BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,735,698	G→A	R240R (CGG→CGA)	xylR →	DNA‑binding transcriptional dual regulator XylR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,735,698	0	G	A	100.0%	434.7 / NA	121	R240R (CGG→CGA)	xylR	DNA‑binding transcriptional dual regulator XylR
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (66/55); total (66/55)

Only 100 of 121 total aligned reads displayed.

CGGCATATTCTGCAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCTCAACAGATTATCGCTCGCTGACCGATCCC  >  NC_000913/3735564‑3735833

cgGCATATTCTGCAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAAt                                                                                                                                    <  2:911857/140‑1 (MQ=255)

             aaGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAggcg                                                                                                                       >  1:547071/1‑140 (MQ=255)

               gTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAggcggc                                                                                                                     >  1:1298393/1‑140 (MQ=255)

                 aTGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCaa                                                                                                                   >  1:435281/1‑140 (MQ=255)

                 aTGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCaa                                                                                                                   >  1:1008086/1‑140 (MQ=255)

                 aTGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCaa                                                                                                                   <  2:1008086/140‑1 (MQ=255)

                  tgtgAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCaaa                                                                                                                  >  1:393655/1‑140 (MQ=255)

                  tgtgAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCaaa                                                                                                                  >  2:586597/1‑140 (MQ=255)

                  tgtgAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCaaa                                                                                                                  >  2:837373/1‑140 (MQ=255)

                  tgtgAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCaaa                                                                                                                  >  2:1119473/1‑140 (MQ=255)

                    tgAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAAc                                                                                                                >  1:853494/1‑140 (MQ=255)

                      aaCATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTg                                                                                                              >  1:966712/1‑140 (MQ=255)

                        cATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAggcgg                                                                                                                      <  2:1354757/130‑1 (MQ=255)

                         aTCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTg                                                                                                           >  2:724961/1‑140 (MQ=255)

                         aTCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTg                                                                                                           >  1:1448363/1‑140 (MQ=255)

                          tCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCaa                                                                                                                   >  1:991853/1‑131 (MQ=255)

                          tCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGc                                                                                                          >  1:935879/1‑140 (MQ=255)

                           cTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCa                                                                                                         <  1:586597/140‑1 (MQ=255)

                           cTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCa                                                                                                         <  1:1567709/140‑1 (MQ=255)

                           cTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCa                                                                                                         <  2:935879/140‑1 (MQ=255)

                            tACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCAt                                                                                                        >  2:986005/1‑140 (MQ=255)

                            tACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCAt                                                                                                        <  1:991111/140‑1 (MQ=255)

                            tACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCAt                                                                                                        <  2:759029/140‑1 (MQ=255)

                             aCATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATc                                                                                                       <  2:71859/140‑1 (MQ=255)

                               atatTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGa                                                                                                     <  2:547071/140‑1 (MQ=255)

                                  ttCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGatta                                                                                                  <  2:1187243/140‑1 (MQ=255)

                                  ttCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGatta                                                                                                  >  1:53199/1‑140 (MQ=255)

                                  ttCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGatta                                                                                                  <  1:1374276/140‑1 (MQ=255)

                                  ttCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGatta                                                                                                  <  1:1589056/140‑1 (MQ=255)

                                   tCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGattat                                                                                                 >  1:39291/1‑140 (MQ=255)

                                     ccGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGattatt                                                                                                <  1:1234045/139‑1 (MQ=255)

                                     ccGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGAttatta                                                                                               <  1:914616/140‑1 (MQ=255)

                                       gTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGa                                                                                             <  2:39291/140‑1 (MQ=255)

                                        tACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGAt                                                                                            >  2:1080732/1‑140 (MQ=255)

                                        tACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGAt                                                                                            >  2:616422/1‑140 (MQ=255)

                                        tACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGAt                                                                                            >  1:140134/1‑140 (MQ=255)

                                          ctggAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATaa                                                                                          <  2:1542849/138‑1 (MQ=255)

                                          ccGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATaa                                                                                          <  1:9264/140‑1 (MQ=255)

                                          ccGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATaa                                                                                          <  2:1573258/140‑1 (MQ=255)

                                          ccGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATaa                                                                                          <  1:175146/140‑1 (MQ=255)

                                          ccGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATaa                                                                                          <  1:616422/140‑1 (MQ=255)

                                            ggAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCa                                                                                                         <  2:868285/123‑1 (MQ=255)

                                             gAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCa                                                                                                         >  2:474180/1‑122 (MQ=255)

                                             gAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCa                                                                                                         >  1:1473333/1‑122 (MQ=255)

                                             gAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCa                                                                                                         <  1:474180/122‑1 (MQ=255)

                                             gAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCa                                                                                                         <  2:1473333/122‑1 (MQ=255)

                                             gAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCAt                                                                                                        >  1:463402/1‑123 (MQ=255)

                                             gAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAaaga                                                                                       >  1:1382413/1‑140 (MQ=255)

                                             gAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAaaga                                                                                       >  1:1545107/1‑140 (MQ=255)

                                             gAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAaaga                                                                                       >  2:290246/1‑140 (MQ=255)

                                             gAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTCTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAaaga                                                                                       >  1:677431/1‑140 (MQ=255)

                                                  aTTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGaaa                                                                                  <  2:1545107/140‑1 (MQ=255)

                                                       gCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCg                                                                             >  2:293136/1‑140 (MQ=255)

                                                            aTTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACa                                                                        >  2:1054210/1‑140 (MQ=255)

                                                             ttGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAg                                                                       >  1:916843/1‑140 (MQ=255)

                                                                  aTCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAAt                                                                  >  1:1614808/1‑140 (MQ=255)

                                                                   tCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAAtt                                                                 <  1:1080732/140‑1 (MQ=255)

                                                                   tCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAAtt                                                                 <  1:290246/140‑1 (MQ=255)

                                                                       tAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTgg                                                             <  2:966712/140‑1 (MQ=255)

                                                                       tAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTgg                                                             <  1:293136/140‑1 (MQ=255)

                                                                          cGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTcc                                                          >  1:403825/1‑140 (MQ=255)

                                                                           gaagaaCTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTccc                                                         >  1:1365326/1‑140 (MQ=255)

                                                                           gaagaaCTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTccc                                                         >  1:377303/1‑140 (MQ=255)

                                                                             agaaCTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAAAAGAAATGCCGCTACAGCGAATTTTGGTCccac                                                       <  2:1298393/140‑1 (MQ=255)

                                                                               aaCTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCccacca                                                     >  2:22818/1‑140 (MQ=255)

                                                                                aCTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAg                                                    >  1:77925/1‑140 (MQ=255)

                                                                                 cTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGt                                                   <  1:724961/140‑1 (MQ=255)

                                                                                 cTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGt                                                   >  2:204839/1‑140 (MQ=255)

                                                                                    aCCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAAtttt                                                               >  1:824669/1‑125 (MQ=255)

                                                                                    aCCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTcg                                                <  2:1365326/140‑1 (MQ=255)

                                                                                    aCCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTcg                                                <  2:45967/140‑1 (MQ=255)

                                                                                      ccGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTcgcg                                              <  2:393655/140‑1 (MQ=255)

                                                                                      ccGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCT‑‑AGCGAATTTTGGTCCCACCAGTTCGCGTc                                            >  2:577714/1‑140 (MQ=255)

                                                                                         cTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCa                                           <  2:916843/140‑1 (MQ=255)

                                                                                              tGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTgga                                      <  1:1289011/140‑3 (MQ=255)

                                                                                              tGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGaa                                      <  2:1382413/140‑1 (MQ=255)

                                                                                              tGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGaa                                      >  1:1526045/1‑140 (MQ=255)

                                                                                              tGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGaa                                      <  1:986005/140‑1 (MQ=255)

                                                                                                 cgcgTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACgg                                   <  2:77925/140‑1 (MQ=255)

                                                                                                 cgcgTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACgg                                   <  2:403825/140‑1 (MQ=255)

                                                                                                   cgTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGgcg                                 >  1:681830/1‑140 (MQ=255)

                                                                                                    gtgtCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGgcg                                 >  2:202254/1‑139 (MQ=255)

                                                                                                     tgtCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCt                               <  1:1041002/140‑1 (MQ=255)

                                                                                                      gtCGCCCTTTCTTCGGTCACTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGgcg                                 >  2:705863/1‑137 (MQ=255)

                                                                                                      gtCGCCCTTTCTTCGGTCACTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGgcg                                 <  1:705863/137‑1 (MQ=255)

                                                                                                      gtCGCCCTTTCTTCGGTCACTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCTc                              >  1:463841/1‑140 (MQ=255)

                                                                                                       tCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCTCa                             >  1:1104424/1‑140 (MQ=255)

                                                                                                       tCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCTCa                             >  1:1401586/1‑140 (MQ=255)

                                                                                                                  tcGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCTCAACAGATTAtcg                  <  1:22818/140‑1 (MQ=255)

                                                                                                                   cGGTCGCTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCTCAACAGATTAtcgc                 <  1:204839/140‑1 (MQ=255)

                                                                                                                         cTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCTCAACAGATTAtcgctcg              >  1:133623/1‑137 (MQ=255)

                                                                                                                         cTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCTCAACAGATTAtcgctcg              <  2:133623/137‑1 (MQ=255)

                                                                                                                         cTCAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCTCAACAGATTATCGCTCGCTg           >  1:127791/1‑140 (MQ=255)

                                                                                                                           cAGGGCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCTCAACAGATTATCGCTCGCTGAc         <  2:1526045/140‑1 (MQ=255)

                                                                                                                              ggCGCGCGACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCTCAACAGATTATCGCTCGCTGACCGa      >  1:263510/1‑140 (MQ=255)

                                                                                                                                cgcgcgACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCTCAACAGATTATCGCTCGCTGACCGATc    >  2:966338/1‑140 (MQ=255)

                                                                                                                                  cgcgACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCTCAACAGATTATCGCTCGCTg           >  2:884520/1‑131 (MQ=255)

                                                                                                                                  cgcgACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCTCAACAGATTATCGCTCGCTg           <  1:884520/131‑1 (MQ=255)

                                                                                                                                  cgcgACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCTCAACAGATTATCGCTCGCTGACCGATccc  >  1:1106571/1‑140 (MQ=255)

                                                                                                                                  cgcgACAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCTCAACAGATTATCGCTCGCTGACCGATccc  >  1:184411/1‑140 (MQ=255)

CGGCATATTCTGCAAGTATGTGAACATCTACATATTCCCGTACCGGAAAAATTATGCGTGATTGGCATCGATAACGAAGAACTGACCCGCTATCTGTCGCGTGTCGCCCTTTCTTCGGTCGCTCAGGGCGCGCGGCAAATGGGCTATCAGGCGGCAAAACTGTTGCATCGATTATTAGATAAAGAAGAAATGCCGCTACAGCGAATTTTGGTCCCACCAGTTCGCGTCATTGAACGGCGCTCAACAGATTATCGCTCGCTGACCGATCCC  >  NC_000913/3735564‑3735833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`