           >  2:125219/1‑140 (MQ=255)

                                                                                             ttGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAg                                           >  1:579450/1‑140 (MQ=255)

                                                                                             ttGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCACTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAg                                           <  1:349528/140‑1 (MQ=255)

                                                                                              tGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGc                                          <  1:1922165/140‑1 (MQ=255)

                                                                                              tGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGc                                          <  1:1439288/140‑1 (MQ=255)

                                                                                                  aTCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAAt                                      >  1:2441457/1‑140 (MQ=255)

                                                                                                      aTAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTg                                  >  1:425722/1‑140 (MQ=255)

                                                                                                       tAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTgg                                 >  2:1994255/1‑140 (MQ=255)

                                                                                                       tAACGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTgg                                 <  1:363297/140‑1 (MQ=255)

                                                                                                          cGAAGAACTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTcc                              >  1:420709/1‑140 (MQ=255)

                                                                                                           gaagaaCTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTccc                             <  1:213832/140‑1 (MQ=255)

                                                                                                           gaagaaCTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTccc                             <  2:2416816/140‑1 (MQ=255)

                                                                                                             agaaCTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCccac                           >  1:1992178/1‑140 (MQ=255)

                                                                                                               aaCTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGAGAAAGAAGAAATGCCGCAACAGCGAATTTTGGTCccacca                         >  2:870130/1‑140 (MQ=255)

                                                                                                                 cTGACCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGt                       >  1:1801500/1‑140 (MQ=255)

                                                                                                                    aCCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTcg                    >  2:2366895/1‑140 (MQ=255)

                                                                                                                    aCCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTcg                    <  1:461893/140‑1 (MQ=255)

                                                                                                                    aCCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTcg                    <  2:1801500/140‑1 (MQ=255)

                                                                                                                    aCCCGCTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAACTTTGGTCCCACCAGTTcg                    >  1:227286/1‑140 (MQ=255)

                                                                                                                    aCCCGCTATCTGTCGCGGGTCATCCTTTCTTTGGTCGCTGAGGGCGCGAGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTcg                    <  2:773741/140‑1 (MQ=255)

                                                                                                                         cTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAACTGCCGCTACAGCGAATATTGGGCCCACCAGTTCGCGTCa               >  2:1061978/1‑140 (MQ=255)

                                                                                                                         cTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCa               >  2:191029/1‑140 (MQ=255)

                                                                                                                         cTATCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCa               >  1:115002/1‑140 (MQ=255)

                                                                                                                            tCTGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTg            >  1:2062068/1‑140 (MQ=255)

                                                                                                                              tGTCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGaa          <  1:1751396/140‑1 (MQ=255)

                                                                                                                                tCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACg        <  1:2281173/140‑1 (MQ=255)

                                                                                                                                tCGCGTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTACCACCAGTTCGCGTCATTGAACg        <  2:1992178/140‑1 (MQ=255)

                                                                                                                                  gcgTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGTCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGgc      >  1:235032/1‑140 (MQ=255)

                                                                                                                                   cgTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGgcg     >  1:67383/1‑140 (MQ=255)

                                                                                                                                   cgTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGgcg     <  1:1994255/140‑1 (MQ=255)

                                                                                                                                   cgTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGgcg     <  2:2059011/140‑1 (MQ=255)

                                                                                                                                   cgTGTCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGgcg     <  2:229431/140‑1 (MQ=255)

                                                                                                                                     tgtCACCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCt   <  1:191029/140‑1 (MQ=255)

CCGGGATTATTGCCGTTACTGACGCCCGAGCGCGGCATATTCTGCAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCTC  >  NC_000913/3735532‑3735805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`