BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,074,362	(C)_6→5	coding (2824/3120 nt)	flu →	CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,074,357	0	C	.	100.0%	433.3 / NA	103	coding (2819/3120 nt)	flu	CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (45/58); total (45/58)

Only 100 of 126 total aligned reads displayed.

CAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATATGCGTGTGGGGACTTCCACTGCAGGCAGCGGG  >  NC_000913/2074218‑2074487

cAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGc                                                                                                                                    <  1:294895/140‑1 (MQ=255)

 aGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcc                                                                                                                                   >  1:397298/1‑140 (MQ=255)

 aGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcc                                                                                                                                   <  2:793581/140‑1 (MQ=255)

 aGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcc                                                                                                                                   <  1:389893/140‑1 (MQ=255)

 aGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcc                                                                                                                                   >  1:331242/1‑140 (MQ=255)

 aGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcc                                                                                                                                   >  1:1226692/1‑140 (MQ=255)

 aGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcc                                                                                                                                   <  2:380410/140‑1 (MQ=255)

 aGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcc                                                                                                                                   <  2:791683/140‑1 (MQ=255)

 aGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcc                                                                                                                                   <  2:1635407/140‑1 (MQ=255)

   ggACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcccc                                                                                                                                 <  2:965048/140‑1 (MQ=255)

   ggACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcccc                                                                                                                                 >  2:727194/1‑140 (MQ=255)

   ggACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcccc                                                                                                                                 <  1:139562/140‑1 (MQ=255)

   ggACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcccc                                                                                                                                 >  2:873027/1‑140 (MQ=255)

     aCTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccccct                                                                                                                               >  1:1030682/1‑139 (MQ=255)

     aCTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccccct                                                                                                                               >  2:260200/1‑139 (MQ=255)

     aCTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccccct                                                                                                                               >  2:366634/1‑139 (MQ=255)

     aCTTTCCCTGGATGACGGTAAGAACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccccct                                                                                                                               >  2:578671/1‑139 (MQ=255)

         tCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGt                                                                                                                          >  1:186241/1‑140 (MQ=255)

           ccTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTGCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGa                                                                                                                        <  1:1518304/140‑1 (MQ=255)

             tGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACa                                                                                                                      <  1:987970/140‑1 (MQ=255)

              ggATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccccctgcg                                                                                                                            >  2:100993/1‑130 (MQ=255)

              ggATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccccctgcg                                                                                                                            <  1:100993/134‑5 (MQ=255)

                  gACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCa                                                                                                                 <  2:176946/140‑1 (MQ=255)

                   aCGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCaa                                                                                                                <  2:186241/140‑1 (MQ=255)

                   aCGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCaa                                                                                                                <  2:1619753/140‑1 (MQ=255)

                     ggTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCaaaa                                                                                                              <  2:838995/140‑1 (MQ=255)

                      gTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAac                                                                                                             <  2:1551971/140‑1 (MQ=255)

                       tAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAaca                                                                                                            <  1:721799/140‑1 (MQ=255)

                       tAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAaca                                                                                                            >  1:920882/1‑140 (MQ=255)

                       tAAGAACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAaca                                                                                                            <  1:578671/140‑1 (MQ=255)

                        aaGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAacac                                                                                                           <  2:689893/140‑1 (MQ=255)

                         aGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAAcaca                                                                                                          >  2:12399/1‑140 (MQ=255)

                         aGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAAcaca                                                                                                          <  1:169288/140‑1 (MQ=255)

                         aGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAAcaca                                                                                                          <  1:300736/140‑1 (MQ=255)

                         aGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAAcaca                                                                                                          <  1:366634/140‑1 (MQ=255)

                         aGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAAcaca                                                                                                          <  2:1204393/140‑1 (MQ=255)

                           gACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAgt                                                                                                        <  1:1577572/140‑1 (MQ=255)

                                cGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAgt                                                                                                        >  2:1513666/1‑135 (MQ=255)

                                cGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAgt                                                                                                        <  1:1513666/135‑1 (MQ=255)

                                cGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTgtgag                                                                                                   >  2:1082775/1‑140 (MQ=255)

                                     gTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAaca                                                                                                            <  1:1113064/126‑1 (MQ=255)

                                     gTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAaca                                                                                                            >  2:1113064/1‑126 (MQ=255)

                                     gTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAAt                                                                                              >  2:1602256/1‑140 (MQ=255)

                                     gTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCATG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAAt                                                                                              >  2:1470731/1‑140 (MQ=255)

                                       tATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTa                                                                                            <  2:1226692/140‑1 (MQ=255)

                                          gtgAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTgtgag                                                                                                   <  2:453392/130‑1 (MQ=255)

                                          gtgAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTgtgag                                                                                                   >  1:453392/1‑130 (MQ=255)

                                          gtgAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCg                                                                                         <  2:1546495/140‑1 (MQ=255)

                                          gtgAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCg                                                                                         >  2:1258353/1‑140 (MQ=255)

                                               gTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTg                                                                                      >  2:553660/1‑138 (MQ=255)

                                               gTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTg                                                                                      <  1:553660/138‑1 (MQ=255)

                                               gTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGaa                                                                                    <  1:1082775/140‑1 (MQ=255)

                                               gTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGaa                                                                                    >  1:1071299/1‑140 (MQ=255)

                                                  cGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtg                                                                                 <  1:815391/140‑1 (MQ=255)

                                                   gggCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCg                                                                                         >  2:26210/1‑131 (MQ=255)

                                                    ggCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtggt                                                                               >  2:362263/1‑140 (MQ=255)

                                                        tGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGt                                                                           <  1:727194/140‑1 (MQ=255)

                                                           cAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACa                                                                        <  2:1047122/140‑1 (MQ=255)

                                                           cAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACa                                                                        <  1:12399/140‑1 (MQ=255)

                                                              tGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGcc                                                                     <  1:243741/140‑1 (MQ=255)

                                                              tGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGcc                                                                     >  1:484227/1‑140 (MQ=255)

                                                                  caacaTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCt                                                                 <  1:1258353/140‑1 (MQ=255)

                                                                      aTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTa                                                             <  2:1030682/140‑1 (MQ=255)

                                                                        gtgcgtgcCGGTTTCCGTCTGGGCAGCCACAATGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATc                                                           >  2:269741/1‑140 (MQ=255)

                                                                        gtgcgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATc                                                           >  1:1163247/1‑140 (MQ=255)

                                                                        gtgcgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATc                                                           >  1:47691/1‑140 (MQ=255)

                                                                         tgcgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATcc                                                          <  1:260200/140‑1 (MQ=255)

                                                                          gcgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCg                                                         <  2:484227/140‑1 (MQ=255)

                                                                          gcgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCg                                                         <  1:1002202/140‑1 (MQ=255)

                                                                          gcgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCg                                                         >  1:151202/1‑140 (MQ=255)

                                                                          gcgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCg                                                         >  1:1461211/1‑140 (MQ=255)

                                                                          gcgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTAAACTGGTGGGTACAGCCTTCTGTTATCCg                                                         >  1:1316621/1‑140 (MQ=255)

                                                                           cgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGc                                                        >  1:853001/1‑140 (MQ=255)

                                                                           cgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGc                                                        >  2:972001/1‑140 (MQ=255)

                                                                            gtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCa                                                       >  1:1005946/1‑140 (MQ=255)

                                                                               ccGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGc                                                        <  2:209599/136‑1 (MQ=255)

                                                                               ccGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCGCCt                                                    >  1:1655463/1‑140 (MQ=255)

                                                                               ccGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCt                                                    >  2:118168/1‑140 (MQ=255)

                                                                               ccGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCt                                                    >  2:237265/1‑140 (MQ=255)

                                                                               ccGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCt                                                    >  2:896511/1‑140 (MQ=255)

                                                                                   tttCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAg                                                >  2:1530877/1‑140 (MQ=255)

                                                                                    ttCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGc                                               <  1:28880/140‑1 (MQ=255)

                                                                                        gTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTccc                                           <  2:1077761/140‑1 (MQ=255)

                                                                                          cTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCgg                                         <  2:562812/140‑1 (MQ=255)

                                                                                          cTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCgg                                         <  2:853001/140‑1 (MQ=255)

                                                                                          cTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCgg                                         <  1:873027/140‑1 (MQ=255)

                                                                                           tGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCggg                                        <  1:118083/140‑1 (MQ=255)

                                                                                            gggCAGCCACAATGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCgggg                                       <  1:269741/140‑1 (MQ=255)

                                                                                            gggCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCgggg                                       <  2:31558/140‑1 (MQ=255)

                                                                                                   cacaACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATATg                                <  2:1177749/140‑1 (MQ=255)

                                                                                                      aaCGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATATGCgt                             <  1:237265/140‑1 (MQ=255)

                                                                                                         gATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATATGCGtgtg                          <  2:47691/140‑1 (MQ=255)

                                                                                                            atGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATATGCGTGTgggg                       >  2:478761/1‑140 (MQ=255)

                                                                                                            atGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATATGCGTGTgggg                       >  1:1133037/1‑140 (MQ=255)

                                                                                                            atGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTAAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATATGCGTGTgggg                       <  2:1316621/140‑1 (MQ=255)

                                                                                                                ccTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATATGCGTGTGGGGACtt                   >  2:772121/1‑140 (MQ=255)

                                                                                                                ccTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATATGCGTGTGGGGACtt                   <  2:1461211/140‑1 (MQ=255)

                                                                                                                    tGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATATGCGTGTGGGGACTTCCAc               >  1:1622584/1‑140 (MQ=255)

                                                                                                                          aGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCGCCTTCAGCTCCCGGGGAGATATGCGTGTGGGGACTTCCACTgcagg         >  2:985300/1‑140 (MQ=255)

                                                                                                                                 tCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATATGCGTGTGGGGACTTCCACTGCAGGCAGCggg  <  2:1622584/140‑1 (MQ=255)

CAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATATGCGTGTGGGGACTTCCACTGCAGGCAGCGGG  >  NC_000913/2074218‑2074487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`