| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,059,436 | (G)6→7 | coding (181/2547 nt) | torA → | trimethylamine N‑oxide reductase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,059,430 | 1 | . | G | 96.8% | 101.7 / ‑3.0 | 31 | coding (175/2547 nt) | torA | trimethylamine N‑oxide reductase 1 |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (15/15); total (15/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 | |||||||||||
TTCTGGCACAACTCGGCGGCTTAACCGTCGCCGGGATGCTGGGGCCGTCATTGTTAACGCCGCGACGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACT‑GGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGAAAATGATTGCCGGATTGCCGGATCACGTACACAACGCGGCGCGTATTCGTTATC > NC_000913/1059296‑1059562 | ttCTGGCACAACTCGGCGGCTTAACCGTCGCCGGGATGCTGGGGCCGTCATTGTTAACGCCGCGACGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACT‑ggg‑gg > 1:711771/1‑140 (MQ=255) cacaACTCGGCGGCTTAACCGTCGCCGGGATGCTGGGGCCGTCATTGTTAACGCCGCGACGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACT‑ggg‑ggggctat < 1:700544/140‑6 (MQ=255) cTCGGCGGCTTAACCGTCGCCGGGATGCTGGGGCCGTCATTGTTAACGCCGCGACGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCcgcg > 1:494112/1‑140 (MQ=255) ggcggcTTAACCGTCGCCGGGATGCTGGGGCCGTCATTGTTAACGCCGCGACGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGa < 1:647856/140‑1 (MQ=255) gcggcTTAACCGTCGCCGGGATGCTGGGGCCGTCATTGTTAACGCCGCGACGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTTGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGAc < 2:290360/140‑1 (MQ=255) cggcTTAACCGTCGCCGGGATGCTGGGGCCGTCATTGTTAACGCCGCGACGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACg > 1:406165/1‑140 (MQ=255) gggATGCTGGGGCCGTCATTGTTAACGCCGCGACGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCt < 2:837400/140‑1 (MQ=255) tGGGGCCGTCATTGTTAACGCCGCGACGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTggc > 2:193220/1‑140 (MQ=255) gCCGTCATTGTTAACGCCGCGACGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCa > 2:570281/1‑140 (MQ=255) cATTGTTAACGCCGCGACGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAAcc > 2:364408/1‑140 (MQ=255) aCGCCGCGACGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACT‑GGGCGGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAAc < 2:733357/140‑1 (MQ=255) cgccgcGACGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACt > 2:589259/1‑140 (MQ=255) gcgACGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTATGGCGGCAAAACCGTTCGAACTGGAt > 1:606873/1‑140 (MQ=255) tGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAatat > 1:613763/1‑140 (MQ=255) cggcgCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGaa > 1:231670/1‑140 (MQ=255) cggcgCAAGCGGCGACTGACGCTGTC‑TCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGaaa > 2:734554/1‑140 (MQ=255) ggcgCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGaaa < 1:570281/140‑1 (MQ=255) gcgcAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGaaaa > 2:693821/1‑140 (MQ=255) aaGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGAAAATgat < 2:606873/140‑1 (MQ=255) gactgactCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGAAAATgattgccgga < 1:392282/140‑1 (MQ=255) gACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGAAAATgattgccgga > 2:625227/1‑140 (MQ=255) gACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCCTTCGAACTGGATAAATATCCGTCGAAAATgattgccgga < 2:797265/140‑1 (MQ=255) cTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGAAAATgattgccggatt < 1:427394/140‑1 (MQ=255) cGCTGTC‑TCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGAAAATGattgccggattgccgg < 1:734554/140‑1 (MQ=255) gCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGAAAATGattgccggattgccgg < 1:632846/140‑1 (MQ=255) gCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGAAAATGattgccggattgccgg < 2:494112/140‑1 (MQ=255) tGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGAACATGATtgccggattgccggat < 2:613763/140‑1 (MQ=255) gCATTCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGAAAATGATTGCCGGATTGCCGGATCACGTACACAACgcggc < 1:589259/140‑1 (MQ=255) ttCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGAAAATGATTGCCGGATTGCCGGATCACGTACACAACGCGGcgcg < 2:147070/140‑1 (MQ=255) tCTTACCGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGAAAATGATTGCCGGATTGCCGGATCACGTACACAACGTGGCGCGt > 1:232021/1‑140 (MQ=255) ccGGGTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGAAAATGATTGCCGGATTGCCGGATCACGTACACAACGCGGCGCGTATTCg < 1:193220/140‑1 (MQ=255) gggTCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGAAAATGATTGCCGGATTGCCGGATCACGTACACAACGCGGCGCGTATTCGtt > 1:95543/1‑140 (MQ=255) tCGCACTGGGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGAAAATGATTGCCGGATTGCCGGATCACGTACACAACGCGGCGCGTATTCGTTATc > 1:274264/1‑140 (MQ=255) | TTCTGGCACAACTCGGCGGCTTAACCGTCGCCGGGATGCTGGGGCCGTCATTGTTAACGCCGCGACGTGCGACTGCGGCGCAAGCGGCGACTGACGCTGTCATCTCGAAAGAGGGCATTCTTACCGGGTCGCACT‑GGG‑GGGCTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGAAAATGATTGCCGGATTGCCGGATCACGTACACAACGCGGCGCGTATTCGTTATC > NC_000913/1059296‑1059562 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |