New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3653230	NA (NA)	122 (1.250)	78/274	0.1	98.4%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	= 3766089	2 (0.020)					coding (3907/4134 nt)	rhsA	rhs element protein RhsA

CTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGCG  >  NC_000913/3653099‑3653368                                                                                                                                      |                                                                                                                                           ctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGa                                                                                                                                    >  1:180517/1‑140 (MQ=31) ctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGa                                                                                                                                    <  1:1298768/140‑1 (MQ=31)  ttttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGac                                                                                                                                   <  2:828269/140‑1 (MQ=32)      cTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTa                                                                                                                               <  2:511845/140‑1 (MQ=35)       tGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTAt                                                                                                                              >  2:1085320/1‑140 (MQ=35)        ggTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTAtt                                                                                                                             >  2:597149/1‑140 (MQ=37)              aCGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTa                                                                                                                       >  2:1153324/1‑140 (MQ=255)              aCGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTa                                                                                                                       >  1:464082/1‑140 (MQ=255)              aCGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTa                                                                                                                       >  1:247259/1‑140 (MQ=255)               cGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTAc                                                                                                                      <  2:1538011/140‑1 (MQ=255)               cGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTCTTTAc                                                                                                                      <  1:1189938/140‑1 (MQ=255)                 gcgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACAt                                                                                                                    <  1:804568/140‑1 (MQ=255)                  cgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATa                                                                                                                   <  1:1153324/140‑1 (MQ=255)                  cgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATa                                                                                                                   <  1:833590/140‑1 (MQ=255)                    cTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATaaa                                                                                                                 <  1:597149/140‑1 (MQ=255)                    cTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATaaa                                                                                                                 <  1:1649479/140‑1 (MQ=255)                       aCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACa                                                                                                                     >  1:1195200/1‑133 (MQ=255)                       aCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACa                                                                                                                     <  2:1195200/133‑1 (MQ=255)                       aCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATa                                                                                                                   <  2:102153/135‑1 (MQ=255)                       aCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATa                                                                                                                   >  1:102153/1‑135 (MQ=255)                            tgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACAccc                                                                                                         <  2:247259/140‑1 (MQ=255)                            tgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACAccc                                                                                                         <  2:180517/140‑1 (MQ=255)                             gAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCt                                                                                                        <  2:464082/140‑1 (MQ=255)                              aaTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTa                                                                                                       <  1:507993/140‑1 (MQ=255)                               aTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTAc                                                                                                      >  1:22986/1‑140 (MQ=255)                               aTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTAc                                                                                                      >  2:573818/1‑140 (MQ=255)                                ttCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTAcc                                                                                                     >  1:486441/1‑140 (MQ=255)                                 tCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTAccc                                                                                                    <  2:912533/140‑1 (MQ=255)                                   aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTAccccc                                                                                                  <  2:759936/140‑1 (MQ=255)                                   aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTAccccc                                                                                                  <  2:22986/140‑1 (MQ=255)                                   aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTAccccc                                                                                                  >  1:1520515/1‑140 (MQ=255)                                     tGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTACATAAAGAACACCCTACCCCCaaa                                                                                               <  2:1659026/140‑1 (MQ=255)                                     tGTCGGCGAAGGCAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCaa                                                                                                >  1:1342848/1‑140 (MQ=255)                                      gTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCaaa                                                                                               <  1:573818/140‑1 (MQ=255)                                      gTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCaaa                                                                                               <  1:1283116/140‑1 (MQ=255)                                      gTCGGCGAAGGCAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCaaa                                                                                               <  2:1342848/140‑1 (MQ=255)                                        cGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCTCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCaaa                                                                                               <  1:130737/140‑1 (MQ=255)                                        cGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAAtt                                                                                             >  2:510890/1‑140 (MQ=255)                                          gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTCCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATtat                                                                                           >  2:535734/1‑140 (MQ=255)                                           cGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATtata                                                                                          <  2:1520515/140‑1 (MQ=255)                                               ggTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAAt                                                                                              <  1:1196612/132‑1 (MQ=255)                                               ggTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAAt                                                                                              >  2:1196612/1‑132 (MQ=255)                                                 tAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCaaa                                                                                               >  1:828443/1‑129 (MQ=255)                                                 tAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCaaa                                                                                               <  2:828443/129‑1 (MQ=255)                                                  aaGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGAt                                                                                   <  1:688098/140‑1 (MQ=255)                                                      tgatgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGAc                                                                               <  1:1085320/140‑1 (MQ=255)                                                          gaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGa                                                                                <  2:918776/135‑1 (MQ=255)                                                          gaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGa                                                                                >  1:918776/1‑135 (MQ=255)                                                               atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTg                                                                      >  2:282870/1‑140 (MQ=255)                                                                      aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGacaaaca                                                               >  2:1021039/1‑140 (MQ=255)                                                                       cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGacaaacaa                                                              >  1:593013/1‑140 (MQ=255)                                                                       cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGacaaacaa                                                              >  2:710171/1‑140 (MQ=255)                                                                           gTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCg                                                          >  1:1640190/1‑140 (MQ=255)                                                                            ttCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGa                                                         >  2:1425231/1‑140 (MQ=255)                                                                                 tGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTAGATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGtt                                                    >  2:1446136/1‑140 (MQ=255)                                                                                 tGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGtt                                                    >  2:736058/1‑140 (MQ=255)                                                                                    cTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAt                                                 >  1:1580402/1‑140 (MQ=255)                                                                                     tCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAtt                                                >  1:1553739/1‑140 (MQ=255)                                                                                          aTGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCaa                                           <  2:1640190/140‑1 (MQ=255)                                                                                          aTGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCaa                                           <  2:381276/140‑1 (MQ=255)                                                                                          aTGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCaa                                           <  1:710171/140‑1 (MQ=255)                                                                                                aaCATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACattat                                     <  1:1021039/140‑1 (MQ=255)                                                                                                 aCATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACattatt                                    >  2:561954/1‑140 (MQ=255)                                                                                                 aCATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACattatt                                    >  1:639353/1‑140 (MQ=255)                                                                                                       tctcATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATAAACCAt                              <  1:1446136/140‑1 (MQ=255)                                                                                                            ta‑‑tCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCaa                                           <  2:87275/122‑1 (MQ=255)                                                                                                            ta‑‑tCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCaa                                           >  1:87275/1‑122 (MQ=255)                                                                                                            ta‑‑tCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCAt                              <  1:726653/135‑1 (MQ=255)                                                                                                            ta‑‑tCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCAt                              >  2:726653/1‑135 (MQ=255)                                                                                                             a‑‑tCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAAc                                          <  2:122285/122‑1 (MQ=255)                                                                                                             a‑‑tCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAAc                                          >  1:122285/1‑122 (MQ=255)                                                                                                                tCAGGGACTTGTCCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGAc                       <  1:535734/140‑1 (MQ=255)                                                                                                                    ggACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAAcc                   >  2:1549766/1‑140 (MQ=255)                                                                                                                    ggACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAAcc                   >  1:190139/1‑140 (MQ=255)                                                                                                                    ggACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAAcc                   >  1:1027706/1‑140 (MQ=255)                                                                                                                       cTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCttt                >  1:721051/1‑140 (MQ=255)                                                                                                                         tGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTa              >  1:986355/1‑140 (MQ=255)                                                                                                                          gTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTAc             >  1:1578382/1‑140 (MQ=255)                                                                                                                           ttCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACg            >  1:1402236/1‑140 (MQ=255)                                                                                                                               cACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCa        >  2:939681/1‑140 (MQ=255)                                                                                                                                    tccttAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGc   <  1:1549766/140‑1 (MQ=255)                                                                                                                                     ccttAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAgag  >  2:1555112/1‑138 (MQ=255)                                                                                                                                     ccttAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGCg  >  2:82457/1‑140 (MQ=255)                                                                                                                                      |                                                                                                                                           CTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATA‑‑TCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGCG  >  NC_000913/3653099‑3653368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.