Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,412,277 G→A P320L (CCC→CTC)  intR ← Rac prophage; putative integrase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,412,2770GA100.0% 413.3 / NA 122P320L (CCC→CTC) intRRac prophage; putative integrase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (57/65);  total (57/65)

Only 100 of 123 total aligned reads displayed.

AGCCAGCAGGCAAAAGTATGCCGCGTATGGTACGGATTACGGCGGCGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGGGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCAGGCTGCAGTAGTGT  >  NC_000913/1412142‑1412413
                                                                                                                                       |                                                                                                                                        
agccagcAGGCAAAAATATGCCACGGATGTTACGGATTACGGCGGCGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCAt                                                                                                                                      <  1:1177581/140‑1 (MQ=255)
      cagGCAAAAGTATGCCGCGTATGGTACGGATTACGGCGGCGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAACGTTTTTGATTTGCGATACACAGCCTGAGCATGAAAAc                                                                                                                                >  1:714788/1‑140 (MQ=255)
           aaaaGTATGCCGCGTATGGTACGGATTACGGCGGCGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAAt                                                                                                                           <  2:203600/140‑1 (MQ=255)
            aaaGTATGCCGCGTATGCTACGTATTACGGCCGCGCATACCAGCACGTCTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATg                                                                                                                          <  2:784242/140‑1 (MQ=255)
                   gCCGCGTATGGTACGGATTACGGCGGCGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGtttt                                                                                                                   >  2:2469597/1‑140 (MQ=255)
                   gCCGCGTATGGTACGGATTACGGCGGCGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGGAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGtttt                                                                                                                   >  2:2476553/1‑140 (MQ=255)
                     cgcgTATGGTACGGATTACGGCGGCGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTg                                                                                                                 >  2:1762058/1‑140 (MQ=255)
                       cgTATGGTACGGATTACGGCGGCGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCt                                                                                                               >  1:1900424/1‑140 (MQ=255)
                       cgTATGGTACGGATTACGGCGGCGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGAATTAAAACAAAATGCAGTTTTTGCt                                                                                                               >  1:1070509/1‑140 (MQ=255)
                         tATGGTACGGATTACGGCGGCGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCttt                                                                                                             >  1:2257844/1‑140 (MQ=255)
                          aTGGTACGGATTACGGCGGCGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCtttt                                                                                                            >  2:150064/1‑140 (MQ=255)
                             gTACGGATTACGGCGGCGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCgg                                                                                                         <  2:1557372/140‑1 (MQ=255)
                               aCGGATTACGGCGGCGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGtt                                                                                                       <  1:1868316/140‑1 (MQ=255)
                               aCGGATTACGGCGGCGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGtt                                                                                                       <  1:1949633/140‑1 (MQ=255)
                                  gATTACGGCGGCGAATATCAGCCCGTTTTACAGCTCCATACCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTg                                                                                                    <  2:714788/140‑1 (MQ=255)
                                  gATTACGGCGGCGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTg                                                                                                    >  1:2004816/1‑140 (MQ=255)
                                   aTTACGGCGGCGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGc                                                                                                   >  1:325360/1‑140 (MQ=255)
                                     tACGGCGGCGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCg                                                                                                 >  1:1619294/1‑140 (MQ=255)
                                      aCGGCGGCGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGt                                                                                                >  1:434614/1‑140 (MQ=255)
                                       cggcggCGAATACCAGCACGTTCTACTGCTGCATTCCGCCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTa                                                                                               <  1:1045231/140‑1 (MQ=255)
                                        ggcggcGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTa                                                                                               <  1:521012/139‑1 (MQ=255)
                                        ggcggcGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTa                                                                                               >  2:521012/1‑139 (MQ=255)
                                        ggcggcGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTAc                                                                                              >  1:1519952/1‑140 (MQ=255)
                                             cgAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCg                                                                                         <  2:1360232/140‑1 (MQ=255)
                                             cgAATACCAGCACGTCTTACTGGTGCATTACACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCg                                                                                         <  1:1078696/140‑1 (MQ=255)
                                              gAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCga                                                                                        <  1:2290645/140‑1 (MQ=255)
                                               aaTACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCTTGAAAACATAATACAGTTTTTGCTTGTCGGGTCTGCCGTACTCCCgat                                                                                       >  2:717502/1‑140 (MQ=255)
                                                 tACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTa                                                                                               >  1:1256690/1‑130 (MQ=255)
                                                 tACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTa                                                                                               <  2:1256690/130‑1 (MQ=255)
                                                     aGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATaaa                                                                                 <  1:450685/140‑1 (MQ=255)
                                                       cACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAg                                                                               <  1:1677829/140‑1 (MQ=255)
                                                                     gcATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTATTCCCGATGATAAAAGGTGATTTCGCtttt                                                                 >  1:957963/1‑140 (MQ=255)
                                                                     gcATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGATCTTCCGAACTCCCGATGATAAAAGGTGATTTCGCtttt                                                                 >  2:696786/1‑140 (MQ=255)
                                                                      cATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTg                                                                >  2:270962/1‑140 (MQ=255)
                                                                          ccACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCgat                                                            <  2:2404902/140‑1 (MQ=255)
                                                                           cACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCgatg                                                           >  2:108549/1‑140 (MQ=255)
                                                                               ttGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGc                                                       <  2:2257844/140‑1 (MQ=255)
                                                                                tGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGcc                                                      <  2:581983/140‑1 (MQ=255)
                                                                                tGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGcc                                                      >  1:603739/1‑140 (MQ=255)
                                                                                 gCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGccc                                                     <  1:150064/140‑1 (MQ=255)
                                                                                 gCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGccc                                                     >  1:2461321/1‑140 (MQ=255)
                                                                                 gCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATAATGccc                                                     >  1:2108601/1‑140 (MQ=255)
                                                                                  cccccAAACTTCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCg                                                    >  2:1384385/1‑140 (MQ=255)
                                                                                  cccccAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCg                                                    >  2:2344102/1‑140 (MQ=255)
                                                                                   ccccAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCgg                                                   >  2:2130462/1‑140 (MQ=255)
                                                                                   ccccAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCgg                                                   <  2:1600354/140‑1 (MQ=255)
                                                                                   ccccAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCgg                                                   <  1:2188958/140‑1 (MQ=255)
                                                                                   ccccAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCgg                                                   <  1:2227697/140‑1 (MQ=255)
                                                                                    cccAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGt                                                  <  2:362142/140‑1 (MQ=255)
                                                                                    cccAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGt                                                  <  1:2469597/140‑1 (MQ=255)
                                                                                    cccAAACTGCTTACCAAGTAATTAGGTTTGTGTTTTCTGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGt                                                  <  1:947289/140‑1 (MQ=255)
                                                                                     ccAAACTTCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTc                                                 <  1:1384385/140‑1 (MQ=255)
                                                                                     ccAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTc                                                 <  2:2167623/140‑1 (MQ=255)
                                                                                      cAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCa                                                <  2:2414078/140‑1 (MQ=255)
                                                                                        aaCTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGt                                              <  2:2094831/140‑1 (MQ=255)
                                                                                         aCTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGtt                                             <  2:603739/140‑1 (MQ=255)
                                                                                            gCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGt                                          >  1:171304/1‑140 (MQ=255)
                                                                                            gCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGt                                          >  1:2424337/1‑140 (MQ=255)
                                                                                            gCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCAGATGATAACAGGAGATCTCGCTTTTACGATCATGCCCGGTCAGTTTGt                                          >  2:947289/1‑140 (MQ=255)
                                                                                             cTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTa                                         >  1:565734/1‑140 (MQ=255)
                                                                                             cTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTa                                         >  1:533116/1‑140 (MQ=255)
                                                                                              ttACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTAt                                        <  2:1900424/140‑1 (MQ=255)
                                                                                               tACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTAt                                        <  2:422746/139‑1 (MQ=255)
                                                                                               tACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTAt                                        >  1:422746/1‑139 (MQ=255)
                                                                                                aCCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTg                                      <  2:1619294/140‑1 (MQ=255)
                                                                                                aCCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGCGATGTCGGTTTTGCGAGGATGACCGGTCAGTTTGTATTg                                      >  2:780511/1‑140 (MQ=255)
                                                                                                 ccGAGTAATAAGGTTTTTGTTTTCCCTTATACACCCTTAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGc                                     <  1:731404/140‑1 (MQ=255)
                                                                                                       aataaGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATCCCAGGTCAGTTTGTATTGCTCCTTc                               >  1:899817/1‑140 (MQ=255)
                                                                                                          aaGGTTTTTGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGt                            <  2:565734/140‑1 (MQ=255)
                                                                                                               ttttGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTc                       >  2:262739/1‑140 (MQ=255)
                                                                                                                tttGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCa                      >  2:546397/1‑140 (MQ=255)
                                                                                                                tttGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCa                      >  2:1790622/1‑140 (MQ=255)
                                                                                                                tttGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCa                      >  1:1365880/1‑140 (MQ=255)
                                                                                                                tttGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATAATGCCCGTTCAATTTGTATTGATCCTTCAGTGCTTCa                      >  1:1095387/1‑140 (MQ=255)
                                                                                                                tttGTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCCCTTTTGCGATGAGGCCCGGTCAGTTGGTATTGCTCCTTCAGTGCTTCa                      >  2:752614/1‑140 (MQ=255)
                                                                                                                   gTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCa                              >  2:403923/1‑129 (MQ=255)
                                                                                                                   gTTTTCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCa                              <  1:403923/129‑1 (MQ=255)
                                                                                                                    ttttCCGTTACACACCCTGAGCATGAAAACAAATTTCAGTTTTTGCTTGTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAagag                  <  2:1095387/140‑1 (MQ=255)
                                                                                                                    ttttCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAagag                  <  1:326963/140‑1 (MQ=255)
                                                                                                                    ttttCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAagag                  <  1:175392/140‑1 (MQ=255)
                                                                                                                    ttttCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAagag                  <  2:412669/140‑1 (MQ=255)
                                                                                                                      ttCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCa                <  2:2004816/140‑1 (MQ=255)
                                                                                                                      ttCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCa                <  2:171304/140‑1 (MQ=255)
                                                                                                                      ttCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTGTTGCTTTTGGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCa                <  2:1070509/140‑1 (MQ=255)
                                                                                                                       tCCGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGATCCTTCCGTGCTTCAAGAGCAg               >  1:883658/1‑140 (MQ=255)
                                                                                                                        ccGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCAgg              <  2:1442738/140‑1 (MQ=255)
                                                                                                                        ccGTTACACACCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCAgg              <  1:1255981/140‑1 (MQ=255)
                                                                                                                            tACACACCCTGAGCATGAAAACCAAATGCAGCTTTTGCTCTTCGGTTCAGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCAGGCTGc          <  2:673709/140‑1 (MQ=255)
                                                                                                                            tACACACCCTGAGCATGAAAACAAAATGCAGTTTTGGCTGTTCGGTTCGGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCAGGCTGc          <  2:883658/140‑1 (MQ=255)
                                                                                                                              cacacCCTGAGCATGCAAACAATATCCAGCTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCAGGCTGCag        <  1:717502/140‑1 (MQ=255)
                                                                                                                              cacacCCTGAGCATGAAGACAATATGCAGTTATTGTTTTTCGGTTCTGTCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCAGGCTGCag        <  2:899817/140‑1 (MQ=255)
                                                                                                                              cacacCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCAGGCTGCag        <  2:954812/140‑1 (MQ=255)
                                                                                                                              cacacCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCAGGCTGCag        >  2:298144/1‑140 (MQ=255)
                                                                                                                              cacacCCTGAGCATGAAAACAAAATGCAGTTATTGTTTTGCGGTTCTGTCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCAGGCTGCag        <  2:808033/140‑1 (MQ=255)
                                                                                                                               acacCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCAGGCTGCagt       <  1:1860570/140‑1 (MQ=255)
                                                                                                                                cacCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCAGGCTGCagta      <  1:2053619/140‑1 (MQ=255)
                                                                                                                                cacCCTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCAGGCTGCagta      <  2:2424337/140‑1 (MQ=255)
                                                                                                                                   ccTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCAGGCTGCGGTAgtg   >  1:15116/1‑140 (MQ=255)
                                                                                                                                   ccTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCAGGCTGCAGTAgtg   >  1:247570/1‑140 (MQ=255)
                                                                                                                                    cTGAGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCAGGCTGCAGTAgtgt  <  1:293296/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
AGCCAGCAGGCAAAAGTATGCCGCGTATGGTACGGATTACGGCGGCGAATACCAGCACGTTTTACTGCTGCATTCCACCTTGCCCCCAAACTGCTTACCGAGTAATAAGGTTTTTGTTTTCCGTTACACACCCTGGGCATGAAAACAAAATGCAGTTTTTGCTTTTCGGTTCTGCCGTACTCCCGATGATAAAAGGTGATTTCGCTTTTGCGATGATGCCCGGTCAGTTTGTATTGCTCCTTCAGTGCTTCAAGAGCAGGCTGCAGTAGTGT  >  NC_000913/1412142‑1412413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑