BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,104,208	A→G	R256R (CGT→CGC)	cpxA ←	sensory histidine kinase CpxA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,104,208	0	A	G	100.0%	435.3 / NA	122	R256R (CGT→CGC)	cpxA	sensory histidine kinase CpxA
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (63/59); total (63/59)

Only 100 of 125 total aligned reads displayed.

GCGTTTTTTTGCTGATTACGTGACATCACCAACAGATCGTTGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGACGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGTTAAAACTGGCACCTGCGGCAAGGAATTCCTGTGGCCCCGCTTC  >  NC_000913/4104071‑4104342

gcgTTTTTTTGCTGATTACGTGACATCACCAACAGATCGTTGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGTCGTACCCAGTTGCAGGcg                                                                                                                                      >  1:2089782/1‑140 (MQ=255)

    ttttttGCTGATTACGTGACATCACCAACAGATCGTTGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTCTCACCGCTCCGACGACGCAGTAACGCCGTAACCAGTTGCAGGCGCGTc                                                                                                                                  >  2:1079773/1‑140 (MQ=255)

     tttttGCTGATTACGTGACATCACCAACAGATCGTTGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTCCACCGCTACGACGGCGTAGTAACGCTGTACCCAGTTGCAGGCGCGTCa                                                                                                                                 >  2:1020015/1‑140 (MQ=255)

         tGCTGATTACGTGACATCACCAACAGATCGTTGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCgg                                                                                                                             >  2:1862407/1‑140 (MQ=255)

              aTTACGTGACATCACCAACAGATCGTTGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGCAACGCCGTACCCAGTTGCAGGAGCGTCAGCGGGGTgc                                                                                                                        >  1:924816/1‑140 (MQ=255)

               ttACGTGACATCACCCACAGATCGTAGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTgcg                                                                                                                       <  1:692891/140‑1 (MQ=255)

               ttACGTGACATCACCACAAGATCGTTGATCACGCTTTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTgcg                                                                                                                       <  2:1088575/140‑1 (MQ=255)

               ttACGTGACATCACCAATAGATTGTTGATCATGCTGTCCTGACGTTGCTCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTgcg                                                                                                                       <  2:1003073/140‑1 (MQ=255)

               ttACGTGACATCACCAACAGATCGTTGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTgcg                                                                                                                       <  1:1841322/140‑1 (MQ=255)

                 aCGTGACATCACCAACAGATCGTTGATCAAGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCa                                                                                                                     <  1:1213395/140‑1 (MQ=255)

                       cATCACCAACAGATCGTTGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGt                                                                                                               <  2:1335009/140‑1 (MQ=255)

                        gtCACCAACAGATCGTGCATCAAGCTGTCCTAAGGATGCCCTTCGGTTACAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTg                                                                                                              <  2:1206387/139‑1 (MQ=255)

                        aTCACCAACAGATCGTTGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTg                                                                                                              <  1:2127740/140‑1 (MQ=255)

                         tCACCAACAGATCGTTGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCCGGCGCGTCAGCGGTGTGCGCAGCTCGTga                                                                                                             >  1:1132226/1‑140 (MQ=255)

                           aCCAACAGATCGTTGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTgaga                                                                                                           <  1:1231328/140‑1 (MQ=255)

                             cAACAGATCGTTGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTgagaga                                                                                                         <  1:1641480/140‑1 (MQ=255)

                             cAACAGATCGTTGATCATGCTGTCCAGACGTTGCGCTCCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTgagaga                                                                                                         <  1:1079773/140‑1 (MQ=255)

                                 aGATCGTTGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATc                                                                                                     >  2:1331799/1‑140 (MQ=255)

                                   aTCGTTGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAg                                                                                                   >  2:443787/1‑140 (MQ=255)

                                   aTCGTTGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTCTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAg                                                                                                   >  2:160016/1‑140 (MQ=255)

                                    tCGTTGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGAGCGTCAGGGGGGTGAGCAGCTGGTGAGAGATATCAgc                                                                                                  >  1:1206387/1‑139 (MQ=255)

                                     cGTTGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGaa                                                                                                 >  1:1930531/1‑140 (MQ=255)

                                     cGTTGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGaa                                                                                                 >  1:1242468/1‑140 (MQ=255)

                                          aTCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAg                                                                                            >  2:1505672/1‑140 (MQ=255)

                                          aTCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGGCAGGGGGGTGCGCAGCGCGTGAGAGATATCAGAAAGCAg                                                                                            >  2:752870/1‑140 (MQ=255)

                                           tCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACTGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGa                                                                                           >  2:389565/1‑140 (MQ=255)

                                           tCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGa                                                                                           <  1:1907659/140‑1 (MQ=255)

                                           tCATGCTGACCAGACGGTGCGCCTCGGTTTCAACATGCTCCAGTTCCTAGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGa                                                                                           <  2:1132226/140‑1 (MQ=255)

                                           gagacaggTCCAGACGCTGCGCGTCGGTTTGTATAAGCTACAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGa                                                                                           <  2:1185382/133‑1 (MQ=255)

                                             aTGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTgaga                                                                                                           <  2:272928/122‑1 (MQ=255)

                                             aTGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTgaga                                                                                                           >  1:272928/1‑122 (MQ=255)

                                             aTGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACg                                                                                         <  1:49819/140‑1 (MQ=255)

                                             aTGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACg                                                                                         <  1:1862407/140‑1 (MQ=255)

                                             aTGCTGTCCAGACGTTGCGCTTCGGTTTCAACACGGTCCTGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACg                                                                                         <  2:642635/140‑1 (MQ=255)

                                             aTGCTGTCCAGACGTTGCGCTTCGGTTTCAAAACGTTCCCGTTCCTTGTTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACg                                                                                         <  2:932151/140‑1 (MQ=255)

                                               gCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACgct                                                                                       >  2:1841690/1‑140 (MQ=255)

                                               gCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACgct                                                                                       >  1:1085428/1‑140 (MQ=255)

                                                   tCCAGACGTTGCGCTTCGGTTTTAATACGCTCCAGCTCCATGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGctgctg                                                                                   <  2:914613/140‑1 (MQ=255)

                                                   tCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAAAGTTATCAGGAAGCAGACGctgctg                                                                                   >  1:1070266/1‑140 (MQ=255)

                                                    ccAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACgc                                                                                        <  1:1664992/134‑1 (MQ=255)

                                                    ccAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACgc                                                                                        >  2:1664992/1‑134 (MQ=255)

                                                    ccAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTga                                                                                  >  2:2190000/1‑140 (MQ=255)

                                                    ccAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTga                                                                                  <  1:1331799/140‑1 (MQ=255)

                                                    ccAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTga                                                                                  >  1:199523/1‑140 (MQ=255)

                                                     cAGACGTTGCGCTTCTGTTTCATTAGGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTgag                                                                                 <  1:856860/140‑1 (MQ=255)

                                                     cAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACg                                                                                         <  2:29373/132‑1 (MQ=255)

                                                     cAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACg                                                                                         >  1:29373/1‑132 (MQ=255)

                                                     cAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTgag                                                                                 <  2:458569/140‑1 (MQ=255)

                                                     cAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTgag                                                                                 <  1:1789550/140‑1 (MQ=255)

                                                     cAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTgag                                                                                 >  2:1367290/1‑140 (MQ=255)

                                                        aCGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTgag                                                                                 <  1:2353282/137‑1 (MQ=255)

                                                        aCGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAgg                                                                              >  1:518047/1‑140 (MQ=255)

                                                         cGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGAGGTGCGCAGCTCATTAGAGATATCAGAAAGAAGACGCTGCTGAGAGGt                                                                             >  2:1116622/1‑140 (MQ=255)

                                                             gcgcTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGctgctg                                                                                   <  1:2302192/130‑1 (MQ=255)

                                                             gcgcTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGctgctg                                                                                   >  2:2302192/1‑130 (MQ=255)

                                                             gcgcTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGtcatc                                                                         >  1:2147015/1‑140 (MQ=255)

                                                             gcgcTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGtcatc                                                                         >  2:2137220/1‑140 (MQ=255)

                                                             gcgcTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGtcatc                                                                         >  1:1718329/1‑140 (MQ=255)

                                                             gcgcTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGtcatc                                                                         >  1:1698327/1‑140 (MQ=255)

                                                             gcgcTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGtcatc                                                                         >  2:1773684/1‑140 (MQ=255)

                                                             gcgcTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATAGCAGAAAGCAGACGATGCTGAGAGGtcatc                                                                         >  1:914613/1‑140 (MQ=255)

                                                             gcgcTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTCAGAGATATCAGCAACCAGACGGTGCTGAGAGGtcatc                                                                         >  1:1071158/1‑140 (MQ=255)

                                                             gcgcTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTAAGAGATATCAGGAATCAGACGCTGCTGAGAGGtcatc                                                                         >  1:862271/1‑140 (MQ=255)

                                                             gcgcTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTAAGAGATAGCAGAAATCAGACGTTGCTGAGAGGtcatc                                                                         >  1:645568/1‑140 (MQ=255)

                                                             gcgcTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGGGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGtcatc                                                                         >  1:34955/1‑140 (MQ=255)

                                                                cTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATg                                                                      <  2:2147015/140‑1 (MQ=255)

                                                                   cGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATgcgc                                                                   >  2:2287078/1‑140 (MQ=255)

                                                                   cGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATgcgc                                                                   >  1:2411612/1‑140 (MQ=255)

                                                                          aaTACGCTCCAGTTCCTGGCTTGCACCGCTAGGTCGGCGTAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAgcg                                                            <  2:1086441/140‑1 (MQ=255)

                                                                                cTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTg                                                       >  1:1864420/1‑139 (MQ=255)

                                                                                cTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTg                                                       <  2:1864420/139‑1 (MQ=255)

                                                                                cTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGa                                                      >  1:2420938/1‑140 (MQ=255)

                                                                                cTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGAGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTAATCATGCGCTCCAGCGCGGTGa                                                      >  1:1135130/1‑140 (MQ=255)

                                                                                 tCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGAc                                                     <  2:21950/140‑1 (MQ=255)

                                                                                    aggtCCTTGCTTTCACCGGTTCGGCGGCCCAGTAACGCCGTACCCAGTTGCCGGGGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCCGTCCAGCGGGGTGACCAt                                                  <  2:1619551/137‑1 (MQ=255)

                                                                                    aGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCAt                                                  <  2:2440657/140‑1 (MQ=255)

                                                                                    aGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCAt                                                  <  2:527905/140‑1 (MQ=255)

                                                                                    aGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCAt                                                  <  1:443787/140‑1 (MQ=255)

                                                                                    aGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCAt                                                  <  2:199523/140‑1 (MQ=255)

                                                                                    aGTTCCTTGCTTTCACCCCTACTACGGCGCAGTAATGCCCTACCCAGTAGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCAt                                                  <  2:924816/140‑1 (MQ=255)

                                                                                         cTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGt                                             <  2:1085428/140‑1 (MQ=255)

                                                                                         cTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGt                                             <  2:199665/140‑1 (MQ=255)

                                                                                             cTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGTTaaa                                         >  2:324630/1‑140 (MQ=255)

                                                                                                tCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGTTAAAACt                                      >  2:1458279/1‑140 (MQ=255)

                                                                                                tCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGACATCATGAGCTCCAGCGCGGTAACCATCTGGTTAAAACt                                      >  2:1026696/1‑140 (MQ=255)

                                                                                                       tACGACGGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGTTAAAACTGGCACCt                               >  1:2128116/1‑140 (MQ=255)

                                                                                                         cgacgGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGTTAAAACTGGCACCTGc                             >  1:534912/1‑140 (MQ=255)

                                                                                                           acgGCGCAGTAACGCTGTACCCAGTCGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGTTAAAACTGGCACCTGCgg                           <  1:1116622/140‑1 (MQ=255)

                                                                                                           acgGCGCAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGTTAAAACTGGCACCTGCgg                           <  1:389565/140‑1 (MQ=255)

                                                                                                               cgcAGTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGCGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGTTAAAACTGGCACCTGCGGCAAg                       >  1:2041799/1‑140 (MQ=255)

                                                                                                                   gTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGTTAAAACTGGCACCTGCGGCAAGGAAt                   <  2:2411612/140‑1 (MQ=255)

                                                                                                                   gTAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCCCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGTTAAAACTGGCACCTGCGGCAAGGAAt                   <  2:902220/140‑1 (MQ=255)

                                                                                                                    tAACGCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGTTAAAACTGGCACCTGCGGCAAGGAAtt                  >  1:1348802/1‑140 (MQ=255)

                                                                                                                        gCCGTACCCAGTTGCTGGCGCGTCATCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGTTAAAACTGGCACCTGCGGCAAGGAATTCCtg              <  1:1026696/140‑1 (MQ=255)

                                                                                                                        gCCGTACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGTTAAAACTGGCACCTGCGGCAAGGAATTCCtg              <  1:1458279/140‑1 (MQ=255)

                                                                                                                            tACCCAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGTTAAAACTGGCACCTGCGGCAAGGAATTCCTGTGGc          >  1:595053/1‑140 (MQ=255)

                                                                                                                              cccAGTTGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGTTAAAACTGGCACCTGCGGCAAGGAATTCCTGTGGccc        <  1:1367290/140‑1 (MQ=255)

                                                                                                                              cccAGTTGCAGGCGCGTCAGCGCGGTGCGCAACTCCTGAAAGATATCACAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGTTAAAACTGGCACCTGCGGCAAGGAATTCCTGTGGccc        <  2:645568/140‑1 (MQ=255)

                                                                                                                               ccAGTTGCAGGCGCGCCAGCGGCGTCCGCGGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGTTAAAACTGGCACCTGCGGCAAGGAATTCCTGTGGcccc       <  1:752870/140‑1 (MQ=255)

                                                                                                                                    tGCAGGCGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCACCTGGTTAAAACTGGCACCTGCGGCAGGGAATTCCTGTGGCCCCGCTTc  >  2:1044093/1‑140 (MQ=255)

GCGTTTTTTTGCTGATTACGTGACATCACCAACAGATCGTTGATCATGCTGTCCAGACGTTGCGCTTCGGTTTCAATACGCTCCAGTTCCTTGCTTTCACCGCTACGACGGCGCAGTAACGCCGTACCCAGTTGCAGACGCGTCAGCGGGGTGCGCAGCTCGTGAGAGATATCAGAAAGCAGACGCTGCTGAGAGGTCATCATGCGCTCCAGCGCGGTGACCATCTGGTTAAAACTGGCACCTGCGGCAAGGAATTCCTGTGGCCCCGCTTC  >  NC_000913/4104071‑4104342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`