Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,705,838	T→C	G24G (GGT→GGC)	rsxA →	SoxR [2Fe‑2S] reducing system protein RsxA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,705,838	0	T	C	100.0%	148.8 / NA	43	G24G (GGT→GGC)	rsxA	SoxR [2Fe‑2S] reducing system protein RsxA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (22/21);  total (22/21)

AACCTGTTGTCGCCTGCTCTGGATTAACGGATAATAGGCGGCTTTTTTATTTCAGGCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGTCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGATACGTGGATTTTGATCCCACTTAATCTG  >  NC_000913/1705704‑1705973                                                                                                                                       |                                                                                                                                        aaCCTGTTGTCGCCTGCTCTGGATTAACGGATAATAGGCGGCTTTTTTATTTCAGGCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTg                                                                                                                                    >  1:256513/1‑140 (MQ=255)    cTGTTGTCGCCTGCTCTGGATTAACGGATAATAGGCGGCTTTTTTATTTCAGGCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTcc                                                                                                                                 <  2:223624/140‑1 (MQ=255)         gtCGCCTGCTCTGGATTAACGGATAATAGGCGGCTTTTTTATTTCAGGCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTa                                                                                                                            >  2:751158/1‑140 (MQ=255)                     ggATTAACGGATAATAGGCGGCTTTTTTATTTCAGGCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCa                                                                                                                <  2:707603/140‑1 (MQ=255)                                taataGGCGGCTTTTTTATTTCAGGCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGGACTGTACTGGTCAATAACTTTGTACTGATCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGaa                                                                                                     >  2:1125510/1‑140 (MQ=255)                                taataGGCGGCTTTTTTATTTCAGGCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGaa                                                                                                     >  1:763729/1‑140 (MQ=255)                                taataGGCGGCTTTTTTATTTCAGGCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGaa                                                                                                     >  1:145995/1‑140 (MQ=255)                                      gcggcTTTTTTATTTCAGGCCGAAAAATGACTGACTACCTGTCACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACcgcg                                                                                               <  2:1175612/140‑1 (MQ=255)                                       cggcTTTTTTATTTCAGGCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGa                                                                                              <  2:145995/140‑1 (MQ=255)                                        ggcTTTTTTATTTCAGGCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACcgcg                                                                                               <  1:326637/138‑1 (MQ=255)                                        ggcTTTTTTATTTCAGGCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACcgcg                                                                                               >  2:326637/1‑138 (MQ=255)                                         gcTTTTTTATTTCAGGCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATg                                                                                            <  1:602955/140‑1 (MQ=255)                                                   ttCAGGCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGc                                                                                  <  1:1046549/140‑1 (MQ=255)                                                    tCAGGCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCt                                                                                 >  2:133946/1‑140 (MQ=255)                                                        gCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGa                                                                                              >  2:243659/1‑123 (MQ=255)                                                        gCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGa                                                                                              <  1:243659/123‑1 (MQ=255)                                                        gCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATg                                                                                      <  1:606225/131‑1 (MQ=255)                                                        gCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATg                                                                                      >  2:606225/1‑131 (MQ=255)                                                        gCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGca                                                                             >  2:717066/1‑140 (MQ=255)                                                               aaTGACTGACTACCTGTTACTGTTTGTCGGAACTGTANNGNTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGt                                                                      <  1:956465/140‑1 (MQ=255)                                                                     tgactACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGtga                                                                <  1:133946/140‑1 (MQ=255)                                                                             tGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTg                                                        <  1:717066/140‑1 (MQ=255)                                                                                 aCTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGt                                                    <  1:1125510/140‑1 (MQ=255)                                                                                   tGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCt                                                  >  1:683306/1‑140 (MQ=255)                                                                                    gTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTa                                                 >  2:239825/1‑140 (MQ=255)                                                                                         tCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTgc                                            >  1:915754/1‑140 (MQ=255)                                                                                           ggAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTgcgc                                          <  2:763729/140‑1 (MQ=255)                                                                                           ggAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTgcgc                                          <  1:677836/140‑1 (MQ=255)                                                                                                   aCTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTa                                  <  2:915754/140‑1 (MQ=255)                                                                                                       gTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGa                              >  1:882430/1‑140 (MQ=255)                                                                                                       gTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGa                              >  1:692335/1‑140 (MQ=255)                                                                                                       gTCAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGa                              >  1:63072/1‑140 (MQ=255)                                                                                                         cAATAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGATa                            >  1:650413/1‑140 (MQ=255)                                                                                                            tAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTAt                                 <  1:136151/132‑1 (MQ=255)                                                                                                            tAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTAt                                 >  2:136151/1‑132 (MQ=255)                                                                                                            tAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGATACGt                         <  2:256513/140‑1 (MQ=255)                                                                                                            tAACTTTGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGATACGt                         <  2:692335/140‑1 (MQ=255)                                                                                                                  tGTACTGGTCAAGTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGATACGTGGAttt                   >  2:668954/1‑140 (MQ=255)                                                                                                                              gTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGATACGTGGATTTTGATCCCACTTa       >  2:551237/1‑140 (MQ=255)                                                                                                                              gTTTCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGATACGTGGATTTTGATCCCACTTa       >  2:1032369/1‑140 (MQ=255)                                                                                                                               tttCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGATACGTGGATTTTGATCCCACTTaa      <  1:551237/140‑1 (MQ=255)                                                                                                                               tttCTCGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGATACGTGGATTTTGATCCCACTTaa      <  1:1032369/140‑1 (MQ=255)                                                                                                                                   tcGGCCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGATACGTGGATTTTGATCCCACTTAATCTg  >  2:1153272/1‑140 (MQ=255)                                                                                                                                       |                                                                                                                                        AACCTGTTGTCGCCTGCTCTGGATTAACGGATAATAGGCGGCTTTTTTATTTCAGGCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGTCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGATACGTGGATTTTGATCCCACTTAATCTG  >  NC_000913/1705704‑1705973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑