Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,778,853	T→C	T1292A (ACA→GCA)	ypjA ←	adhesin‑like autotransporter YpjA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,778,853	0	T	C	100.0%	238.0 / NA	68	T1292A (ACA→GCA)	ypjA	adhesin‑like autotransporter YpjA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (33/35);  total (33/35)

AGCCGCCCAGAGAATAACTGCCCACACTGCCATGTCCTCCGCGATCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATAC  >  NC_000913/2778718‑2778984                                                                                                                                        |                                                                                                                                    aGCCGCCCAGAGAATAACTGCCCACACTGCCATGTCCTCCGCGATCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCAtt                                                                                                                                 >  1:500264/1‑140 (MQ=255)     gccCAGAGAATAACTGCCCACACTGCCATGTCCTCCGCGATCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCgg                                                                                                                             >  1:356803/1‑140 (MQ=255)             aaTAACTGCCCACACTGCCATGTCCTCCGCGATCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTc                                                                                                                     >  1:406762/1‑140 (MQ=255)                     cccACACTGCCATGTCCTCCGCGATCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCaaa                                                                                                             >  2:154161/1‑140 (MQ=255)                     cccACACTGCCATGTCCTCCGCGATCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCaaa                                                                                                             >  2:688169/1‑140 (MQ=255)                     cccACACTGCCATGTCCTCCGCGATCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCaaa                                                                                                             >  1:35589/1‑140 (MQ=255)                       cacaCTGCCATGTCCTCCGCGATCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAAcc                                                                                                           >  1:49864/1‑140 (MQ=255)                          acTGCCATGTCCTCCGCGATCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCgg                                                                                                        >  2:92401/1‑140 (MQ=255)                           cTGCCATGTCCTCCGCGATCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGc                                                                                                       <  2:49864/140‑1 (MQ=255)                                   tcctccGCGATCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCAt                                                                                               >  2:327044/1‑140 (MQ=255)                                   tcctccGCGATCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCAt                                                                                               <  2:522299/140‑1 (MQ=255)                                    cctccGCGATCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATc                                                                                              >  1:610763/1‑140 (MQ=255)                                      tccGCGATCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCgg                                                                                            >  2:348069/1‑140 (MQ=255)                                        cgcgATCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTACCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCggtg                                                                                          >  1:194665/1‑140 (MQ=255)                                          cgATCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCggtggt                                                                                        <  2:356803/140‑1 (MQ=255)                                            aTCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGa                                                                                      >  2:525635/1‑140 (MQ=255)                                             tCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCg                                                                                                  <  1:234640/127‑1 (MQ=255)                                             tCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCg                                                                                                  >  2:234640/1‑127 (MQ=255)                                                    cGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACAttatta                                                                              <  1:327044/140‑1 (MQ=255)                                                     gATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTACTTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTAc                                                                             <  2:805210/140‑1 (MQ=255)                                                      atatGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACg                                                                            <  1:525635/140‑1 (MQ=255)                                                      atatGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACg                                                                            >  1:620689/1‑140 (MQ=255)                                                       tatGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCggtggt                                                                                        >  2:62485/1‑127 (MQ=255)                                                       tatGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCggtggt                                                                                        <  1:62485/127‑1 (MQ=255)                                                       tatGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACgg                                                                           >  2:64461/1‑140 (MQ=255)                                                       tatGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACgg                                                                           >  1:41397/1‑140 (MQ=255)                                                       tatGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACgg                                                                           <  1:348069/140‑1 (MQ=255)                                                           tgAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGgtgt                                                                       >  2:469440/1‑140 (MQ=255)                                                                 ggAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACg                                                                 <  2:35589/140‑1 (MQ=255)                                                                 ggAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACg                                                                 >  1:193631/1‑140 (MQ=255)                                                                    aTAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCg                                                              <  1:154161/140‑1 (MQ=255)                                                                    aTAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCg                                                              <  1:723098/140‑1 (MQ=255)                                                                    aTAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCg                                                              <  2:610763/140‑1 (MQ=255)                                                                     tAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGc                                                             <  2:815062/140‑1 (MQ=255)                                                                        cccATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGcccc                                                          >  1:373136/1‑140 (MQ=255)                                                                           aTAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCa                                                       <  1:64461/140‑1 (MQ=255)                                                                            tAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAg                                                      >  2:454487/1‑140 (MQ=255)                                                                            tAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAg                                                      >  1:616289/1‑140 (MQ=255)                                                                             aaaaGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGa                                                     <  2:709820/140‑1 (MQ=255)                                                                             aaaaGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGa                                                     <  2:559177/140‑1 (MQ=255)                                                                             aaaaGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGa                                                     <  1:454487/140‑1 (MQ=255)                                                                                  cgcCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACatta                                                >  2:740496/1‑140 (MQ=255)                                                                                  cgcCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACatta                                                >  2:775126/1‑140 (MQ=255)                                                                                   gcCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACattat                                               >  2:129938/1‑140 (MQ=255)                                                                                            ggTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCa                                                       <  2:28209/123‑1 (MQ=255)                                                                                            ggTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCa                                                       >  1:28209/1‑123 (MQ=255)                                                                                              tAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGa                                    <  1:775126/140‑1 (MQ=255)                                                                                                aTTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACt                                  <  2:443514/140‑1 (MQ=255)                                                                                                aTTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACt                                  <  2:500264/140‑1 (MQ=255)                                                                                                aTTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACt                                  <  1:740496/140‑1 (MQ=255)                                                                                                aTTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACt                                  <  1:688169/140‑1 (MQ=255)                                                                                                       cAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTc                           >  2:105152/1‑140 (MQ=255)                                                                                                       cAGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTc                           >  1:675555/1‑140 (MQ=255)                                                                                                        aGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAGCCCGGCCCCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCa                          <  1:472063/140‑1 (MQ=255)                                                                                                        aGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCa                          <  2:616289/140‑1 (MQ=255)                                                                                                        aGGAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCa                          <  1:312744/140‑1 (MQ=255)                                                                                                          gAATATCATTACGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCAtt                        >  2:325524/1‑140 (MQ=255)                                                                                                                     cGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCg             <  1:611281/140‑1 (MQ=255)                                                                                                                     cGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCg             <  2:193631/140‑1 (MQ=255)                                                                                                                     cGGCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCg             <  2:406762/140‑1 (MQ=255)                                                                                                                       gCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCa                          >  2:69536/1‑125 (MQ=255)                                                                                                                       gCTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCa                          <  1:69536/125‑1 (MQ=255)                                                                                                                        cTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCaa                >  2:635223/1‑134 (MQ=255)                                                                                                                        cTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCaa                <  1:635223/134‑1 (MQ=255)                                                                                                                        cTGTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTc          >  2:804065/1‑140 (MQ=255)                                                                                                                          gTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTcgc        <  2:675555/140‑1 (MQ=255)                                                                                                                          gTCGATCCCCACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTcgc        <  1:332778/140‑1 (MQ=255)                                                                                                                                ccccACTGCCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATAc  <  1:92401/140‑1 (MQ=255)                                                                                                                                        |                                                                                                                                    AGCCGCCCAGAGAATAACTGCCCACACTGCCATGTCCTCCGCGATCAAAACCGATATGTGAATGGGAATAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATAC  >  NC_000913/2778718‑2778984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑