Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,925,575 T→C G76G (GGT→GGC queF → 7‑cyano‑7‑deazaguanine reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,925,5750TC100.0% 223.1 / NA 61G76G (GGT→GGCqueF7‑cyano‑7‑deazaguanine reductase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (30/31);  total (30/31)

AGGCGTTCCACGCAGCCTGAATCGCGACCCGCTGGGTCTGAAAGCGGATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGTCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTTAATAACTGGGATGAGGTGCGCCAGACGCTGGAGCGCGACTTAAGCACT  >  NC_000913/2925440‑2925710
                                                                                                                                       |                                                                                                                                       
aGGCGTTCCACGCAGCCTGAATCGCGACCCGCTGGGTCTGAAAGCGGATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATg                                                                                                                                     <  1:46060/140‑1 (MQ=255)
aGGCGTTCCACGCAGCCTGAATCGCGACCCGCTGGGTCTGAAAGCGGATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATg                                                                                                                                     >  2:155377/1‑140 (MQ=255)
     ttCCACGCAGCCTGAATCGCGACCCGCTGGGTCTGAAAGCGGATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGaa                                                                                                                                <  1:967276/140‑1 (MQ=255)
      tCCACGCAGCCTGAATCGCGACCCGCTGGGTCTGAAAGCGGATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAAc                                                                                                                               <  1:691360/140‑1 (MQ=255)
           gCAGCCTGAATCGCGACCCGCTGGGTCTGAAAGCGGATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGAt                                                                                                                          <  2:153167/140‑1 (MQ=255)
                cTGAATCGCGACCCGCTGGGTCTGAAAGCGGATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTacac                                                                                                                     <  2:685336/140‑1 (MQ=255)
                     tCGCGACCCGCTGGGTCTGAAAGCGGATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCg                                                                                                                <  1:31379/140‑1 (MQ=255)
                         gACCCGCTGGGTCTGAAAGCGGATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCg                                                                                                                >  2:163718/1‑136 (MQ=255)
                         gACCCGCTGGGTCTGAAAGCGGATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCg                                                                                                                <  1:163718/136‑1 (MQ=255)
                         gACCCGCTGGGTCTGAAAGCGGATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTaaa                                                                                                            >  1:515676/1‑140 (MQ=255)
                                tGGGTCTGAAAGCGGATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGAtt                                                                                                     <  2:955526/140‑1 (MQ=255)
                                     cTGAAAGCGGATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTc                                                                                                >  1:143937/1‑140 (MQ=255)
                                        aaaGCGGATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGaa                                                                                             <  1:796908/140‑1 (MQ=255)
                                        aaaGCGGATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGaa                                                                                             <  1:1150579/140‑1 (MQ=255)
                                        aaaGCGGATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGaa                                                                                             >  1:277305/1‑140 (MQ=255)
                                            cGGATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGt                                                                                         >  1:266181/1‑140 (MQ=255)
                                            cGGATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGt                                                                                         >  2:603399/1‑140 (MQ=255)
                                            cGGATAACCTGCCTTTTAACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGATTGCGAAAGGTTTGCCGCAGGTCGCTGCCGGCCATGTTGAACTTGATTAAACCACCGTAAATCTGATTGAGTGGAAGGGt                                                                                         >  2:766875/1‑140 (MQ=255)
                                             ggATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGtt                                                                                        >  2:1058301/1‑140 (MQ=255)
                                              gATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGttt                                                                                       >  2:1248564/1‑140 (MQ=255)
                                               aTAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGtttt                                                                                      <  2:277305/140‑1 (MQ=255)
                                               aTAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGtttt                                                                                      <  2:1086002/140‑1 (MQ=255)
                                                        cTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTAt                                                                             <  1:1248564/140‑1 (MQ=255)
                                                            tCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCa                                                                         >  2:568161/1‑140 (MQ=255)
                                                             cACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGc                                                                                  <  2:88273/130‑1 (MQ=255)
                                                             cACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGc                                                                                  >  1:88273/1‑130 (MQ=255)
                                                             cACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCaa                                                                        >  1:272569/1‑140 (MQ=255)
                                                             cACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCaa                                                                        <  2:901785/140‑1 (MQ=255)
                                                                 gTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGc                                                                                  >  1:1215861/1‑126 (MQ=255)
                                                                 gTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGt                                                                    >  2:191725/1‑140 (MQ=255)
                                                                 gTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTCGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGc                                                                                  <  2:1215861/126‑1 (MQ=255)
                                                                      gATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTaa                                                               <  2:858979/140‑1 (MQ=255)
                                                                          tCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAg                                                           <  1:568161/140‑1 (MQ=255)
                                                                          tCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAg                                                           >  1:403283/1‑140 (MQ=255)
                                                                           cTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGa                                                          <  2:1056348/140‑1 (MQ=255)
                                                                           cTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGa                                                          <  2:193395/140‑1 (MQ=255)
                                                                            tGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGAc                                                         >  2:1070411/1‑140 (MQ=255)
                                                                            tGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGAc                                                         >  2:1055414/1‑140 (MQ=255)
                                                                              gACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGAcgc                                                       <  1:603399/140‑1 (MQ=255)
                                                                                   tGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGtttt                                                  <  2:266181/140‑1 (MQ=255)
                                                                                     tATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTtaa                                                >  1:1034749/1‑140 (MQ=255)
                                                                                             ttCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTTAATAACTggg                                        <  1:766875/140‑1 (MQ=255)
                                                                                             ttCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTTAATAACTggg                                        >  1:1294977/1‑140 (MQ=255)
                                                                                               ccTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGtt                                                    <  2:699775/126‑1 (MQ=255)
                                                                                               ccTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGtt                                                    >  1:699775/1‑126 (MQ=255)
                                                                                               ccTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTtaataa                                             >  2:644061/1‑133 (MQ=255)
                                                                                               ccTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTtaataa                                             <  1:644061/133‑1 (MQ=255)
                                                                                               ccTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTTAATAACTGGGAt                                      >  2:966134/1‑140 (MQ=255)
                                                                                               ccTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTTAATAACTGGGAt                                      >  2:1346716/1‑140 (MQ=255)
                                                                                               ccTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTTAATAACTGGGAt                                      >  1:1149590/1‑140 (MQ=255)
                                                                                               ccTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTTAATAACTGGGAt                                      >  1:1135839/1‑140 (MQ=255)
                                                                                                   gCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTTAATAACTGGGATGAgg                                  <  2:548037/140‑1 (MQ=255)
                                                                                                       aaTGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTTAATAACTGGGATg                                     >  2:147986/1‑133 (MQ=255)
                                                                                                       aaTGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTTAATAACTGGGATg                                     <  1:147986/133‑1 (MQ=255)
                                                                                                         tGCGAAAGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTTAATAACTGGGATGAGGTGCGcc                            <  1:191725/140‑1 (MQ=255)
                                                                                                             aaaGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTTAATAACTGGGATGAgg                                  <  2:529991/130‑1 (MQ=255)
                                                                                                             aaaGGTTTGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTTAATAACTGGGATGAgg                                  >  1:529991/1‑130 (MQ=255)
                                                                                                                 gTTTGCCGCAGGTAGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTTAATAACTGGGATGAGGTGCGCCAGACGCTg                    >  2:233730/1‑140 (MQ=255)
                                                                                                                    tGCCGCAGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTTAATAACTGGGATGAGGTGCGCCAGACGCTGGAg                 <  1:966134/140‑1 (MQ=255)
                                                                                                                          aGGTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTTAATAACTGGGATGAGGTGCGCCAGACGCTGGAGCGCGAc           >  2:1179725/1‑140 (MQ=255)
                                                                                                                           ggTCGCTGTCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTTAATAACTGGGATGAGGTGCGCCAGACGCTGGAGCGCGACt          >  2:1154921/1‑140 (MQ=255)
                                                                                                                                   tCGGCCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTTAATAACTGGGATGAGGTGCGCCAGACGCTGGAGCGCGACTTAAGCACt  <  1:1154921/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                       
AGGCGTTCCACGCAGCCTGAATCGCGACCCGCTGGGTCTGAAAGCGGATAACCTGCCTTTTCACGGTACGGATATCTGGACGCTGTATGAACTTTCCTGGCTGAATGCGAAAGGTTTGCCGCAGGTCGCTGTCGGTCATGTTGAACTTGATTACACCAGCGTAAATCTGATTGAGTCGAAGAGTTTTAAGCTCTATCTCAACAGTTTTAACCAGACGCGTTTTAATAACTGGGATGAGGTGCGCCAGACGCTGGAGCGCGACTTAAGCACT  >  NC_000913/2925440‑2925710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: