| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 383,598 | (A)7→8 | coding (338/1197 nt) | yaiP ← | putative glucosyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 383,591 | 1 | . | A | 96.3% | 181.2 / ‑0.8 | 54 | coding (345/1197 nt) | yaiP | putative glucosyltransferase |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base A (29/23); total (30/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCGGATGTGCGGTAACAGACCCGCGCCTTTCAACGCAGTAGAGGGAATGCCGCCTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTT‑A‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCATTTGCGTTTGACTTCCGCCATGACCGCTTCGGTA > NC_000913/383452‑383723 | cgcgGATGTGCGGTAACAGACCCGCGCCTTTCAACGCAGTAGAGGGAATGCCGCCTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACtt > 2:105702/1‑140 (MQ=255)cgcgGATGTGCGGTAACAGACCCGCGCCTTTCAACGCAGTAGAGGGAATGCCGCCTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACtt > 1:338812/1‑140 (MQ=255)cgcgGATGTGCGGTAACAGACCCGCGCCTTTCAACGCAGTAGAGGGAATGCCGCCTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACtt > 2:611819/1‑140 (MQ=255) gtgCGGTAACAGACCCGCGCCTTTCAACGCAGTAGAGGGAATGCCGCCTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTT‑a‑aaaaaa > 2:725008/1‑140 (MQ=255) aaCAGACCCGCGCCTTTCAACGCAGTAGAGGGAATGCCGCCTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGt < 2:231331/140‑1 (MQ=255) aGACCCGCGCCTTTCAACGCAGTAGAGGGAATGCCGCCTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGc < 2:338812/140‑1 (MQ=255) aGACCCGCGCCTTTCAACGCAGTAGAGGGAATGCCGCCTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTT‑A‑AAAAAACCTGGTCGCa < 1:127044/140‑1 (MQ=255) cccGCGCCTTTCAACGCAGTAGAGGGAATGCCGCCTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAgg < 1:495273/140‑1 (MQ=255) aaCGCAGTAGAGGGAATGCCGCCTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGa < 2:494927/140‑1 (MQ=255) aGTAGAGGGAATGCCGCCTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAGTTGAGGCCa < 2:39468/140‑1 (MQ=255) aGTAGAGGGAATGCCGCCTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCa > 2:274969/1‑140 (MQ=255) aGTAGAGGGAATGCCGCCTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCa > 1:506281/1‑140 (MQ=255) tAGAGGGAATGCCGCCTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGa > 2:210728/1‑133 (MQ=255) tAGAGGGAATGCCGCCTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGa < 1:210728/133‑1 (MQ=255) tAGAGGGAATGCCGCCTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCAtt > 1:354496/1‑140 (MQ=255) aTGCCGCCTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAg < 1:310128/138‑1 (MQ=255) aTGCCGCCTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAg > 2:310128/1‑138 (MQ=255) gccgccTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATtcat > 1:369471/1‑133 (MQ=255) gccgccTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATtcat < 2:369471/133‑1 (MQ=255) gccgccTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAgcgcc > 2:253576/1‑139 (MQ=255) gccgccTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGca > 1:349748/1‑140 (MQ=255) gccgccTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGca > 2:436505/1‑140 (MQ=255) gccgccTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGca < 1:120051/140‑1 (MQ=255) gccgccTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGca > 1:825448/1‑140 (MQ=255) ccgccTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGcac < 1:274969/140‑1 (MQ=255) cgccTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAgg > 2:740377/1‑123 (MQ=255) cgccTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAgg < 1:740377/123‑1 (MQ=255) cgccTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATtcat > 2:181966/1‑131 (MQ=255) cgccTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATtcat < 1:181966/131‑1 (MQ=255) cgccTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGcacc > 1:310648/1‑140 (MQ=255) gccTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGcacca > 1:300329/1‑140 (MQ=255) ggCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTa > 2:757948/1‑140 (MQ=255) gCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTAc < 1:651519/140‑1 (MQ=255) gCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTAc < 2:354496/140‑1 (MQ=255) gCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTAt < 1:361957/140‑1 (MQ=255) aTTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGa < 2:506281/140‑1 (MQ=255) atatAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGc < 2:825448/140‑1 (MQ=255) taGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGt < 1:658322/140‑1 (MQ=255) ccATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGcc < 1:611819/140‑1 (MQ=255) ttCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCa > 2:822891/1‑140 (MQ=255) tCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCAt > 2:80243/1‑140 (MQ=255) tCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCAt > 1:675153/1‑140 (MQ=255) tCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCAt > 2:70601/1‑140 (MQ=255) tCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCAt > 2:595742/1‑140 (MQ=255) tCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCAt > 2:850395/1‑140 (MQ=255) tCTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCATTTGc > 1:542532/1‑140 (MQ=255) cTTGATCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCATTTGCg > 2:31156/1‑140 (MQ=255) aTCGGGCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCATTTGCGTTTg > 1:838452/1‑140 (MQ=255) gCGGAACATAGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCATTTGCGTTTGACTTc > 2:438286/1‑140 (MQ=255) aGGTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCATTTGCGTTTGACTTCCGCCATGAc < 1:31156/140‑1 (MQ=255) ggTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCATTTGCGTTTGACTTCCGCCATGAcc > 1:559353/1‑140 (MQ=255) ggTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCATTTGCGTTTGACTTCCGCCATGAc < 1:295315/139‑1 (MQ=255) ggTGTCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCATTTGCGTTTGACTTCCGCCATGAc > 2:295315/1‑139 (MQ=255) gtCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCATTTGCGTTTGACTTCCGCCATGACCGCt < 2:838452/140‑1 (MQ=255) tCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCATTTGCGTTTGACTTCCGCCATGACCGCtt > 2:524404/1‑140 (MQ=255) tCGGCATCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCATTTGCGTTTGACTTCCGCCATGACCGCtt > 1:135028/1‑140 (MQ=255) tCGGCATCACTT‑ACAAAAAACCTGGTCGCAGGAGGCGGAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCATTTGCGTTTGACTTCCGCCATGACCGCtt > 2:300048/1‑140 (MQ=255) aTCACTTAA‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCATTTGCGTTTGACTTCCGCCATGACCGCTTCGGTa < 1:438286/140‑1 (MQ=255) | CGCGGATGTGCGGTAACAGACCCGCGCCTTTCAACGCAGTAGAGGGAATGCCGCCTACGGCATCGGCACCGCGCTCAATTTCTGCCAGCATATAGCCCATTCCGTCTTGATCGGGCGGAACATAGGTGTCGGCATCACTT‑A‑AAAAAACCTGGTCGCAGGTGGCGTAATTGAGGCCATTCATCAGCGCACCACCTTTACCGGTATTTTTTTGCGTGACGGCAACAAAGCGGTCGCCCCATTTGCGTTTGACTTCCGCCATGACCGCTTCGGTA > NC_000913/383452‑383723 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |