Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 3,428,918 | Δ1 bp | intergenic (‑156/‑318) | rrsD ← / → yrdA | 16S ribosomal RNA/protein YrdA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,428,917 | 0 | G | . | 94.1% | 110.2 / 3.0 | 34 | intergenic (‑155/‑319) | rrsD/yrdA | 16S ribosomal RNA/protein YrdA |
Reads supporting (aligned to +/- strand): ref base G (1/1); new base . (14/18); total (15/19) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.90e-01 |
TGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGG > NC_000913/3428870‑3429052 | tGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCg > 2:1211422/1‑140 (MQ=255) gCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGa < 2:540981/140‑1 (MQ=255) cccACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAGCCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGa < 1:1023445/139‑1 (MQ=11) cccACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGa > 2:1023445/1‑139 (MQ=255) cccACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGAc > 1:515312/1‑140 (MQ=255) ccACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGAcc < 1:838312/140‑1 (MQ=255) ccACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGAcc < 1:682888/140‑1 (MQ=255) ccACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGAcc < 2:816852/140‑1 (MQ=255) acaGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGAcc < 1:340507/136‑1 (MQ=255) acaGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGAcc > 2:340507/1‑136 (MQ=255) aTTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCtgtg > 1:304068/1‑140 (MQ=255) ttGTCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGa < 2:1105352/140‑1 (MQ=255) tCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAgt > 2:116058/1‑140 (MQ=255) tGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATc < 1:621216/129‑1 (MQ=14) tGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATc > 2:621216/1‑129 (MQ=11) aaaTTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCa > 2:681501/1‑140 (MQ=17) aTTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACg < 2:515312/140‑1 (MQ=255) ttAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTgt < 2:1058009/140‑1 (MQ=255) aaaGAGCAGTTGCGACGCGCCTT‑‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACg < 1:525455/134‑1 (MQ=17) aaaGAGCAGTTGCGACGCGCCTT‑‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACg > 2:525455/1‑134 (MQ=17) cAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCaa > 2:649844/1‑140 (MQ=255) cAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCaa > 2:934381/1‑140 (MQ=18) cAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCaa > 2:452302/1‑140 (MQ=18) cAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCaa > 1:387863/1‑140 (MQ=18) cAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCaa < 1:247830/140‑1 (MQ=255) gTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGtt < 2:344227/128‑1 (MQ=17) gTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGtt > 1:344227/1‑128 (MQ=17) gTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACg > 2:625213/1‑140 (MQ=18) ttGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACgg < 1:116058/140‑1 (MQ=255) gCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAg < 2:387863/140‑1 (MQ=255) gCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAg < 2:173324/140‑1 (MQ=255) gCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAg < 1:452302/140‑1 (MQ=255) cGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAgg < 1:625213/140‑1 (MQ=255) cGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAgg < 2:809434/140‑1 (MQ=255) | TGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGG > NC_000913/3428870‑3429052 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |