Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,597,095	A→G	pseudogene (992/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,597,095	0	A	G	100.0%	281.9 / NA	80	pseudogene (992/5422 nt)	yneO	AIDA‑I family autotransporter YneO
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (32/48);  total (32/48)

CCCCGCAGTGATAATTCCCGAATCTACTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAG  >  NC_000913/1596962‑1597230                                                                                                                                      |                                                                                                                                        ccccGCAGTGATAATTCCCGAATCTACTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTga                                                                                                                                   >  2:969334/1‑140 (MQ=255) ccccGCAGTGATAATTCCCGAATCTACTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTga                                                                                                                                   <  2:1206361/140‑1 (MQ=255) ccccGCAGTGATAATTCCCGAATCTACTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTga                                                                                                                                   <  2:873430/140‑1 (MQ=255)    cGCAGTGATAATTCCCGAATCTACTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCGATGCCCTTTATCGGTCGCGTTgacga                                                                                                                                >  2:256688/1‑140 (MQ=255)    cGCAGTGATAATTCCCGAATCTACTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTgacga                                                                                                                                >  2:1235816/1‑140 (MQ=255)    cGCAGTGATAATTCCCGAATCTACTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTgacga                                                                                                                                >  2:849502/1‑140 (MQ=255)     gCAGTGATAATTCCCGAATCTACTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTgacgac                                                                                                                               <  2:1014916/140‑1 (MQ=255)     gCAGTGATAATTCCCGAATCTACTTTGCCCTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTgacgac                                                                                                                               <  1:263721/140‑1 (MQ=255)         tGATAATTCCCGAATCTACTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCg                                                                                                                           >  2:313881/1‑140 (MQ=255)            tAATTCCCGAATCTACTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTgg                                                                                                                        <  1:168509/140‑1 (MQ=255)             aaTTCCCGAATCTACTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATACAGCGGAAAGCTTCGCCCATTCCGAGGAAAGTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTggg                                                                                                                       <  2:1251894/140‑1 (MQ=255)               ttCCCGAATCTACTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGaa                                                                                                                     <  1:849502/140‑1 (MQ=255)                     aaTCTACTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGaa                                                                                                                     >  2:1257508/1‑134 (MQ=255)                     aaTCTACTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGaa                                                                                                                     <  1:1257508/134‑1 (MQ=255)                     aaTCTACTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTcc                                                                                                               >  1:264310/1‑140 (MQ=255)                     aaTCTACTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTcc                                                                                                               >  2:322988/1‑140 (MQ=255)                          aCTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAAc                                                                                                          <  1:322988/140‑1 (MQ=255)                          aCTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAAc                                                                                                          >  1:387398/1‑140 (MQ=255)                               gCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCcca                                                                                                     <  2:1256637/140‑1 (MQ=255)                                 cTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCccacc                                                                                                   <  2:617203/140‑1 (MQ=255)                                     aCTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATg                                                                                               >  1:1238993/1‑140 (MQ=255)                                          agaCATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAatat                                                                                          >  2:84747/1‑140 (MQ=255)                                          agaCATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAatat                                                                                          >  2:984145/1‑140 (MQ=255)                                             cATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCt                                                                                       <  1:84747/140‑1 (MQ=255)                                              aTTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCtt                                                                                      <  1:848598/140‑1 (MQ=255)                                              aTTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCtt                                                                                      <  1:1069786/140‑1 (MQ=255)                                              aTTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCtt                                                                                      <  1:933152/140‑1 (MQ=255)                                              aTTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCtt                                                                                      <  1:40691/140‑1 (MQ=255)                                              aTTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCtt                                                                                      <  2:387398/140‑1 (MQ=255)                                              aTTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCtt                                                                                      <  1:1235816/140‑1 (MQ=255)                                                tAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCtt                                                                                      <  1:799346/138‑1 (MQ=255)                                                tAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCtt                                                                                      >  2:799346/1‑138 (MQ=255)                                                        ccGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAAt                                                                            >  2:389593/1‑140 (MQ=255)                                                        ccGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAAt                                                                            >  1:212354/1‑140 (MQ=255)                                                         cGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGtta                                                                                 <  2:1104686/134‑1 (MQ=255)                                                         cGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGtta                                                                                 >  1:1104686/1‑134 (MQ=255)                                                            cGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGt                                                                        <  2:212354/140‑1 (MQ=255)                                                             gCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTc                                                                       >  2:558425/1‑140 (MQ=255)                                                               cAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCa                                                                     <  1:347362/140‑1 (MQ=255)                                                                     cACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTg                                                               <  1:984145/140‑1 (MQ=255)                                                                      aCCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTgg                                                              <  1:1132349/140‑1 (MQ=255)                                                                      aCCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTgg                                                              <  1:364784/140‑1 (MQ=255)                                                                       ccGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGa                                                             <  2:264310/140‑1 (MQ=255)                                                                            atagatatagCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAatat                                                        <  2:1238993/140‑1 (MQ=255)                                                                                atatagCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGAc                                                    <  1:558425/140‑1 (MQ=255)                                                                                  atagCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACtg                                                  >  2:486046/1‑140 (MQ=255)                                                                                  atagCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACtg                                                  >  1:788542/1‑140 (MQ=255)                                                                                    agCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCattat                                                                 >  2:404773/1‑123 (MQ=255)                                                                                    agCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCattat                                                                 <  1:404773/123‑1 (MQ=255)                                                                                    agCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGAc                                                    >  1:901706/1‑136 (MQ=255)                                                                                    agCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGAc                                                    <  2:901706/136‑1 (MQ=255)                                                                                    agCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACtgtg                                                >  1:14686/1‑140 (MQ=255)                                                                                    agCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACtgtg                                                >  2:298276/1‑140 (MQ=255)                                                                                    agCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACtgtg                                                >  1:621293/1‑140 (MQ=255)                                                                                     gCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGc                                               >  1:277558/1‑140 (MQ=255)                                                                                     gCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGc                                               >  2:50656/1‑140 (MQ=255)                                                                                      cGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAatat                                                        >  1:610069/1‑130 (MQ=255)                                                                                      cGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAatat                                                        <  2:610069/130‑1 (MQ=255)                                                                                      cGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGcc                                              >  1:289963/1‑140 (MQ=255)                                                                                        gAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCAt                                            <  1:597631/140‑1 (MQ=255)                                                                                        gAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCAt                                            >  1:652681/1‑140 (MQ=255)                                                                                         aaaGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCAtt                                           >  2:545271/1‑140 (MQ=255)                                                                                           aGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTAc                                         >  2:50967/1‑140 (MQ=255)                                                                                               tCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGaa                                     <  2:1052384/140‑1 (MQ=255)                                                                                                   ccGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAatat                                 <  1:545271/140‑1 (MQ=255)                                                                                                   ccGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAatat                                 <  1:50967/140‑1 (MQ=255)                                                                                                   ccGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAatat                                 <  1:313881/140‑1 (MQ=255)                                                                                                     gTTCCGAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATcc                               <  2:621293/140‑1 (MQ=255)                                                                                                          gAGGAAATTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATtat                          <  1:1099542/140‑1 (MQ=255)                                                                                                              aaaTTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATagag                      <  1:389593/140‑1 (MQ=255)                                                                                                              aaaTTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATagag                      <  1:969334/140‑1 (MQ=255)                                                                                                               aaTTCCAATGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGt                     <  2:788542/140‑1 (MQ=255)                                                                                                                       tGCCCTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTAc             <  2:289963/140‑1 (MQ=255)                                                                                                                           cTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGtg         <  2:652681/140‑1 (MQ=255)                                                                                                                           cTTTATCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGtg         >  2:304006/1‑140 (MQ=255)                                                                                                                               aTCGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGtgatga     <  2:1029917/140‑1 (MQ=255)                                                                                                                                 cGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACa   <  1:298276/140‑1 (MQ=255)                                                                                                                                 cGGTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACa   <  2:164099/140‑1 (MQ=255)                                                                                                                                  ggTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACag  <  1:486046/140‑1 (MQ=255)                                                                                                                                   gTCGCGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGt               <  1:790218/126‑1 (MQ=255)                                                                                                                                      |                                                                                                                                        CCCCGCAGTGATAATTCCCGAATCTACTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAG  >  NC_000913/1596962‑1597230

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑