New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2899597	46 (1.450)	4 (0.140)	4/256	3.0	8.2%	coding (677/786 nt)	ygcW	putative deoxygluconate dehydrogenase
	?	NC_000913	= 2899686	47 (1.600)					coding (588/786 nt)	ygcW	putative deoxygluconate dehydrogenase
Rejected: Frequency below/above cutoff threshold.

AGAAAACAGAAACCACCGTTATGGGTTAGCGCACTAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGCCAGGGGCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATA  >  NC_000913/2899463‑2899736                                                                                                                                       |                                                                                                                                            agaAAACAGAAACCACCGTTATGGGTTAGCGCACTAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACgg                                                                                                                                        >  2:456097/1‑140 (MQ=255)  gaAAACAGAAACCACCGTTATGGGTTAGCGCACTAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGt                                                                                                                                       <  2:355562/140‑1 (MQ=255)     aaCAGAAACCACCGTTATGGGTTAGCGCACTAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTg                                                                                                                                    >  1:409564/1‑140 (MQ=255)        aGAAACCACCGTTATGGGTTAGCGCACTAAATAGCCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCg                                                                                                                                 <  1:449717/140‑1 (MQ=255)          aacccaccGTTATGGGTTAGCGCACTAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGa                                                                                                                               <  1:119693/137‑1 (MQ=255)          aaaCCACCGTTATGGGTTAGCGCACTAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGa                                                                                                                               >  1:59316/1‑140 (MQ=255)            accaccGTTATGGGTTAGCGCACTAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAat                                                                                                                             <  1:176567/140‑1 (MQ=255)                 cGTTATGGGTTAGCGCACTAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGAt                                                                                                                        <  2:505152/140‑1 (MQ=255)                  gTTATGGGTTAGCGCACTAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATc                                                                                                                       >  1:386625/1‑140 (MQ=255)                     aTGGGTTAGCGCACTAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAg                                                                                                                    >  2:520681/1‑140 (MQ=255)                       gggTTAGCGCACTAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGaa                                                                                                                  <  1:456097/140‑1 (MQ=255)                             gcgcACTAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCt                                                                                                            >  1:336951/1‑140 (MQ=255)                              cgcACTAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATg                                                                                                                          <  2:119314/125‑1 (MQ=255)                              cgcACTAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATg                                                                                                                          >  1:119314/1‑125 (MQ=255)                                   tAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTgg                                                                                                      >  2:486333/1‑140 (MQ=255)                                               aTCAACCATTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTAc                                                                                          >  2:26814/1‑140 (MQ=255)                                                     cACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCtggctattatgcaacagatattacgctggcgacacgcagtaatccagaaaccaatca                                                                                    >  1:310547‑M1/1‑83 (MQ=255)                                                         aataaATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGc                                                                                <  2:220960/140‑1 (MQ=255)                                                          ataaATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGcc                                                                               <  1:26814/140‑1 (MQ=255)                                                               tGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCtggctattatgcaacagatattacgctggcgacacgcagtaatccagaaaccaatcagcgcgttctt                                                                          >  2:486138‑M1/1‑73 (MQ=255)                                                                  ccGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAat                                                                       <  2:59316/140‑1 (MQ=255)                                                                  ccGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAat                                                                       >  2:284856/1‑140 (MQ=255)                                                                    gTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAatat                                                                     <  2:336951/140‑1 (MQ=255)                                                                    gTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAatat                                                                     <  1:258520/140‑1 (MQ=255)                                                                     ttGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGcc                                                                               <  1:360352/129‑1 (MQ=255)                                                                     ttGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGcc                                                                               >  2:360352/1‑129 (MQ=255)                                                                      tGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCtggctattatgcaacagatattacgctggcgacacgcagtaatccagaaaccaatcagcgcgttcttgatcata                                                                   <  1:486138‑M1/140‑75 (MQ=255)                                                                      tGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCt                                                                   >  2:304497/1‑140 (MQ=255)                                                                       gACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCtggctattatgcaacagatattacgctggcgacacgcagtaatccagaaaccaatcagcgcgttcttgatcatat                                                                  <  2:310547‑M1/140‑76 (MQ=255)                                                                        aCATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGt                                                                 <  1:486333/140‑1 (MQ=255)                                                                         cATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGtt                                                                <  1:284856/140‑1 (MQ=255)                                                                          aTAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTg                                                               <  1:304497/140‑1 (MQ=255)                                                                            aaTTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCa                                                             >  2:173990/1‑140 (MQ=255)                                                                              ttCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCata                                                           <  2:149879/140‑1 (MQ=255)                                                                                  aTGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAAGGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAg                                                       >  2:472386/1‑140 (MQ=255)                                                                                   tGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTg                                                                  >  2:518622/1‑128 (MQ=255)                                                                                   tGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTg                                                                  <  1:518622/128‑1 (MQ=255)                                                                                    gCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTACCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGCTTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGcc                                                     >  2:109535/1‑140 (MQ=255)                                                                                            tGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGCCAggggcga                                             >  2:409564‑M2/1‑133 (MQ=255)                                                                                             gCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGCCAggggcgat                                            <  1:96915‑M2/140‑9 (MQ=255)                                                                                                 ggAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGCCAGGGGCGATACCa                                        <  2:314491/140‑1 (MQ=255)                                                                                                   aaTACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGCCAGGGGCGATACCAtt                                      <  2:436784/140‑1 (MQ=255)                                                                                                        ggCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGCAATATCTGTTGCATAATAGCCAGGGGCGATACCATTTACCt                                 <  2:294689/140‑1 (MQ=255)                                                                                                             cgcCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGCCAGGGGCGATACCATTTACCTGAata                            >  1:197764/1‑140 (MQ=255)                                                                                                             cgcCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGCCAGGGGCGATACCATTTACCTGAata                            >  2:402121/1‑140 (MQ=255)                                                                                                             cgcCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGCCAGGGGCGATACCATTTACCTGAata                            >  1:399757/1‑140 (MQ=255)                                                                                                               cccATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGCCAGGGGCGATACCATTTACCTGAatatt                          >  2:259323/1‑140 (MQ=255)                                                                                                                  aTTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGCCAGGGGCGATACCATTTACCTGAatattata                       <  2:399757/140‑1 (MQ=255)                                                                                                                  aTTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGCCAGGGGCGATACCATTTACCTGAatattata                       >  1:357916/1‑140 (MQ=255)                                                                                                                           tGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGCCAGGGGCGATACCATTTACCTGAATATTATATTGACCTAg              <  2:242230/140‑1 (MQ=255)                                                                                                                             aGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGCCAGGGGCGATACCATTTACCTGAATATTATATTGACCTAGtt            <  2:386625/140‑1 (MQ=255)                                                                                                                                aTCGCCCCtggctattatgcaacagatattacgctggcgacacgcagtaatccagaaaccaatcagcgcgttcttgatcatattccggcaaaccgttggggcgatactcaggatttaatgggcgcagccgtattcctcgc         <  1:96915‑M1/140‑133 (MQ=255)                                                                                                                                 tCGCCCCtggctattatgcaacagatattacgctggcgacacgcagtaatccagaaaccaatcagcgcgttcttgatcatattccggcaaaccgttggggcgatactcaggatttaatgggcgcagccgtattcctcgca        >  2:409564‑M1/1‑7 (MQ=255)                                                                                                                                       cAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGCCAGGGGCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATa  >  2:126619/1‑140 (MQ=255)                                                                                                                                       |                                                                                                                                            AGAAAACAGAAACCACCGTTATGGGTTAGCGCACTAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGCCAGGGGCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATA  >  NC_000913/2899463‑2899736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.