BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,539,902	T→C	intergenic (‑401/‑1055)	nanC ← / → fimB	N‑acetylneuraminic acid outer membrane channel/regulator for fimA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,539,902	0	T	C	100.0%	431.1 / NA	120	intergenic (‑401/‑1055)	nanC/fimB	N‑acetylneuraminic acid outer membrane channel/regulator for fimA
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (57/63); total (57/63)

Only 100 of 120 total aligned reads displayed.

ATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGTCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGT  >  NC_000913/4539767‑4540035

aTCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCa                                                                                                                                   <  2:472623/140‑1 (MQ=255)

aTCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCa                                                                                                                                   <  1:1109316/140‑1 (MQ=255)

 tCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCAt                                                                                                                                  >  1:1170684/1‑140 (MQ=255)

  ccATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGGTGTTTGCCATAGATTGCGAGATGCCCTGCCTCAtt                                                                                                                                 >  2:866895/1‑140 (MQ=255)

  ccATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCAtt                                                                                                                                 >  2:752119/1‑140 (MQ=255)

  ccATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTAGCCATAGATTGCGAGATGCCCTGCCTCAtt                                                                                                                                 <  2:1148793/140‑1 (MQ=255)

   cATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTg                                                                                                                                >  1:235132/1‑140 (MQ=255)

   cATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTg                                                                                                                                >  1:535769/1‑140 (MQ=255)

        tACCCAGAGTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCGGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTAt                                                                                                                           <  2:1096185/140‑1 (MQ=255)

        tACCCAGAGTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTAt                                                                                                                           <  1:382928/140‑1 (MQ=255)

               agTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGa                                                                                                                               >  1:710546/1‑129 (MQ=255)

               agTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTg                                                                                                                    >  1:1153347/1‑140 (MQ=255)

               agTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTg                                                                                                                    <  1:794630/140‑1 (MQ=255)

               agTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTg                                                                                                                    <  1:1240630/140‑1 (MQ=255)

               agTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTg                                                                                                                    <  1:4713/140‑1 (MQ=255)

               agTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTg                                                                                                                    >  2:350385/1‑140 (MQ=255)

               agTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTg                                                                                                                    >  2:895010/1‑140 (MQ=255)

               agTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTg                                                                                                                    >  1:57732/1‑140 (MQ=255)

               agTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTg                                                                                                                    <  2:658408/140‑1 (MQ=255)

               agTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTg                                                                                                                    <  1:895010/140‑1 (MQ=255)

                gTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGc                                                                                                                   <  1:668468/140‑1 (MQ=255)

                gTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGc                                                                                                                   <  1:90230/140‑1 (MQ=255)

                 tCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCa                                                                                                                  <  2:1170684/140‑1 (MQ=255)

                  cATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCAc                                                                                                                 <  1:752119/140‑1 (MQ=255)

                  cATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCAc                                                                                                                 <  2:535769/140‑1 (MQ=255)

                   aTAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCAcc                                                                                                                >  2:15967/1‑140 (MQ=255)

                    tAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCt                                                                                                               <  2:481262/140‑1 (MQ=255)

                    tAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCt                                                                                                               >  2:1059717/1‑140 (MQ=255)

                        aTAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTtat                                                                                                           <  1:333707/140‑1 (MQ=255)

                         tAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTg                                                                                                                    >  1:102344/1‑130 (MQ=255)

                         tAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTg                                                                                                                    <  2:102344/130‑1 (MQ=255)

                         tAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTtata                                                                                                          <  2:57732/140‑1 (MQ=255)

                         tAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTtata                                                                                                          <  1:1059717/140‑1 (MQ=255)

                         tAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTtata                                                                                                          <  1:15967/140‑1 (MQ=255)

                         tAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTtata                                                                                                          <  1:144919/140‑1 (MQ=255)

                         tAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTtata                                                                                                          <  1:697236/140‑1 (MQ=255)

                         tAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTtata                                                                                                          <  2:1104261/140‑1 (MQ=255)

                         tAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTtata                                                                                                          <  2:559257/140‑1 (MQ=255)

                         tAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTtata                                                                                                          <  2:201199/140‑1 (MQ=255)

                           gAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTgg                                                                                                                      >  1:231921/1‑126 (MQ=255)

                           gAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTgg                                                                                                                      <  2:231921/126‑1 (MQ=255)

                           gAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTtata                                                                                                          >  1:178240/1‑138 (MQ=255)

                           gAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTtata                                                                                                          <  2:178240/138‑1 (MQ=255)

                            aaTGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTtat                                                                                                           >  2:837363/1‑136 (MQ=255)

                            aaTGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTtat                                                                                                           <  1:837363/136‑1 (MQ=255)

                                tCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTtat                                                                                                           >  1:678110/1‑132 (MQ=255)

                                tCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTtat                                                                                                           <  2:678110/132‑1 (MQ=255)

                                tCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTta                                                                                                   >  2:72542/1‑140 (MQ=255)

                                tCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTta                                                                                                   >  1:761865/1‑140 (MQ=255)

                                 cTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTtat                                                                                                  >  1:139915/1‑140 (MQ=255)

                                  tGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTtata                                                                                                 >  1:1240468/1‑140 (MQ=255)

                                         ctcATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCATCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATc                                                                                          <  2:1175029/140‑1 (MQ=255)

                                         ctcATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATc                                                                                          >  1:1175029/1‑140 (MQ=255)

                                             ttttCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCaaaa                                                                                      <  2:384671/140‑1 (MQ=255)

                                                  atatTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCAc                                                                                 <  2:1218989/140‑1 (MQ=255)

                                                  atatTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCAc                                                                                 <  1:1081046/140‑1 (MQ=255)

                                                   tatTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACg                                                                                >  2:365844/1‑140 (MQ=255)

                                                     ttCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCa                                                                              <  1:548629/140‑1 (MQ=255)

                                                      tCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCaa                                                                             >  1:464014/1‑140 (MQ=255)

                                                       ccTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAAt                                                                            <  2:761865/140‑1 (MQ=255)

                                                       ccTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAAt                                                                            <  1:365844/140‑1 (MQ=255)

                                                          ttCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCa                                                                         >  2:1241136/1‑140 (MQ=255)

                                                          ttCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCa                                                                         >  2:1033804/1‑140 (MQ=255)

                                                          ttCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCa                                                                         >  2:734751/1‑140 (MQ=255)

                                                          ttCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCa                                                                         >  2:895921/1‑140 (MQ=255)

                                                           tCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCAt                                                                        <  2:139915/140‑1 (MQ=255)

                                                           tCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCAt                                                                        <  1:72542/140‑1 (MQ=255)

                                                              gACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATaca                                                                     <  1:1033804/140‑1 (MQ=255)

                                                               aCTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATacaa                                                                    >  2:33900/1‑140 (MQ=255)

                                                                        cGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAg                                                           <  2:1240468/140‑1 (MQ=255)

                                                                        cGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAg                                                           >  2:177160/1‑140 (MQ=255)

                                                                        cGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAg                                                           >  2:837018/1‑140 (MQ=255)

                                                                        cGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAg                                                           <  2:379962/140‑1 (MQ=255)

                                                                         gTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGa                                                          >  1:260662/1‑140 (MQ=255)

                                                                          ttttCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGAt                                                         >  1:813178/1‑140 (MQ=255)

                                                                             tcatcaCCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTg                                                      >  1:113622/1‑140 (MQ=255)

                                                                                       aTGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCgtgt                                            >  1:50543/1‑140 (MQ=255)

                                                                                       aTGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCgtgt                                            >  2:882581/1‑140 (MQ=255)

                                                                                       aTGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCgtgt                                            >  1:87457/1‑140 (MQ=255)

                                                                                         gagaAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTca                                          <  1:335955/140‑1 (MQ=255)

                                                                                           gaaagaaCTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTcaca                                        >  1:848083/1‑140 (MQ=255)

                                                                                            aaagaaCTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACaa                                       <  1:473694/140‑1 (MQ=255)

                                                                                              agaaCTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACaaaa                                     >  1:264213/1‑140 (MQ=255)

                                                                                                    gAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTc                               >  2:78023/1‑140 (MQ=255)

                                                                                                      aGTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGa                             >  2:906555/1‑140 (MQ=255)

                                                                                                       gTGATGTTTGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGAt                            <  1:168495/140‑1 (MQ=255)

                                                                                                             tttGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCttttt                      <  2:813178/140‑1 (MQ=255)

                                                                                                             tttGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCttttt                      <  2:848083/140‑1 (MQ=255)

                                                                                                               tGCCATAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCt                    <  1:1026417/140‑1 (MQ=255)

                                                                                                                   aTAGATTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAaga                <  2:910696/140‑1 (MQ=255)

                                                                                                                       aTTGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGaa            <  1:444613/140‑1 (MQ=255)

                                                                                                                        ttGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAg           <  2:645562/140‑1 (MQ=255)

                                                                                                                         tGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGa          >  2:682343/1‑140 (MQ=255)

                                                                                                                         tGCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGa          >  2:1159488/1‑140 (MQ=255)

                                                                                                                          gCGAGATGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGAt         <  2:113622/140‑1 (MQ=255)

                                                                                                                            gagaTGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGc       <  2:260662/140‑1 (MQ=255)

                                                                                                                            gagaTGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGc       <  1:595923/140‑1 (MQ=255)

                                                                                                                                tGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGcatgt   >  2:698646/1‑136 (MQ=255)

                                                                                                                                tGCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCAtg   >  1:636950/1‑140 (MQ=255)

                                                                                                                                 gCCCTGCCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCAtgt  >  1:204244/1‑140 (MQ=255)

ATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGTCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGT  >  NC_000913/4539767‑4540035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`