Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,530,785	G→A	pseudogene (200/1054 nt)	yncI →	putative transposase YncI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,530,785	0	G	A	100.0%	315.5 / NA	89	pseudogene (200/1054 nt)	yncI	putative transposase YncI
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (36/53);  total (36/53)

GGTTAAACATAAATTATCTGCTATTTTGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGGCATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGTGAAATTATAGCAATAGATGGAAA  >  NC_000913/1530648‑1530917                                                                                                                                          |                                                                                                                                     ggTTAAACATAAATTATCTGCTATTTTGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACa                                                                                                                                    >  2:1426929/1‑140 (MQ=255) ggTTAAACATAAATTATCTGCTATTTTGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACa                                                                                                                                    <  1:138046/140‑1 (MQ=255)   ttAAACATAAATTATCTGCTATTTTGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACAtt                                                                                                                                  >  1:255605/1‑140 (MQ=255)    tAAACATAAATTATCTGCTATTTTGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTc                                                                                                                                 <  1:912986/140‑1 (MQ=255)      aaCATAAATTATCTGCTATTTTGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCg                                                                                                                               >  2:879659/1‑140 (MQ=255)        cATAAATTATCTGCTATTTTGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGt                                                                                                                             <  2:157253/140‑1 (MQ=255)         aTAAATTATCTGCTATTTTGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTc                                                                                                                            <  1:1169132/140‑1 (MQ=255)           aaaTTATCTGCTATTTTGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGa                                                                                                                          <  2:1063663/140‑1 (MQ=255)            aaTTATCTGCTATTTTGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGAt                                                                                                                         >  2:421676/1‑140 (MQ=255)                aTCTGCTATTTTGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGaca                                                                                                                     <  1:30865/140‑1 (MQ=255)                aTCTGCTACTTTGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGaca                                                                                                                     <  1:719778/140‑1 (MQ=255)                 tCTGCTATTTTGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGacac                                                                                                                    >  2:1580309/1‑140 (MQ=255)                        ttttGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCa                                                                                                             <  2:1016054/140‑1 (MQ=255)                        ttttGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCa                                                                                                             <  2:1428976/140‑1 (MQ=255)                          ttGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCAcg                                                                                                           <  2:886854/140‑1 (MQ=255)                            gTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCAcgcg                                                                                                         <  1:1580309/140‑1 (MQ=255)                              ttCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGtt                                                                                                       <  1:1303269/140‑1 (MQ=255)                                  cACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGa                                                                                                   <  1:1216326/140‑1 (MQ=255)                                  cACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGa                                                                                                   <  1:879659/140‑1 (MQ=255)                                   aCCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAg                                                                                                  <  2:255605/140‑1 (MQ=255)                                    ccGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGt                                                                                                 >  1:1266276/1‑140 (MQ=255)                                     cGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTa                                                                                                >  2:1143122/1‑140 (MQ=255)                                     cGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTa                                                                                                >  1:1203060/1‑140 (MQ=255)                                     cGTATGTGCAGTAATTGCAGGAGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGAGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTa                                                                                                >  2:1181041/1‑140 (MQ=255)                                       tATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAAc                                                                                              >  2:402470/1‑140 (MQ=255)                                            gCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGa                                                                                         <  1:1319665/140‑1 (MQ=255)                                                tAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGt                                                                                     >  2:253395/1‑140 (MQ=255)                                                  aTTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGttt                                                                                   >  2:856206/1‑140 (MQ=255)                                                  aTTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGttt                                                                                   <  2:991516/140‑1 (MQ=255)                                                  aTTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGttt                                                                                   >  1:1098142/1‑140 (MQ=255)                                                     gCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGc                                                                                >  1:1502001/1‑140 (MQ=255)                                                     gCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGc                                                                                >  2:1385566/1‑140 (MQ=255)                                                       aGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCt                                                                              <  1:402470/140‑1 (MQ=255)                                                        ggTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCtt                                                                             >  2:906974/1‑140 (MQ=255)                                                         gTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCttt                                                                            >  2:289434/1‑140 (MQ=255)                                                          tGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTg                                                                           >  2:726778/1‑140 (MQ=255)                                                          tGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTg                                                                           >  2:1597799/1‑140 (MQ=255)                                                          tGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTg                                                                           >  2:806787/1‑140 (MQ=255)                                                            ccGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGaa                                                                         <  2:1316813/140‑1 (MQ=255)                                                                 gAGTGGCAGGCAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGAt                                                                    <  1:1143122/140‑1 (MQ=255)                                                                  aGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATg                                                                   <  1:856206/140‑1 (MQ=255)                                                                      gCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTa                                                               >  1:317161/1‑140 (MQ=255)                                                                         ggAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTg                                                            >  2:51075/1‑140 (MQ=255)                                                                          gAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGa                                                           <  1:1597799/140‑1 (MQ=255)                                                                          gAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGa                                                           <  2:1257249/140‑1 (MQ=255)                                                                          gAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTCATTTTGATAATGACATTCCGGTCGATAACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGa                                                           <  1:1412786/140‑1 (MQ=255)                                                                           aaaTTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGaa                                                          <  1:728632/140‑1 (MQ=255)                                                                            aaTTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAAt                                                         <  1:806787/140‑1 (MQ=255)                                                                              ttGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCTGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGaaaa                                                                       <  1:1233934/124‑1 (MQ=255)                                                                              ttGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCTGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGaaaa                                                                       >  2:1233934/1‑124 (MQ=255)                                                                               tGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGa                                                      >  1:839061/1‑140 (MQ=255)                                                                                      tttGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGa                                               <  2:382157/140‑1 (MQ=255)                                                                                      tttGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGa                                               <  2:1266276/140‑1 (MQ=255)                                                                                          gACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGc                                           <  1:50525/140‑1 (MQ=255)                                                                                            cATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCa                                         <  1:846913/140‑1 (MQ=255)                                                                                             aTGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCAt                                        <  2:1520924/140‑1 (MQ=255)                                                                                              tGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCATGAGTGCCATg                                       <  1:913379/140‑1 (MQ=255)                                                                                              tGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATg                                       >  2:392220/1‑140 (MQ=255)                                                                                              tGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATg                                       >  1:435360/1‑140 (MQ=255)                                                                                              tGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATg                                       <  1:421676/140‑1 (MQ=255)                                                                                               gAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGa                                      >  1:1022480/1‑140 (MQ=255)                                                                                                aaaGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGa                                               <  2:113398/130‑1 (MQ=255)                                                                                                aaaGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGa                                               >  1:113398/1‑130 (MQ=255)                                                                                                    aCTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCa                                 <  1:51075/140‑1 (MQ=255)                                                                                                     cTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCAc                                <  2:338531/140‑1 (MQ=255)                                                                                                       tGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTg                              <  2:1502001/140‑1 (MQ=255)                                                                                                       tGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTg                              <  2:1022480/140‑1 (MQ=255)                                                                                                       tGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTg                              >  1:358604/1‑140 (MQ=255)                                                                                                       tGAATGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTg                              <  2:1203060/140‑1 (MQ=255)                                                                                                         aaTGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGAt                            >  1:644901/1‑140 (MQ=255)                                                                                                           tGGCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATgg                          >  2:892797/1‑140 (MQ=255)                                                                                                            ggCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGt                         <  1:253395/140‑1 (MQ=255)                                                                                                            ggCTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGt                         <  1:1385566/140‑1 (MQ=255)                                                                                                              cTAAAGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGTGa                       <  2:435360/140‑1 (MQ=255)                                                                                                                 aaGAAATATGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGTGAAAt                    <  2:346826/140‑1 (MQ=255)                                                                                                                         tGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGTGAAATTATAGCaa            <  1:1466561/140‑1 (MQ=255)                                                                                                                         tGGTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGTGAAATTATAGCaa            >  1:673862/1‑140 (MQ=255)                                                                                                                           gTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGTGAAATTATAGCAATa          >  2:1363333/1‑140 (MQ=255)                                                                                                                           gTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGTGAAATTATAGCAATa          >  1:1529072/1‑140 (MQ=255)                                                                                                                           gTGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGTGAAATTATAGCAATa          >  1:1551643/1‑140 (MQ=255)                                                                                                                            tGATTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGTGAAATTATAGCAATAg         <  1:906974/140‑1 (MQ=255)                                                                                                                              aTTTTGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGTGAAATTATAGCAATAGAt       >  2:654287/1‑140 (MQ=255)                                                                                                                                 ttGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGTGAAATTATAGCAATAGATGGa    <  2:358604/140‑1 (MQ=255)                                                                                                                                 ttGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGTGAAATTATAGCAATAGATGGa    <  2:1098142/140‑1 (MQ=255)                                                                                                                                 ttGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGTGAAATTATAGCAATAGATGGa    <  2:673862/140‑1 (MQ=255)                                                                                                                                 ttGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGTGAAATTATAGCAATAGATGGa    <  1:392220/140‑1 (MQ=255)                                                                                                                                 ttGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGTGAAATTATAGCAATAGATGGa    <  1:726778/140‑1 (MQ=255)                                                                                                                                 ttGATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGTGAAATTATAGCAATAGATGGa    <  2:1551643/140‑1 (MQ=255)                                                                                                                                   gATAATGACATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGTGAAATTATAGCAATAGATGGaaa  <  2:644901/140‑1 (MQ=255)                                                                                                                                          |                                                                                                                                     GGTTAAACATAAATTATCTGCTATTTTGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGGTGATTTTGATAATGGCATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATGTTTATTGAATGGATGCAGGAGTGCCATGAAATCACTGATGGTGAAATTATAGCAATAGATGGAAA  >  NC_000913/1530648‑1530917

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑