Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,412,779	(T)6→5	coding (457/1236 nt)	intR ←	Rac prophage; putative integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,412,774	0	T	.	100.0%	320.5 / NA	76	coding (462/1236 nt)	intR	Rac prophage; putative integrase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (35/41);  total (35/41)

CAGGCTTTATTCTGTTTCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCTTTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTGAGTGTTTT  >  NC_000913/1412638‑1412905                                                                                                                                         |                                                                                                                                    cAGGCTTTATTCTGTTTCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttt                                                                                                                                  >  1:365208/1‑140 (MQ=255) cAGGCTTTATTCTGTTTCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtt                                                                                                                                    <  2:260550/138‑1 (MQ=255) cAGGCTTTATTCTGTTTCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtt                                                                                                                                    >  1:260550/1‑138 (MQ=255)     cTTTATTCTGTTTCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttgtt                                                                                                                              <  2:1221589/140‑4 (MQ=255)     cTTTATTCTGTTTCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttgtt                                                                                                                              <  2:294937/140‑4 (MQ=255)      tttATTCTGTTTCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttgttg                                                                                                                             <  2:1037147/140‑5 (MQ=255)         aTTCTGTTTCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGAt                                                                                                                         >  2:731937/1‑140 (MQ=255)          ttCTGTTTCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATc                                                                                                                        <  1:771068/140‑1 (MQ=255)          ttCTGTTTCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATc                                                                                                                        <  1:249887/140‑1 (MQ=255)              gTTTCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTgg                                                                                                                    >  1:608073/1‑140 (MQ=255)              gTTTCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTgg                                                                                                                    >  1:709337/1‑140 (MQ=255)              gTTTCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGC‑AAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttgtt                                                                                                                              >  1:966813/1‑127 (MQ=255)              gTTTCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGC‑AAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttgtt                                                                                                                              <  2:966813/130‑4 (MQ=255)              gTTTCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGATGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCATCC‑TTTTTGTTGGATCTTgg                                                                                                                    >  1:922401/1‑140 (MQ=255)               tttCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATc                                                                                                                        <  2:715668/135‑1 (MQ=255)               tttCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATc                                                                                                                        >  1:715668/1‑135 (MQ=255)               tttCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGa                                                                                                                   <  1:791968/140‑1 (MQ=255)                ttCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGAt                                                                                                                  <  1:721482/140‑1 (MQ=255)                ttCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGAt                                                                                                                  <  2:318863/140‑1 (MQ=255)                  cGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTa                                                                                                                >  2:438668/1‑140 (MQ=255)                    cTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATc                                                                                                              <  1:438751/140‑1 (MQ=255)                    cTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATc                                                                                                              >  2:438751/1‑140 (MQ=255)                         aTTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATc                                                                                                              <  2:1054207/135‑1 (MQ=255)                         aTTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATc                                                                                                              >  1:1054207/1‑135 (MQ=255)                         aTTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGt                                                                                                         >  2:905061/1‑140 (MQ=255)                                 aCTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGtt                                                                                                 >  2:195610/1‑140 (MQ=255)                                       tCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCa                                                                                           <  1:905061/140‑1 (MQ=255)                                        cAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTa                                                                                                        <  2:228935/126‑1 (MQ=255)                                        cAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTa                                                                                                        >  1:228935/1‑126 (MQ=255)                                           aTGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATgca                                                                                       <  2:389643/140‑1 (MQ=255)                                            tggtttggttGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATgcag                                                                                      <  2:608073/140‑1 (MQ=255)                                                 tggttGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGtt                                                                                 >  2:473185/1‑140 (MQ=255)                                                   gttGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAAAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCa                                                                               >  1:561848/1‑140 (MQ=255)                                                        tataAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCg                                                                          <  1:731937/140‑1 (MQ=255)                                                         ataAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCgg                                                                         <  1:114589/140‑1 (MQ=255)                                                         ataAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCgg                                                                         <  1:368892/140‑1 (MQ=255)                                                         ataAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCgg                                                                         <  1:438668/140‑1 (MQ=255)                                                             aTCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGt                                                                     >  2:153754/1‑140 (MQ=255)                                                                 cGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTaa                                                                 >  1:610473/1‑140 (MQ=255)                                                                  gACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCgg                                                                         <  1:544174/131‑1 (MQ=255)                                                                  gACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCgg                                                                         >  2:544174/1‑131 (MQ=255)                                                                  gACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGATCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAg                                                                >  2:918590/1‑140 (MQ=255)                                                                   aCTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCgg                                                                         >  1:372270/1‑130 (MQ=255)                                                                   aCTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCgg                                                                         <  2:372270/130‑1 (MQ=255)                                                                   aCTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGa                                                               <  2:188467/140‑1 (MQ=255)                                                                   aCTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGa                                                               <  1:539615/140‑1 (MQ=255)                                                                   aCTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGA‑TATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGat                                                              >  2:796426/1‑140 (MQ=255)                                                                     tGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGata                                                             <  1:473185/140‑1 (MQ=255)                                                                      gATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCCACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGatat                                                            <  2:922401/140‑1 (MQ=255)                                                                       aTACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCg                                                                          >  1:558766/1‑125 (MQ=255)                                                                       aTACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCg                                                                          <  2:558766/125‑1 (MQ=255)                                                                         aCGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGc                                                         <  2:712567/140‑1 (MQ=255)                                                                           gCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCta                                                       <  2:885775/140‑1 (MQ=255)                                                                           gCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGA‑TATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCtat                                                      <  1:796426/140‑1 (MQ=255)                                                                            cAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCtat                                                      <  1:1252992/140‑1 (MQ=255)                                                                             aaaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCtata                                                     <  2:709337/140‑1 (MQ=255)                                                                               aaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAAc                                                   >  2:65509/1‑140 (MQ=255)                                                                               aaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAAc                                                   >  2:736663/1‑140 (MQ=255)                                                                                aCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACg                                                  <  1:267254/140‑1 (MQ=255)                                                                                 cGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCTTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGa                                                 <  1:918590/140‑1 (MQ=255)                                                                                 cGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGa                                                 >  2:44749/1‑140 (MQ=255)                                                                                 cGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGa                                                 >  2:902885/1‑140 (MQ=255)                                                                                 cGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGa                                                 <  2:698637/140‑1 (MQ=255)                                                                                 cGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGACTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATaa                                                    <  1:344968/137‑1 (MQ=255)                                                                                 cGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGACTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATaa                                                    >  2:344968/1‑137 (MQ=255)                                                                                         cGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGa                                         <  1:153754/140‑1 (MQ=255)                                                                                           aaCAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGata                                       >  2:884659/1‑140 (MQ=255)                                                                                                     ggCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGt                                <  1:279929/137‑1 (MQ=255)                                                                                                     ggCGATATAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGt                                >  2:279929/1‑137 (MQ=255)                                                                                                         atatAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTTGATCTTCGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTca                         <  2:925580/140‑1 (MQ=255)                                                                                                         atatAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTca                         <  2:458893/140‑1 (MQ=255)                                                                                                         atatAGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTca                         <  1:65509/140‑1 (MQ=255)                                                                                                          tataGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTcac                        >  2:1069531/1‑140 (MQ=255)                                                                                                           ataGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTcaca                       <  2:90987/140‑1 (MQ=255)                                                                                                           ataGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTcaca                       <  2:983829/140‑1 (MQ=255)                                                                                                           ataGTTATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTcaca                       <  1:902885/140‑1 (MQ=255)                                                                                                               ttATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAatt                   >  2:582876/1‑140 (MQ=255)                                                                                                                tATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAatt                   >  1:264183/1‑139 (MQ=255)                                                                                                                tATCAACTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAatt                   <  2:264183/139‑1 (MQ=255)                                                                                                                    aaCTGTGCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAattattat              >  2:380530/1‑140 (MQ=255)                                                                                                                        gtgCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTg          >  2:396626/1‑140 (MQ=255)                                                                                                                        gtgCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTg          >  2:1174547/1‑140 (MQ=255)                                                                                                                         tgCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTGa         >  2:642383/1‑140 (MQ=255)                                                                                                                         tgCGCACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTGa         <  1:736663/140‑1 (MQ=255)                                                                                                                           cgcACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTGa         <  2:950231/138‑1 (MQ=255)                                                                                                                           cgcACGGTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTGa         >  1:950231/1‑138 (MQ=255)                                                                                                                                ggTTCTTCC‑TTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTGAGTGtttt  >  1:290370/1‑140 (MQ=255)                                                                                                                                         |                                                                                                                                    CAGGCTTTATTCTGTTTCGCTGTAATTTTTTTACTCCTTCAAATGGTTTGGTTGATATAAATCCCGACTGATACGCAAAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCTTTTTTGTTGGATCTTGGATTATCCAGGTAAAGCGTTTCTCCATGCAGCAGTTCATTCCGGTAGTTTAAGATATCGCTATAACGAATATGTGATATCGGGGTACTTTCACAAATTATTATTCTGAGTGTTTT  >  NC_000913/1412638‑1412905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑