BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,347,071	A→G	G614G (GGT→GGC)	rnb ←	RNase II

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,347,071	0	A	G	99.2%	457.7 / NA	129	G614G (GGT→GGC)	rnb	RNase II
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (69/59); minor base T (1/0); total (70/59)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 129 total aligned reads displayed.

GAAATAAACGGCCCATCCATGAGGAATGGGCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGA  >  NC_000913/1346935‑1347207

gAAATAAATGGCCCATTGATGAAGAATGGGGAGTGTAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCt                                                                                                                                       <  2:1141491/140‑1 (MQ=255)

gAAATAAACGGCCCATCGATGAGGAATGGGCGGTGGAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCt                                                                                                                                       <  2:1166345/140‑1 (MQ=255)

gAAATAAACGGCCCATCCATGAGGAATGGGCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCt                                                                                                                                       <  1:1776918/140‑1 (MQ=255)

gAAATAAACGGCCCATCCATGAGGAATGGGCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCt                                                                                                                                       >  2:2424046/1‑140 (MQ=255)

gAAATAAACGGCCCATCCATGAGGAATGGGCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCt                                                                                                                                       <  1:2370455/140‑1 (MQ=255)

gAAATAAACGGCCCATCCATGAGGAATGGGCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCt                                                                                                                                       <  1:336428/140‑1 (MQ=255)

gAAATAAACGGCCCATCAATGAAGAATGGGCAGTGAAAGTAGATTACGAGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCt                                                                                                                                       <  2:963624/140‑1 (MQ=255)

gAAATAAACGGCCCACCCATGAGGACTGGCCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCt                                                                                                                                       <  1:949136/140‑1 (MQ=255)

 aaaTAAACGGCCCATCCATGAGGAATGGGCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCtt                                                                                                                                      >  1:1841986/1‑140 (MQ=255)

  aaTAAACGGCCCATCCATGAGGAATGGGCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCttt                                                                                                                                     <  1:195083/140‑1 (MQ=255)

           cccATCCATGAGGAATGGGCCGTGAAAGGAGATTACGCGACCGTGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTAc                                                                                                                            >  1:1557308/1‑140 (MQ=255)

              atccatGAGGAATGGGCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGt                                                                                                                         <  2:146605/140‑1 (MQ=255)

               tccatGAGGAATGGGCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTg                                                                                                                        >  1:466934/1‑140 (MQ=255)

               tccatGAGGAATGGGCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTg                                                                                                                        >  1:243048/1‑140 (MQ=255)

                    gAGGAATGGGCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGtt                                                                                                                   >  1:1424123/1‑140 (MQ=255)

                     aGGAATGGGCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGttt                                                                                                                  >  1:1872487/1‑140 (MQ=255)

                        aaTGGGCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTcc                                                                                                               >  2:2120560/1‑140 (MQ=255)

                         aTGGGCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCTTTTAATTTGTACAGTGCCGTTTTCCt                                                                                                              >  2:1798332/1‑140 (MQ=255)

                          tGGGCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCTCCTTTAGTTTGTACAGTGCCGTTTTCCTg                                                                                                             >  1:976791/1‑140 (MQ=255)

                          tGGGCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTg                                                                                                             >  2:356030/1‑140 (MQ=255)

                          tGGGCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTg                                                                                                             >  1:562141/1‑140 (MQ=255)

                          tGGGCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTg                                                                                                             >  1:2406428/1‑140 (MQ=255)

                           gggCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGACGTTTTCCTgg                                                                                                            >  2:109085/1‑140 (MQ=255)

                           gggCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAACAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTgg                                                                                                            >  1:1470754/1‑140 (MQ=255)

                              ccGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTg                                                                                                         <  1:356030/140‑1 (MQ=255)

                               cGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGc                                                                                                        >  1:1325934/1‑140 (MQ=255)

                               cGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTATCGCCTTAAATTTGAACAGTGACGTTTTCCTGGCTGc                                                                                                        >  1:694308/1‑140 (MQ=255)

                                 tGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCaa                                                                                                      >  2:1391133/1‑140 (MQ=255)

                                     aGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCa                                                                                                  <  1:2048648/140‑1 (MQ=255)

                                      ggAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAg                                                                                                 >  1:1384730/1‑140 (MQ=255)

                                            tACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTGGCCTTTAAGTTGGACAGTGCCGTTTGCCTGGCTGCAAACCAGTTCATc                                                                                           >  2:632762/1‑140 (MQ=255)

                                               gcgACCGGGCGCGCACTAATGCAGCAGGTTTCCATGCCGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATcgcg                                                                                        <  1:1056416/140‑1 (MQ=255)

                                               gcgACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCTTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATcgcg                                                                                        <  1:1798332/140‑1 (MQ=255)

                                               gcgACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATcgcg                                                                                        <  2:562141/140‑1 (MQ=255)

                                                 gACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGca                                                                                      <  1:2424046/140‑1 (MQ=255)

                                                 gACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGca                                                                                      <  2:2042311/140‑1 (MQ=255)

                                                 gACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGca                                                                                      <  2:341080/140‑1 (MQ=255)

                                                 gACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGca                                                                                      <  2:490428/140‑1 (MQ=255)

                                                  aCCGGGCGCGCAATAATGCTGCTGGCTTCCATGCGGATTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGcac                                                                                     <  1:860514/140‑1 (MQ=255)

                                                  aCCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGcac                                                                                     <  1:557207/140‑1 (MQ=255)

                                                  aCCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGcac                                                                                     >  2:1971498/1‑140 (MQ=255)

                                                  aCCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGca                                                                                      <  2:167872/139‑1 (MQ=255)

                                                  aCCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGca                                                                                      >  1:167872/1‑139 (MQ=255)

                                                   ccGGGCGCGCAATAATGTTGCGGGTTTCCATACGGGCTTCGGCAATAGCGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGcaca                                                                                    <  2:785816/140‑1 (MQ=255)

                                                   ccGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGcaca                                                                                    <  1:133109/140‑1 (MQ=255)

                                                   ccGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGcaca                                                                                    <  2:1424123/140‑1 (MQ=255)

                                                   ccGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGcaca                                                                                    <  1:1230662/140‑1 (MQ=255)

                                                   ccGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGcaca                                                                                    <  1:1279487/140‑1 (MQ=255)

                                                      ggCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCg                                                                                 >  2:1638163/1‑140 (MQ=255)

                                                      ggCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCg                                                                                 <  1:2374827/140‑1 (MQ=255)

                                                      ggCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCCTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCg                                                                                 <  2:1434888/140‑1 (MQ=255)

                                                          cgcAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTa                                                                             <  2:1325934/140‑1 (MQ=255)

                                                               taatGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTTAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGaaa                                                                        <  1:1221125/140‑1 (MQ=255)

                                                                   gctgcGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTg                                                                    >  1:1822499/1‑140 (MQ=255)

                                                                    ctgcGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGc                                                                   <  2:1384730/140‑1 (MQ=255)

                                                                     tgcGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTCTCCTGGCTCCAATCCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGcc                                                                  >  2:950113/1‑140 (MQ=255)

                                                                       cgtgTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCgg                                                                >  1:2328619/4‑140 (MQ=255)

                                                                       cGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCgg                                                                >  2:606779/1‑140 (MQ=255)

                                                                       cGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCgg                                                                >  2:2390161/1‑140 (MQ=255)

                                                                        ggttttCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGa                                                               <  2:1872487/137‑1 (MQ=255)

                                                                         ggTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGa                                                               <  1:2137152/139‑1 (MQ=255)

                                                                         ggTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGa                                                               >  2:2137152/1‑139 (MQ=255)

                                                                           tttCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATa                                                            <  1:601731/140‑1 (MQ=255)

                                                                             tCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTCCATCGCGAACATCGAGTAAGACAGGTGCCGGAATaaa                                                          >  1:1095508/1‑140 (MQ=255)

                                                                                   cGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGAt                                                    >  2:2296462/1‑140 (MQ=255)

                                                                                   cGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGAt                                                    >  2:1481245/1‑140 (MQ=255)

                                                                                    ggACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTACGATAGGTGCTGGAATAAAGGCGATa                                                   >  1:1081350/1‑140 (MQ=255)

                                                                                    ggACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATa                                                   <  1:606779/140‑1 (MQ=255)

                                                                                     gACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGAACAGCGTGTAATAATGGTGCCAGAATAAAGGCGATAg                                                  >  1:1146396/1‑140 (MQ=255)

                                                                                       cTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAgcg                                                <  2:1598983/140‑1 (MQ=255)

                                                                                        ttCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAgcgc                                               >  2:1415782/1‑140 (MQ=255)

                                                                                         tCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAAGGTCCGGAATAAAGGCGATAGCGcc                                              >  1:854637/1‑140 (MQ=255)

                                                                                             cAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTa                                          <  1:1229816/140‑1 (MQ=255)

                                                                                             cAATAGTGACGTCAACAACGTCCGTTACTGTGTAAACAGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTa                                          <  1:693230/140‑1 (MQ=255)

                                                                                                tAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGAGCCGGAATAAAGGCGATAGCGCCGTTATCa                                       >  2:33940/1‑140 (MQ=255)

                                                                                                  gTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAAc                                     <  2:2318573/140‑1 (MQ=255)

                                                                                                    gACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCa                                   <  1:1971498/140‑1 (MQ=255)

                                                                                                      cGTCAATAACGTCAGCCACTTTCTACACCATTTCGCCGTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCaaa                                 <  1:632762/140‑1 (MQ=255)

                                                                                                          aaTAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGaa                             >  2:1739663/1‑140 (MQ=255)

                                                                                                          aaTAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGaa                             >  1:1235557/1‑140 (MQ=255)

                                                                                                           aTAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAac                            >  1:1439148/1‑140 (MQ=255)

                                                                                                           aTAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAac                            >  2:6445/1‑140 (MQ=255)

                                                                                                           aTAACGTCAGTCACTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAACGCCGTGATCAACCAAACGAac                            >  1:643888/1‑140 (MQ=255)

                                                                                                                 tcagtcaCTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACg                               <  1:1932884/131‑1 (MQ=255)

                                                                                                                   agtcaCTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTTCCGGAATAAAGGCGGTTACGCCGTTGTCAAAGAAACGAACACGCATgc                    >  2:1215600/1‑140 (MQ=255)

                                                                                                                   agtcaCTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATgc                    >  1:623097/1‑140 (MQ=255)

                                                                                                                   agtcaCTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATgc                    >  2:1989101/1‑140 (MQ=255)

                                                                                                                   agtcaCTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATgc                    >  2:1899325/1‑140 (MQ=255)

                                                                                                                    gtcaCTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATgcc                   >  2:1870406/1‑140 (MQ=255)

                                                                                                                       aCTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATgccgcc                <  2:179921/140‑1 (MQ=255)

                                                                                                                       aCTTTGTAAACCGTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATgccgcc                <  2:623097/140‑1 (MQ=255)

                                                                                                                             tAAACCGTTTCGCCTTTAATTTTTACAGTCCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCt          <  1:982748/140‑1 (MQ=255)

                                                                                                                                   gTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCt          >  2:154237/1‑134 (MQ=255)

                                                                                                                                   gTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCt          <  1:154237/134‑1 (MQ=255)

                                                                                                                                   gTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATc    >  2:529242/1‑140 (MQ=255)

                                                                                                                                   gTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATc    >  2:1813408/1‑140 (MQ=255)

                                                                                                                                   gTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATc    >  1:1551950/1‑140 (MQ=255)

                                                                                                                                   gTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATc    >  2:2021890/1‑140 (MQ=255)

                                                                                                                                   gTTTCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGCAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATc    >  2:2129988/1‑140 (MQ=255)

                                                                                                                                     ttCGCCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGa  >  2:1240525/1‑140 (MQ=255)

GAAATAAACGGCCCATCCATGAGGAATGGGCCGTGAAAGGAGATTACGCGACCGGGCGCGCAATAATGCTGCGGGTTTCCATGCGGACTTCGGCAATAGTGACGTCAATAACGTCAGTCACTTTGTAAACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGA  >  NC_000913/1346935‑1347207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`