New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 375100NA (NA)14 (0.250) 11/236 3.3 NA noncoding (19/36 nt) other REP31d
?NC_000913 = 377352 NA (NA)noncoding (17/37 nt) other REP32a
Rejected: Coverage evenness skew score above cutoff.

AACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/374945‑375100
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggcctgataagacgcgCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCGCGCTGTGCAACACTATACTGCTG  <  NC_000913/377352‑377215
                                                                                                                                                                                                                                                                                                      
AACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTA                                                                                                                                                            <  1:316118/140‑1
 ACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAG                                                                                                                                                           <  1:703666/140‑1
   GCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGC                                                                                                                                                         <  1:989870/140‑1
      TTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTG                                                                                                                                                      >  2:493298/1‑140
      TTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATAGCGCGGGAATTTGTAGGCCTG                                                                                                                                                      >  2:308002/1‑140
       TATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGA                                                                                                                                                     <  2:246460/140‑1
          CCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAA                                                                                                                                                  <  2:960656/140‑1
          CCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAA                                                                                                                                                  <  2:693446/140‑1
           CGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAG                                                                                                                                                 <  1:270295/140‑1
           CGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAG                                                                                                                                                 <  2:1201273/140‑1
             GCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAG                                                                                                                                                 <  2:303514/138‑1
             GCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAG                                                                                                                                                 >  1:303514/1‑138
                       GGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAA                                                                                                                                                  <  1:197300/127‑1
                       GGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAA                                                                                                                                                  >  2:197300/1‑127
                              GAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCAAAGCGTCGCATC                                                                                                                              <  1:493298/140‑1
                              GAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATAGCGCGGGAATTTGTAGGCCTGATAAGACGCGCAAAGCGTCGCATC                                                                                                                              <  1:308002/140‑1
                                                                                 CGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCAC                                                                           >  1:98330/1‑140
                                                                                 CGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGG                                                                              >  2:338925/1‑137
                                                                                 CGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGG                                                                              <  1:338925/137‑1
                                                                                 CGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAG                                                                               <  1:26350/136‑1
                                                                                 CGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAG                                                                               >  2:26350/1‑136
                                                                                                     AACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGT                                                       >  1:50808/1‑140
                                                                                                             ATCCGGCCTACGGATGGCGCGAGAATTTGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCA                                               >  1:270961/1‑140
                                                                                                                  GCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTG                                          >  1:458380/1‑140
                                                                                                                      ACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCT                                      <  2:50808/140‑1
                                                                                                                            GGCGCGGGAATTTGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCG                                >  1:305055/1‑140
                                                                                                                             GCGCGGGAATTTGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGC                               >  2:325007/1‑140
                                                                                                                                 GGGAATTTGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAG                           >  1:965894/1‑140
                                                                                                                                         GTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCGCGCTGT                   >  2:184680/1‑140
                                                                                                                                          TAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCGCG                       <  1:235997/135‑1
                                                                                                                                          TAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCGCG                       >  2:235997/1‑135
                                                                                                                                           AGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCGCGCTGTGC                 >  1:953435/1‑140
                                                                                                                                           AGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCGCGCTGTGC                 <  2:694862/140‑1
                                                                                                                                             GCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCGCGCTGTGCAA               <  2:249675/140‑1
                                                                                                                                             GCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCGCGCTGTGCAA               <  1:833998/140‑1
                                                                                                                                             GCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCGCGCTGTGCAA               >  2:524729/1‑140
                                                                                                                                             GCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCGCGCTGTGCAA               <  1:325007/140‑1
                                                                                                                                               CTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCGCGCTGTGCAACA             <  2:186283/140‑1
                                                                                                                                                  ATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATATGGGTCGTCTTCATCCTGCTCTTCGGCGATGAGCGCGCTGTGCAAGACTA          >  2:523170/1‑140
                                                                                                                                                  ATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCGCGCTGTGCAACACTA          <  2:793180/140‑1
                                                                                                                                                   TAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCGCGCTGTGCAACACTAT         <  1:273557/140‑1
                                                                                                                                                       ACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCGCGCTGTGCAACA             >  1:798797/1‑132
                                                                                                                                                       ACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCGCGCTGTGCAACA             <  2:798797/132‑1
                                                                                                                                                        CGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCGCGCTGTG                  >  2:455089/1‑126
                                                                                                                                                        CGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCGCGCTGTG                  <  1:455089/126‑1
                                                                                                                                                          CGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCGCGCTGTGCAACACTATACTGCTG  >  2:1156905/1‑140
                                                                                                                                                                                                                                                                                                      
AACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/374945‑375100
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggcctgataagacgcgCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCGCGCTGTGCAACACTATACTGCTG  <  NC_000913/377352‑377215

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.