Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,390,414	T→C	F299L (TTT→CTT)	aaeR →	LysR‑type transcriptional regulator AaeR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,390,414	0	T	C	100.0%	325.1 / NA	91	F299L (TTT→CTT)	aaeR	LysR‑type transcriptional regulator AaeR
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (40/51);  total (40/51)

GGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTA  >  NC_000913/3390278‑3390546                                                                                                                                         |                                                                                                                                     ggAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTc                                                                                                                                   <  1:1216034/140‑1 (MQ=255)  gagaTCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTA‑‑TTGTTGAGGTCGGTAAATTGCTTCAgg                                                                                                                                <  2:972644/140‑1 (MQ=255)    gaTCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAgg                                                                                                                                <  1:1249920/140‑1 (MQ=255)      tCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGgag                                                                                                                              <  1:946104/140‑1 (MQ=255)       ccTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGgaga                                                                                                                             >  2:368889/1‑140 (MQ=255)       ccTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGgaga                                                                                                                             >  1:380825/1‑140 (MQ=255)         tgctgcCGCGTTACCGGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATg                                                                                                                           >  1:778003/1‑140 (MQ=255)            tgcCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAGGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCAc                                                                                                                        <  2:1143447/140‑1 (MQ=255)            tgcCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCAc                                                                                                                        >  1:963855/1‑140 (MQ=255)               cgcgTTACCAGTCAGATCCACGCC‑‑GTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGgcg                                                                                                                   <  1:1216877/140‑1 (MQ=255)                gcgTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGgc                                                                                                                    >  2:1125721/1‑140 (MQ=255)                 cgTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGgcg                                                                                                                   <  2:963855/140‑1 (MQ=255)                 cgTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGgcg                                                                                                                   >  2:1206099/1‑140 (MQ=255)                  gTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGgcgc                                                                                                                  >  1:216809/1‑140 (MQ=255)                      ccAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGa                                                                                                              <  2:688380/140‑1 (MQ=255)                      ccAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGa                                                                                                              <  1:1125721/140‑1 (MQ=255)                       cAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGaa                                                                                                             <  1:404557/140‑1 (MQ=255)                        aGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGaaa                                                                                                            <  2:961943/140‑1 (MQ=255)                            aGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAgaga                                                                                                        >  2:794949/1‑140 (MQ=255)                               tCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGt                                                                                                     <  2:1157316/140‑1 (MQ=255)                               tCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGt                                                                                                     <  2:339527/140‑1 (MQ=255)                                 cACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTaa                                                                                                   >  1:653246/1‑140 (MQ=255)                                  aCGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAAt                                                                                                  <  2:451547/140‑1 (MQ=255)                                  aCGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAAt                                                                                                  <  2:658853/140‑1 (MQ=255)                                   cGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAAtt                                                                                                 >  1:569963/1‑140 (MQ=255)                                   cGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAAtt                                                                                                 >  1:1078610/1‑140 (MQ=255)                                     cccGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCa                                                                                               <  1:1231289/140‑1 (MQ=255)                                        ggTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCatat                                                                                            >  1:1235638/1‑140 (MQ=255)                                        ggTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCatat                                                                                            >  1:236052/1‑140 (MQ=255)                                         gTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAGTTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATAtt                                                                                           >  1:879394/1‑140 (MQ=255)                                         gTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCatat                                                                                            <  1:696987/139‑1 (MQ=255)                                         gTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCatat                                                                                            >  2:696987/1‑139 (MQ=255)                                         gTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATAtt                                                                                           <  2:653246/140‑1 (MQ=255)                                         gTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATAtt                                                                                           <  1:794949/140‑1 (MQ=255)                                         gTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATAtt                                                                                           >  2:646295/1‑140 (MQ=255)                                         gTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATAtt                                                                                           >  1:343972/1‑140 (MQ=255)                                          tttATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTg                                                                                          >  2:1152294/1‑140 (MQ=255)                                          tttATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTg                                                                                          <  1:1152766/140‑1 (MQ=255)                                               gCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTg                                                                                     <  1:697304/140‑1 (MQ=255)                                                    atataCCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACg                                                                                >  1:961994/1‑140 (MQ=255)                                                    atataCCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACg                                                                                >  2:1232096/1‑140 (MQ=255)                                                    atataCCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACg                                                                                >  2:962251/1‑140 (MQ=255)                                                    atataCCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACg                                                                                <  2:1235638/140‑1 (MQ=255)                                                    atataCCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACg                                                                                <  2:190744/140‑1 (MQ=255)                                                    atataCCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACg                                                                                <  2:310860/140‑1 (MQ=255)                                                    atataCCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACg                                                                                <  2:961994/140‑1 (MQ=255)                                                    atataCCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACg                                                                                <  1:646295/140‑1 (MQ=255)                                                    atataCCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACg                                                                                >  2:750505/1‑140 (MQ=255)                                                    atataCCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACg                                                                                <  1:1206099/140‑1 (MQ=255)                                                          cGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTAc                                                                          <  2:1078610/140‑1 (MQ=255)                                                            aaaaaGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACg                                                                                >  2:960150/1‑132 (MQ=255)                                                            aaaaaGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACg                                                                                <  1:960150/132‑1 (MQ=255)                                                             aaaaGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACaaa                                                                       >  1:854537/1‑140 (MQ=255)                                                               aaGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTa                                                                                  <  2:709817/127‑1 (MQ=255)                                                               aaGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTa                                                                                  >  1:709817/1‑127 (MQ=255)                                                               aaGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACg                                                                                <  2:913049/129‑1 (MQ=255)                                                               aaGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACg                                                                                >  1:913049/1‑129 (MQ=255)                                                               aaGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAAcc                                                                     >  1:809838/1‑140 (MQ=255)                                                                 gATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCtg                                                                   >  2:15249/1‑140 (MQ=255)                                                                      gCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCa                                                              <  2:854537/140‑1 (MQ=255)                                                                           cGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACggg                                                         <  1:1152294/140‑1 (MQ=255)                                                                           cGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACggg                                                         <  2:569963/140‑1 (MQ=255)                                                                                aaGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTccc                                                    <  1:962251/140‑1 (MQ=255)                                                                                  ggTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATTCACGGGCGCGGGAAAGAGTAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCt                                                  <  2:778003/140‑1 (MQ=255)                                                                                  ggTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAGAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCt                                                  <  2:809838/140‑1 (MQ=255)                                                                                  ggTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCt                                                  <  2:166106/140‑1 (MQ=255)                                                                                  ggTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCt                                                  <  2:216809/140‑1 (MQ=255)                                                                                  ggTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCt                                                  <  2:380825/140‑1 (MQ=255)                                                                                  ggTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCt                                                  <  2:1148526/140‑1 (MQ=255)                                                                                  ggTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCt                                                  <  1:750505/140‑1 (MQ=255)                                                                                  ggTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCt                                                  <  2:343972/140‑1 (MQ=255)                                                                                            gTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAAcc                                        >  2:799303/1‑140 (MQ=255)                                                                                             tGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAAccc                                       >  1:182629/1‑140 (MQ=255)                                                                                              gATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCt                                      <  1:111239/140‑1 (MQ=255)                                                                                              gATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCt                                      <  1:217784/140‑1 (MQ=255)                                                                                              gATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCt                                      >  2:604340/1‑140 (MQ=255)                                                                                              gATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCt                                      >  2:111239/1‑140 (MQ=255)                                                                                                tCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCa                                    <  1:1232096/140‑1 (MQ=255)                                                                                                 cAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCAc                                   <  1:604340/140‑1 (MQ=255)                                                                                                  aaCTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCAcc                                  <  2:885266/140‑1 (MQ=255)                                                                                                   aCTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCAccc                                 >  2:94890/1‑140 (MQ=255)                                                                                                   aCTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCAccc                                 >  1:698714/1‑140 (MQ=255)                                                                                                    cTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCt                                      <  1:460940/134‑1 (MQ=255)                                                                                                    cTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCt                                      >  2:460940/1‑134 (MQ=255)                                                                                                    cTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCAcccc                                >  2:160240/1‑140 (MQ=255)                                                                                                     tCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCa                               <  1:15249/140‑1 (MQ=255)                                                                                                             ggATTATTTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCg                       <  2:236052/140‑1 (MQ=255)                                                                                                                 tattTTGTTGAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAggg                   >  2:75773/1‑140 (MQ=255)                                                                                                                        ttgAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGtt            >  2:823786/1‑140 (MQ=255)                                                                                                                         tgAGGTCGGTAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTc           >  1:1161790/1‑140 (MQ=255)                                                                                                                                  tAAATTGCTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAAATCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTa  >  2:1120591/1‑140 (MQ=255)                                                                                                                                         |                                                                                                                                     GGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTA  >  NC_000913/3390278‑3390546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑