Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 731,984 | 2 bp→AC | coding (2402‑2403/4194 nt) | rhsC → | rhs element protein RhsC |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 731,984 | 0 | G | A | 88.9% | 12.9 / NA | 9 | W801Y (TGG→TAC) | rhsC | rhs element protein RhsC |
Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (6/2); total (7/2) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
* | NC_000913 | 731,985 | 0 | G | C | 100.0% | 16.4 / NA | 9 | W801Y (TGG→TAC) | rhsC | rhs element protein RhsC |
Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (7/2); total (7/2) |
CATCATCCGCAGACGAATGAACTGCTCTGGCAGCATGAGACCAGACATGCGTACAACGCACAGGGACTGGCGAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACCTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCT > NC_000913/731854‑732017 || catcatCCGCAGACGAATGAACTGCTCTGGCAGCATGAGACCAGACATGCGTACAACGCACAGGGACTGGCGAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACCTACGGCAGCGGTTACCTGGCAgg > 1:317276/1‑140 (MQ=255) atcatcCGCAGACGAATGAACTGCTCTGGCAGCATGAGACCAGACATGCGTACAACGCACAGGGACTGGCGAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACCTACGGCAGCGGTTACCTGGCAGGc > 2:2045551/1‑140 (MQ=255) atcatcCGCAGACGAATGAACTGCTCTGGCAGCATGAGACCAGACATGCGTACAACGCACAGGGACTGGCGAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACCTACGGCAGCGGTTACCTGGCAGGc > 2:2107161/1‑140 (MQ=255) tcCGCAGACGAATGAACTGCTCTGGCAGCATGAGACCAGACATGCGTACAACGCACAGGGACTGGCGAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACCTACGGCAGCGGTTACCTGGCAGGCATGa < 2:136442/140‑1 (MQ=11) cGCAGACGAATGAACTGCTCTGGCAGCATGAGACCAGACATGCGTACAACGCACAGGGACTGGCGAACCGCTGTATACCGGACAGCCTGCCGGCCGTGGAGTGGTTGAGCTACGGCAGCGGTGACCTGGCAGGCATGaaa > 2:638573/1‑140 (MQ=11) aGACGAATGAACTGCTCTGGCAGCATGAGACCAGACATGCGTACAACGCACAGGGACTGGCGAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACCTACGGCAGCGGTTACCTGGCAGGCATGAAACTc > 1:606246/1‑140 (MQ=255) aCGAATGAACTGCTCTGGCAGCATGAGACCAGACATGCGTACAACGCACAGGGACTGGCGAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGCCCTACGGCAGCGGTAACCTGGCAGGCATGAAACTCgg > 1:922234/1‑140 (MQ=11) aCGAATGAACTGCCCCGGCAGCATGAGACCAGACATGCGAACAACGCACAGGGACGGGCGAACCGCTGTATACCGGACAGCCGGCCCGCCGTGGAATGGCTGACCTACGGCAGCGGTTACCTGGCAGGCATGAAACTCgg < 2:430771/140‑1 (MQ=11) ctctGGCAGCATGAGACCAGACATGCGTACAACGCACAGGGACTGGCGAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACCTACGGCAACGGCTGCTTGGCAGGCCTGAAACTCGGCGACACACCGCt > 2:1120573/1‑140 (MQ=11) || CATCATCCGCAGACGAATGAACTGCTCTGGCAGCATGAGACCAGACATGCGTACAACGCACAGGGACTGGCGAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACCTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCT > NC_000913/731854‑732017 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |