Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,072,123	A→G	G195G (GGA→GGG)	flu →	CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,072,123	0	A	G	100.0%	233.0 / NA	68	G195G (GGA→GGG)	flu	CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (43/25);  total (43/25)

GCTGAATGGTGGCGAACAGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGACCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACC  >  NC_000913/2071988‑2072259                                                                                                                                        |                                                                                                                                         gCTGAATGGTGGCGAACAGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCgg                                                                                                                                      >  1:1152263/1‑140 (MQ=255)       tggtggCGAACAGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAg                                                                                                                                <  2:1065932/140‑1 (MQ=255)         gtggCGAACAGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGaa                                                                                                                              <  2:808312/140‑1 (MQ=255)           ggCGAACAGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGaaaa                                                                                                                            >  2:908793/1‑140 (MQ=255)                aCAGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTg                                                                                                                       <  2:639944/140‑1 (MQ=255)                  aGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGAt                                                                                                                     <  2:743574/140‑1 (MQ=255)                    tGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATAc                                                                                                                   <  1:906968/140‑1 (MQ=255)                    tGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATAc                                                                                                                   >  2:792565/1‑140 (MQ=255)                    tGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATAc                                                                                                                   >  2:906968/1‑140 (MQ=255)                              aGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGttt                                                                                                         >  1:306715/1‑140 (MQ=255)                              aGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGttt                                                                                                         >  1:116889/1‑140 (MQ=255)                                  ggCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTc                                                                                                     >  2:403597/1‑140 (MQ=255)                                        aGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCgggg                                                                                               <  1:1005827/140‑1 (MQ=255)                                                    cGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGca                                                                                   >  2:671072/1‑140 (MQ=255)                                                    cGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGca                                                                                   >  2:421653/1‑140 (MQ=255)                                                     gTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGcac                                                                                  >  2:852838/1‑140 (MQ=255)                                                      tCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGcaca                                                                                 >  1:329443/1‑140 (MQ=255)                                                         ttAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAAcc                                                                              <  2:532275/140‑1 (MQ=255)                                                           aaTGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCAt                                                                            >  2:36268/1‑140 (MQ=255)                                                            aTGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATc                                                                           <  2:719624/140‑1 (MQ=255)                                                                tAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAAcc                                                                              <  1:161823/133‑1 (MQ=255)                                                                tAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAAcc                                                                              >  2:161823/1‑133 (MQ=255)                                                                   gggCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATaaaa                                                                    >  1:177636/1‑140 (MQ=255)                                                                    ggCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGca                                                                                   <  2:1192593/124‑1 (MQ=255)                                                                    ggCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGca                                                                                   >  1:1192593/1‑124 (MQ=255)                                                                    ggCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATaaaaa                                                                   >  1:526768/1‑140 (MQ=255)                                                                        ggCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCTTATGCACAACCATCAATAAAAACGGt                                                               >  1:616598/1‑140 (MQ=255)                                                                        ggCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGt                                                               >  2:912270/1‑140 (MQ=255)                                                                         gCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTc                                                              >  1:254349/1‑140 (MQ=255)                                                                         gCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTc                                                              >  2:209409/1‑140 (MQ=255)                                                                              tcgtcAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGTGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGGGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAg                                                         >  2:1177107/1‑140 (MQ=255)                                                                              tcgtcAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAg                                                         >  1:484504/1‑140 (MQ=255)                                                                               cgtcAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGa                                                        <  1:908793/140‑1 (MQ=255)                                                                               cgtcAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGa                                                        >  2:197787/1‑140 (MQ=255)                                                                                     gCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTga                                                  <  1:671072/140‑1 (MQ=255)                                                                                     gCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTga                                                  >  2:86431/1‑140 (MQ=255)                                                                                       ccGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTgaga                                                >  2:744311/1‑140 (MQ=255)                                                                                        cGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGagag                                               >  1:1257762/1‑140 (MQ=255)                                                                                          gTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCt                                             >  1:405816/1‑140 (MQ=255)                                                                                           tACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCa                                                          <  1:744597/126‑1 (MQ=255)                                                                                           tACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCa                                                          >  2:744597/1‑126 (MQ=255)                                                                                                tGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGa                                       >  1:730620/1‑140 (MQ=255)                                                                                                 ggCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGaa                                      <  2:486457/140‑1 (MQ=255)                                                                                                   cAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACg                                    <  1:384359/140‑1 (MQ=255)                                                                                                   cAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACg                                    >  2:384359/1‑140 (MQ=255)                                                                                                     aCGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGc                                  >  1:927520/1‑140 (MQ=255)                                                                                                     aCGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGc                                  <  2:582320/140‑1 (MQ=255)                                                                                                      cGGATACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCa                                 <  2:1257762/140‑1 (MQ=255)                                                                                                          tACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCt                                             >  1:1187253/1‑124 (MQ=255)                                                                                                          tACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCt                                             <  2:1187253/124‑1 (MQ=255)                                                                                                          tACCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATa                             <  1:421653/140‑1 (MQ=255)                                                                                                           aCCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATAc                            <  2:578098/140‑1 (MQ=255)                                                                                                           aCCGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATAc                            <  1:1177107/140‑1 (MQ=255)                                                                                                            ccGTTGTTAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATAcc                           >  1:987206/1‑140 (MQ=255)                                                                                                                  ttAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACtgtg                     >  2:457087/1‑140 (MQ=255)                                                                                                                  ttAATACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACtgtg                     >  2:645225/1‑140 (MQ=255)                                                                                                                     aTACCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGtt                  >  2:1029696/1‑140 (MQ=255)                                                                                                                       aCCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTa                >  1:1131330/1‑140 (MQ=255)                                                                                                                       aCCGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTa                >  1:1671/1‑140 (MQ=255)                                                                                                                         cGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATg              >  2:62056/1‑140 (MQ=255)                                                                                                                         cGGGGCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATg              >  1:771797/1‑140 (MQ=255)                                                                                                                           gggCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGcc            >  1:354630/1‑140 (MQ=255)                                                                                                                            ggCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCcg           >  2:828970/1‑140 (MQ=255)                                                                                                                            ggCGGAAGGGGGGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCcg           >  2:942125/1‑140 (MQ=255)                                                                                                                                   ggggggCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGa    <  2:783108/140‑1 (MQ=255)                                                                                                                                   ggggggCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGa    <  1:852838/140‑1 (MQ=255)                                                                                                                                   ggggggCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGa    <  1:36268/140‑1 (MQ=255)                                                                                                                                    ggggGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCTTATGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGAc   <  2:616598/140‑1 (MQ=255)                                                                                                                                    ggggGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGAc   <  1:209409/140‑1 (MQ=255)                                                                                                                                    ggggGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGAc   <  1:1183412/140‑1 (MQ=255)                                                                                                                                    ggggGCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGAc   <  2:987206/140‑1 (MQ=255)                                                                                                                                     ggggCCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACATCCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATGCCACTGTGGTTTATGCTGGCGGCGAcc  <  2:927520/140‑1 (MQ=255)                                                                                                                                        |                                                                                                                                         GCTGAATGGTGGCGAACAGTGGATGCATGAGGGGGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACGGATACCGTTGTTAATACCGGGGCGGAAGGGGGACCGGATGCAGAAAACGGTGATACCGGGCAGTTTGTTCGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACC  >  NC_000913/2071988‑2072259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑