BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,849,433	G→A	T235M (ACG→ATG)	uhpB ←	sensory histidine kinase UhpB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,849,433	0	G	A	100.0%	447.8 / NA	131	T235M (ACG→ATG)	uhpB	sensory histidine kinase UhpB
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (66/65); total (66/65)

Only 100 of 131 total aligned reads displayed.

TTAAGTTCACGCAACCGCTGGATGCCAGCGCCAAGCAACAACCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACGTCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATAACAAACAGCAGCA  >  NC_000913/3849298‑3849568

ttAAGTTCACGCAACCGCTGGATGCCAGCGCCAAGCAACAACCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGc                                                                                                                                     <  1:1411124/140‑1 (MQ=255)

     ttCACGCAACCGCTGGATGCCAGCGCCAAGCAACAACCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCa                                                                                                                                >  1:2028125/1‑140 (MQ=255)

      tCACGCAACCGCTGGATGCCAGCGCCAAGCAACAACCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAg                                                                                                                               <  1:2310610/140‑1 (MQ=255)

         cGCAACCGCTGGATGCCAGCGCCAAGCAACAACCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGCTCAGCGCGATGACGCTCATCATCATCGCAATCAgcgc                                                                                                                            >  1:1177816/1‑140 (MQ=255)

         cGCAACCGCTGGATGCCAGCGCCAAGCAACAACCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAgcgc                                                                                                                            >  1:1914302/1‑140 (MQ=255)

         cGCAACCGCTGGATGCCAGCGCCAAGCAACAACCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAgcgc                                                                                                                            >  2:278656/1‑140 (MQ=255)

          gCAACCGCTGGATGCCAGCGCCAAGCAACAACCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGcc                                                                                                                           <  1:2223393/140‑1 (MQ=255)

              ccGCTGGATGCCAGCGCCAAGCAACAACCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCtt                                                                                                                       <  2:2028125/140‑1 (MQ=255)

               cGCTGGATGCCAGCGCCAAGCAACACCCCCGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTg                                                                                                                      <  1:690547/140‑1 (MQ=255)

                 cTGGATGCCAGCGCCAAGCAACAACCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGcc                                                                                                                    <  1:488888/140‑1 (MQ=255)

                 cTGGATGCCAGCGCCAAGCAACAACCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGcc                                                                                                                    <  2:1849345/140‑1 (MQ=255)

                 cTGGATGCCAGCGCCAAGCAACAACACTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGcc                                                                                                                    <  1:888868/140‑1 (MQ=255)

                 cTGGATGCCAGCGCCAACCAACTACCCTGTCTGACCTTGCACCAGCAGTGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGcc                                                                                                                    <  2:764550/140‑1 (MQ=255)

                      tGCCAGCGCCAAGCAACAACCCTGTCAGACTTTGCATCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGTGTTCATCTACACCGCAATCAGTGCCCCTTGCCAACCa                                                                                                               >  1:1061173/1‑140 (MQ=255)

                      tGCCAGCGCCAAGCAACAACCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCa                                                                                                               >  2:379004/1‑140 (MQ=255)

                       gCCAGCGCCAAGCAACAACCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCAt                                                                                                              <  2:260948/140‑1 (MQ=255)

                       gCCAGCGCCAAGCAACAACCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCAt                                                                                                              <  1:1691163/140‑1 (MQ=255)

                       gCCAGCGCCAAGCAACAACCCTCTCAGACTTTGCACCTGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTTACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCAt                                                                                                              <  1:797336/140‑1 (MQ=255)

                        ccAGCGCCAAGCAACAACCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCACAATCAGCGGCCCTTGCCAACCATa                                                                                                             >  1:853760/1‑140 (MQ=255)

                           gcgcCAAGCAACAACCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTg                                                                                                          >  1:175305/1‑140 (MQ=255)

                                 aGCAACAACCCTGTCCGACTTTACACCAGGAGCGAGACCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTgccaggc                                                                                                    <  1:1120154/140‑1 (MQ=255)

                                 aGCAACAACCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTgccaggc                                                                                                    >  1:103425/1‑140 (MQ=255)

                                      caacCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAgcg                                                                                               <  2:2051449/140‑1 (MQ=255)

                                      caacCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAgcg                                                                                               <  1:1285966/140‑1 (MQ=255)

                                      caacCCTGTCAGACTTTACACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAgcg                                                                                               <  2:752723/140‑1 (MQ=255)

                                            tGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATaa                                                                                         >  1:337688/1‑140 (MQ=255)

                                            tGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATaa                                                                                         >  2:2052418/1‑140 (MQ=255)

                                            tGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATaa                                                                                         >  1:279319/1‑140 (MQ=255)

                                             gTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAAt                                                                                        >  1:1311920/1‑140 (MQ=255)

                                             gTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAAt                                                                                        >  2:2234600/1‑140 (MQ=255)

                                                aGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCgg                                                                                     >  2:1313431/1‑140 (MQ=255)

                                                   cTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAg                                                                                  >  1:505162/1‑140 (MQ=255)

                                                   cTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAg                                                                                  >  1:1610172/1‑140 (MQ=255)

                                                     ttGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCTGCGCCCCTTGCCAACCATAGTGCCACGCCATCGCGATAATCGGCAgcg                                                                                >  2:875598/1‑140 (MQ=255)

                                                     ttGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAgcg                                                                                >  1:2176173/1‑140 (MQ=255)

                                                     ttGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAgcg                                                                                <  2:175305/140‑1 (MQ=255)

                                                     ttGCACCACCAGCGAGAGCAATAAATCCACCGGATGATCCCGCCAGGTGTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAgcg                                                                                <  2:1177816/140‑1 (MQ=255)

                                                        cACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCca                                                                             >  1:1426050/1‑140 (MQ=255)

                                                          ccAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCcaga                                                                           <  2:2303887/140‑1 (MQ=255)

                                                          ccAGCAGCGAGAGCAATAAATCAACCGGATGATCGGGCCTGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCcaga                                                                           <  2:853760/140‑1 (MQ=255)

                                                             gcagcGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATCGTGCCAGTCCAGCGAGATAATCGGCAGCGCcagacag                                                                        >  1:815029/1‑140 (MQ=255)

                                                                 cGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATg                                                                    >  1:44053/1‑140 (MQ=255)

                                                                        aaTAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTaaa                                                             <  1:2226775/140‑1 (MQ=255)

                                                                               ccACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGAc                                                      <  2:1886148/140‑1 (MQ=255)

                                                                                 aCCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATGGGCTGCGCCAGAAAGAATGGCGTACAGCGCGACAg                                                    >  2:772664/1‑140 (MQ=255)

                                                                                 aCCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAg                                                    >  2:119740/1‑140 (MQ=255)

                                                                                 aCCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAg                                                    >  1:572900/1‑140 (MQ=255)

                                                                                 aCCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGAGCCGGAAAGAATGGCGTAAAGCGCGACAg                                                    >  1:795586/1‑140 (MQ=255)

                                                                                  ccGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGt                                                   >  1:2438725/1‑140 (MQ=255)

                                                                                  ccGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAAGCGGCAGCTCCAGACGGAATGGTGTAAAGCGCGACAGt                                                   >  1:643146/1‑140 (MQ=255)

                                                                                     gatgatCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCg                                                <  2:1450386/140‑1 (MQ=255)

                                                                                     gatgatCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCg                                                >  1:1900027/1‑140 (MQ=255)

                                                                                     gatgatCGCGCCAGGTTCGACTTGCGATCAGCGCGTTGGCGTTCATCACCATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCg                                                <  2:643146/140‑1 (MQ=255)

                                                                                      atgatCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGt                                               >  2:242247/1‑140 (MQ=255)

                                                                                        gatCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTcc                                             >  1:2036693/1‑140 (MQ=255)

                                                                                          tCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCgg                                           <  2:156492/140‑1 (MQ=255)

                                                                                          tCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCgg                                           >  1:2407004/1‑140 (MQ=255)

                                                                                           cgcgCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGGATGACGGAAAGCGCGACAGTTCGTCCGGc                                          >  1:1196440/1‑140 (MQ=255)

                                                                                           cgcgCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGc                                          >  1:2252013/1‑140 (MQ=255)

                                                                                           cgcgCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGc                                          >  1:2253602/1‑140 (MQ=255)

                                                                                           cgcgCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGc                                          <  2:827945/140‑1 (MQ=255)

                                                                                            gcgcCAGGTTTGACTGGTGATCTGCGCGATGCCGTGCATTAACATCGCGATCAGCGCCCCTTGCCAACAATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCa                                         <  2:832311/140‑1 (MQ=255)

                                                                                             cgcCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCaa                                        >  1:2439250/1‑140 (MQ=255)

                                                                                              gcCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCTAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAAt                                       <  2:2252013/140‑1 (MQ=255)

                                                                                              gcCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAAt                                       <  2:2253602/140‑1 (MQ=255)

                                                                                               ccAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATc                                      >  2:1830254/1‑140 (MQ=255)

                                                                                                     ttGACTGGCGATCAGCGCGATGCCGTTCATCTACACCGCCATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACt                                <  2:913644/140‑1 (MQ=255)

                                                                                                      tGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTg                               <  1:2052418/140‑1 (MQ=255)

                                                                                                      tGACTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTg                               <  1:1902584/140‑1 (MQ=255)

                                                                                                      tGACTGGCGATCAGCGCCATGGCGTTCATCATCATCGCACTCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTg                               <  2:678713/140‑1 (MQ=255)

                                                                                                        aCTGGCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGa                             >  2:501717/1‑140 (MQ=255)

                                                                                                            gCGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCa                         >  2:402219/1‑140 (MQ=255)

                                                                                                             cGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCag                        >  1:1387285/1‑140 (MQ=255)

                                                                                                             cGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCag                        <  2:337688/140‑1 (MQ=255)

                                                                                                             cGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCag                        >  2:1001470/1‑140 (MQ=255)

                                                                                                             cGATCAGCGCGATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAAGCCCAACTGGAGCCag                        >  1:1111652/1‑140 (MQ=255)

                                                                                                               aTCAGCGCGATGGCGTTCATCATCATCGCAAGCAGCGCCGCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCagag                      <  2:1061173/140‑1 (MQ=255)

                                                                                                                      cgATGGCGTTCATCAGCATCGCCATCAGCTCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATa               <  1:940249/140‑1 (MQ=255)

                                                                                                                      cgATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATa               >  1:1802072/1‑140 (MQ=255)

                                                                                                                      cgATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATa               >  2:59339/1‑140 (MQ=255)

                                                                                                                      cgATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATa               >  1:2209530/1‑140 (MQ=255)

                                                                                                                      cgATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATa               <  1:402219/140‑1 (MQ=255)

                                                                                                                       gATGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATaa              >  1:1432825/1‑140 (MQ=255)

                                                                                                                         tGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATaaca            >  1:1768902/1‑140 (MQ=255)

                                                                                                                         tGGCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATaaca            <  1:1001470/140‑1 (MQ=255)

                                                                                                                           gCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATaacaaa          <  2:1900027/140‑1 (MQ=255)

                                                                                                                           gCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATaacaaa          <  2:1395988/140‑1 (MQ=255)

                                                                                                                           gCGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATaacaaa          >  2:498038/1‑140 (MQ=255)

                                                                                                                            cGTTCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATaacaaac         <  2:1768902/140‑1 (MQ=255)

                                                                                                                              ttCATCAACATCGCAGTCAGCGACCGTTGCCAACCATTGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATAACAAAcag       <  1:933571/140‑1 (MQ=255)

                                                                                                                              ttCATCAACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATAACAAAcag       <  1:1830254/140‑1 (MQ=255)

                                                                                                                                catcaACATCGCAATCATCGCCCCTTGCCAAACATTGTGACAGGCCAGTGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATAACAAAcagca     <  2:918131/140‑1 (MQ=255)

                                                                                                                                catcaACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGATACTGATAACAAAcagca     >  1:1793136/1‑140 (MQ=255)

                                                                                                                                  tcaACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGGGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGATTGATAACAAACagcagc   <  1:278656/140‑1 (MQ=255)

                                                                                                                                  tcaACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATAACAAACagcagc   <  2:44053/140‑1 (MQ=255)

                                                                                                                                  tcaACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATAACAAACagcagc   <  2:1898593/140‑1 (MQ=255)

                                                                                                                                  tcaACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATAACAAACagcagc   <  2:1802072/140‑1 (MQ=255)

                                                                                                                                  tcaACATCGCAATCAGCGCCCCCTGCCAACTATAGCGCCCGGCCAGCGGGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATAACAAACagcagc   <  2:1196440/140‑1 (MQ=255)

                                                                                                                                   caACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATAACAAACAgcagca  <  2:505162/140‑1 (MQ=255)

                                                                                                                                   caACATCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATAACAAACAgcagca  <  1:862043/140‑1 (MQ=255)

TTAAGTTCACGCAACCGCTGGATGCCAGCGCCAAGCAACAACCCTGTCAGACTTTGCACCAGCAGCGAGAGCAATAAATCCACCGGATGATCGCGCCAGGTTTGACTGGCGATCAGCGCGATGGCGTTCATCAACGTCGCAATCAGCGCCCCTTGCCAACCATAGTGCCAGGCCAGCGCGATAATCGGCAGCGCCAGACAGAATGGCGTAAAGCGCGACAGTTCGTCCGGCAATCCCAACTGGAGCCAGAGACTGATAACAAACAGCAGCA  >  NC_000913/3849298‑3849568

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`