BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,633,068	T→C	pseudogene (1391/1607 nt)	yhiL ←	putative uncharacterized protein YhiL

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,633,068	0	T	C	100.0%	400.2 / NA	108	pseudogene (1391/1607 nt)	yhiL	putative uncharacterized protein YhiL
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (51/57); total (51/57)

Only 100 of 108 total aligned reads displayed.

AGCCCCATAATACCA‑TTATCAAATTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTGGCTAATTCC  >  NC_000913/3632931‑3633200

taccccCTAATTCCATTTATAAAATTG‑TGATTTTGATTCTCCCCGGGGCCATGGAGCCCCATATTTTTGTTTAAGGTTTTTG‑TTGGGTTTTCCCCCTTTAGTGTTCTCCCACATATGAAGATACGTTCACGTGCTGGCCt                                                                                                                                    <  2:451347/138‑1 (MQ=255)

  ccccATAATACCA‑TTATCAAATTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGa                                                                                                                                  <  1:376783/140‑1 (MQ=255)

   cccATAATACCA‑TTATCAAATTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGaa                                                                                                                                 >  2:916378/1‑140 (MQ=255)

     cATAATACCA‑TTATCAAATTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAAt                                                                                                                               >  1:972637/1‑140 (MQ=255)

       taataCCA‑TTATCAAATTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCa                                                                                                                             >  1:995529/1‑140 (MQ=255)

       taataCCA‑TTATCAAATTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCa                                                                                                                             <  2:1326899/140‑1 (MQ=255)

        aataCCA‑TTATCAAATTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCag                                                                                                                            <  1:106780/140‑1 (MQ=255)

        aataCCA‑TTATCAAATTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCag                                                                                                                            <  1:490918/140‑1 (MQ=255)

          taCCA‑TTATCAAATTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCagta                                                                                                                          <  1:310916/140‑1 (MQ=255)

          taCCA‑TTATCAAATTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCagta                                                                                                                          <  2:377833/140‑1 (MQ=255)

            ccA‑TTATCAAATTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCt                                                                                                                                    >  1:556806/1‑128 (MQ=255)

              a‑TTATCAAATTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAgtgt                                                                                                                      >  1:338538/1‑140 (MQ=255)

              a‑TTATCAAATTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAgtgt                                                                                                                      >  1:1274370/1‑140 (MQ=255)

                ttATCAAATTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGtt                                                                                                                     >  2:1115454/1‑140 (MQ=255)

                   tCAAATTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATc                                                                                                                  >  1:1307607/1‑140 (MQ=255)

                     aaaTTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCaa                                                                                                                >  1:405549/1‑140 (MQ=255)

                      aaTTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCaaa                                                                                                               >  1:1057411/1‑140 (MQ=255)

                       aTTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCaaaa                                                                                                              >  1:1058691/1‑140 (MQ=255)

                       aTTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCaaaa                                                                                                              >  2:282273/1‑140 (MQ=255)

                        ttgttgATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAaat                                                                                                             >  1:329703/1‑140 (MQ=255)

                          gttgATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAaataa                                                                                                           <  1:1115454/140‑1 (MQ=255)

                          gttgATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAaataa                                                                                                           <  2:1307607/140‑1 (MQ=255)

                          gttgATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAaataa                                                                                                           <  1:152000/140‑1 (MQ=255)

                          gttgATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAaataa                                                                                                           <  1:1167642/140‑1 (MQ=255)

                          gttgATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAaataa                                                                                                           <  2:972637/140‑1 (MQ=255)

                          gttgATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAaataa                                                                                                           <  2:1058461/140‑1 (MQ=255)

                          gttgATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAaataa                                                                                                           <  2:405549/140‑1 (MQ=255)

                          gttgATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAaataa                                                                                                           <  2:1274370/140‑1 (MQ=255)

                          gttgATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAaataa                                                                                                           <  1:1129133/140‑1 (MQ=255)

                           ttgATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAaataat                                                                                                          <  1:25079/140‑1 (MQ=255)

                           ttgATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAaataa                                                                                                           >  1:1074669/1‑139 (MQ=255)

                           ttgATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAaataa                                                                                                           <  2:1074669/139‑1 (MQ=255)

                             gATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTa                                                                                                        <  2:329703/140‑1 (MQ=255)

                             gATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTa                                                                                                        <  2:338538/140‑1 (MQ=255)

                             gATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTa                                                                                                        <  2:219420/140‑1 (MQ=255)

                             gATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTa                                                                                                        <  1:537420/140‑1 (MQ=255)

                             gATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTa                                                                                                        <  1:916378/140‑1 (MQ=255)

                             gATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTa                                                                                                        <  1:112632/140‑1 (MQ=255)

                               ttATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGc                                                                                                      <  2:218770/140‑1 (MQ=255)

                               ttATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGc                                                                                                      <  1:1036136/140‑1 (MQ=255)

                                        aCCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAaataat                                                                                                          <  2:1131960/127‑1 (MQ=255)

                                        aCCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAaataat                                                                                                          >  1:1131960/1‑127 (MQ=255)

                                        aCCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAgg                                                                                             >  2:827804/1‑140 (MQ=255)

                                        aCCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAgg                                                                                             >  2:1061080/1‑140 (MQ=255)

                                         ccccGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAaataa                                                                                                           <  1:852547/125‑1 (MQ=255)

                                         ccccGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAaataa                                                                                                           >  2:852547/1‑125 (MQ=255)

                                          cccGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTa                                                                                                        >  1:759830/1‑127 (MQ=255)

                                          cccGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTa                                                                                                        <  2:759830/127‑1 (MQ=255)

                                           ccGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGgtgt                                                                                          <  1:827804/140‑1 (MQ=255)

                                           ccGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGgtgt                                                                                          <  1:506348/140‑1 (MQ=255)

                                             gggCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTgg                                                                                        >  1:544737/1‑140 (MQ=255)

                                              ggCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGgtg                                                                                           <  2:975826/136‑1 (MQ=255)

                                              ggCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGgtg                                                                                           >  1:975826/1‑136 (MQ=255)

                                              ggCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTggg                                                                                       >  2:883378/1‑140 (MQ=255)

                                                    t‑gatgCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCaa                                                                                 >  1:1136653/1‑140 (MQ=255)

                                                          cccATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTAt                                                                            >  1:470973/1‑140 (MQ=255)

                                                          cccATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTAt                                                                            >  2:447596/1‑140 (MQ=255)

                                                          cccATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTAt                                                                            >  1:549854/1‑140 (MQ=255)

                                                          cccATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTAt                                                                            <  1:803325/140‑1 (MQ=255)

                                                              tatTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCt                                                                        <  2:1136653/140‑1 (MQ=255)

                                                                   ttGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGa                                                                   <  1:282273/140‑1 (MQ=255)

                                                                        tAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGa                                                              <  1:874836/140‑1 (MQ=255)

                                                                         aaTGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGAt                                                             >  2:923538/1‑140 (MQ=255)

                                                                         aaTGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGAt                                                             >  2:1164177/1‑140 (MQ=255)

                                                                          aTGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATg                                                            <  1:883378/140‑1 (MQ=255)

                                                                           tGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATgg                                                           >  2:690697/1‑140 (MQ=255)

                                                                               tttGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATa                                                       <  2:665362/140‑1 (MQ=255)

                                                                                ttGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGa                                                              >  2:919497/1‑132 (MQ=255)

                                                                                ttGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATag                                                      <  2:1058691/140‑1 (MQ=255)

                                                                                  gCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATagag                                                    >  2:1276479/1‑140 (MQ=255)

                                                                                  gCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATagag                                                    <  1:447596/140‑1 (MQ=255)

                                                                                    tGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGa                                                  <  1:1164177/140‑1 (MQ=255)

                                                                                     ggggTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGat                                                 <  1:205826/140‑1 (MQ=255)

                                                                                      gggTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGatc                                                >  2:442774/1‑140 (MQ=255)

                                                                                       ggTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGatca                                               >  1:78829/1‑140 (MQ=255)

                                                                                       ggTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGatca                                               >  2:162916/1‑140 (MQ=255)

                                                                                       ggTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGatca                                               <  2:470973/140‑1 (MQ=255)

                                                                                       ggTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGa                                                  <  1:873731/137‑1 (MQ=255)

                                                                                       ggTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGa                                                  >  2:873731/1‑137 (MQ=255)

                                                                                          cTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATcc                                            <  2:1057411/140‑1 (MQ=255)

                                                                                             cACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCAtg                                         >  1:975952/1‑140 (MQ=255)

                                                                                                  ttGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTTTCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTc                                    >  1:312628/1‑140 (MQ=255)

                                                                                                   tGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTTTCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCt                                   <  2:312628/140‑1 (MQ=255)

                                                                                                   tGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTc                                    <  2:1327428/139‑1 (MQ=255)

                                                                                                   tGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTc                                    >  1:1327428/1‑139 (MQ=255)

                                                                                                                     tGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTaaaa                 >  1:70485/1‑140 (MQ=255)

                                                                                                                     tGAAGATACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTaaaa                 <  1:175102/140‑1 (MQ=255)

                                                                                                                           tACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTg           <  2:549854/140‑1 (MQ=255)

                                                                                                                           tACGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTg           >  2:1016259/1‑140 (MQ=255)

                                                                                                                            aCGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTgg          >  2:79545/1‑140 (MQ=255)

                                                                                                                            aCGTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTgg          >  1:492013/1‑140 (MQ=255)

                                                                                                                              gTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTGGCt        >  1:42446/1‑140 (MQ=255)

                                                                                                                              gTTCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTGGCt        >  2:714355/1‑140 (MQ=255)

                                                                                                                                tCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTGGCTaa      <  1:406710/140‑1 (MQ=255)

                                                                                                                                tCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTGGCTaa      >  1:531758/1‑140 (MQ=255)

                                                                                                                                tCACGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGAATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTGGCTaa      <  1:909037/140‑1 (MQ=255)

                                                                                                                                  aCGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTGGCTAAtt    >  2:818254/1‑140 (MQ=255)

                                                                                                                                   cGTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTGGCTAATTc   >  2:1037939/1‑140 (MQ=255)

                                                                                                                                    gTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTGGCTAATTcc  <  1:923538/140‑1 (MQ=255)

                                                                                                                                    gTGCTGGCCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTGGCTAATTcc  >  1:497984/1‑140 (MQ=255)

AGCCCCATAATACCA‑TTATCAAATTGTTGATTATGATCTACCCCGGGCCCAT‑GATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTGGCTAATTCC  >  NC_000913/3632931‑3633200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`