Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 3,234,758 | T→C | K373R (AAG→AGG) | rlmG ← | 23S rRNA m(2)G1835 methyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,234,758 | 0 | T | C | 98.2% | 197.6 / ‑4.5 | 56 | K373R (AAG→AGG) | rlmG | 23S rRNA m(2)G1835 methyltransferase |
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (21/34); total (21/35) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
GAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTGGCAACGATATACAGCTCGCCGTTGATTTTCAGGCAGCG > NC_000913/3234622‑3234894 | gAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCa > 2:1172026/1‑140 (MQ=255) gAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCa < 1:80241/140‑1 (MQ=255) gAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCa < 2:148053/140‑1 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCAcc < 1:1323054/140‑1 (MQ=255) ggCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTGTCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCAcc < 2:300279/136‑1 (MQ=255) ggCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTGTCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCAcc > 1:300279/1‑136 (MQ=255) ggCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCtt > 2:89925/1‑140 (MQ=255) ggCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCtt > 2:629720/1‑140 (MQ=255) ggCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCt > 2:420366/1‑139 (MQ=255) ggCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCt < 1:420366/139‑1 (MQ=255) cAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCttt > 1:25371/1‑139 (MQ=255) cAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCttt < 2:25371/139‑1 (MQ=255) aCATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGCCCCAGCCTCACCGCTTTCAGt > 1:458034/1‑140 (MQ=255) tGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACca < 2:310179/140‑1 (MQ=255) aCGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATttatta < 1:1363330/140‑1 (MQ=255) cgTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCaa < 1:89925/140‑1 (MQ=255) cgTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCaa < 1:548291/140‑1 (MQ=255) aTCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAgtgg > 1:1240195/1‑140 (MQ=255) aTCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCACTTTCAGTACCACAAATTTATTATTCGTCGCAATAgtgg > 2:577824/1‑140 (MQ=255) ccTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGt > 1:497222/1‑140 (MQ=255) ggAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGc < 2:43218/140‑1 (MQ=255) aGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCg < 1:1301194/140‑1 (MQ=255) gTAACGTGCTGAACGTCGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGa < 2:1224573/140‑1 (MQ=255) aCGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGaaaa > 2:454741/1‑140 (MQ=255) cGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAAt > 1:271291/1‑140 (MQ=255) cTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAAtcttc > 1:412950/1‑140 (MQ=255) cTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAAtcttc > 2:568762/1‑140 (MQ=255) tGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAAtcttct > 1:319940/1‑140 (MQ=255) gAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATcttctt < 2:666364/140‑1 (MQ=255) gAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCACTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATcttctt < 1:577824/140‑1 (MQ=255) aCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCa < 1:1172026/140‑1 (MQ=255) aGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGttt > 1:1028461/1‑140 (MQ=255) ggCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTa < 2:205757/140‑1 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGCCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTAt < 2:458034/140‑1 (MQ=255) ggATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGa > 1:244948/1‑140 (MQ=255) ggCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAAt > 1:378213/1‑140 (MQ=255) gCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTAt < 1:39245/130‑1 (MQ=255) gCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTAt > 2:39245/1‑130 (MQ=255) gCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATc < 1:872081/140‑1 (MQ=255) tACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGt > 2:166084/1‑140 (MQ=255) aTCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTg > 1:7810/1‑140 (MQ=255) tCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTgg < 1:1208197/140‑1 (MQ=255) tCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTgg < 2:319940/140‑1 (MQ=255) tCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTgg < 1:412547/140‑1 (MQ=255) tCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTgg < 2:378213/140‑1 (MQ=255) tCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTgg < 1:568762/140‑1 (MQ=255) tCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTgg < 2:244948/140‑1 (MQ=255) tCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTgg < 2:1028461/140‑1 (MQ=255) cGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTGGCa < 1:454741/140‑1 (MQ=255) cAGGTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTGGCAACg < 1:166084/140‑1 (MQ=255) gTAACTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTGGCAACGata < 1:629720/140‑1 (MQ=255) cTCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTGGCAACGATATACa < 2:271291/140‑1 (MQ=255) tCCCAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTGGCAACGATATACAg < 2:7810/140‑1 (MQ=255) ccAATCTTACCGACGACGTCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTGGCAACGATATACAGCt < 2:112634/140‑1 (MQ=255) tCCCAGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTGGCAACGATATACAGCTCGCCGTTGATTTTCAGGc < 1:1358357/140‑1 (MQ=255) aGCCTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTGGCAACGATATACAGCTCGCCGTTGATTTTCAGGCAgcg < 2:219555/140‑1 (MQ=255) | GAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTGGCAACGATATACAGCTCGCCGTTGATTTTCAGGCAGCG > NC_000913/3234622‑3234894 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |