Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,805,061	T→C	Y19C (TAC→TGC)	waaS ←	lipopolysaccharide core biosynthesis protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,805,061	0	T	C	100.0%	344.9 / NA	94	Y19C (TAC→TGC)	waaS	lipopolysaccharide core biosynthesis protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (38/56);  total (38/56)

TATCATTGAGGTAATGCTTGATGAATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGTACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAATCCTTTGCGTTGTGTTCGCTCTTTAATACGCTCGGCCT  >  NC_000913/3804927‑3805196                                                                                                                                        |                                                                                                                                        tatCATTGAGGTAATGCTTGATGAATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGa                                                                                                                                    >  2:118030/1‑140 (MQ=255)           gTAATGCTTGATGAATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTa                                                                                                                          >  2:794753/1‑140 (MQ=255)              aTGCTTGATGAATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTACTTTTTTTTTCAGGCACTGAATCATTTTTAAt                                                                                                                        >  1:317458/1‑140 (MQ=255)              aTGCTTGATGAATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCAttttt                                                                                                                           >  1:80330/1‑136 (MQ=255)              aTGCTTGATGAATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCAttttt                                                                                                                           <  2:80330/136‑1 (MQ=255)              aTGCTTGATGAATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAAtt                                                                                                                       >  2:781121/1‑140 (MQ=255)              aTGCTTGATGAATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAAtt                                                                                                                       >  2:417925/1‑140 (MQ=255)               tGCTTGATGAATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTc                                                                                                                      >  1:1023019/1‑140 (MQ=255)               tGCTTGATGAATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTc                                                                                                                      >  1:367288/1‑140 (MQ=255)               tGCTTGATGAATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTc                                                                                                                      >  2:663770/1‑140 (MQ=255)               tGCTTGATGAATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTc                                                                                                                      >  1:1069752/1‑140 (MQ=255)               tGCTTGATGAATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTc                                                                                                                      >  1:835955/1‑140 (MQ=255)                gCTTGATGAATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCa                                                                                                                     >  2:1064383/1‑140 (MQ=255)                 cTTGATGAATAATCG‑CCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATa                                                                                                                   <  1:1060441/140‑1 (MQ=255)                  ttGATGAATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATa                                                                                                                   <  1:1064383/140‑1 (MQ=255)                  ttGATGAATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATa                                                                                                                   <  1:1248942/140‑1 (MQ=255)                   tgatgaATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTACTTTTTTTTTCAGGCACTGAATCATTTTTAATTCATa                                                                                                                   <  2:317458/140‑1 (MQ=255)                   tgatgaATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATaa                                                                                                                  >  2:1131425/1‑140 (MQ=255)                    gatgaATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAAt                                                                                                                 >  2:187286/1‑140 (MQ=255)                     atgaATAATCGCCCCAGCCATGTATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCAttttt                                                                                                                           <  2:1192443/129‑1 (MQ=255)                     atgaATAATCGCCCCAGCCATGTATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCAttttt                                                                                                                           >  1:1192443/1‑129 (MQ=255)                       gactaatCGCCCCAGCCATGCATTATCCATACCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTg                                                                                                              <  2:835955/137‑1 (MQ=255)                       gaATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTg                                                                                                              <  1:60802/140‑1 (MQ=255)                           aatCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAAc                                                                                                          <  2:469178/140‑1 (MQ=255)                               gCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCaa                                                                                                      >  2:1140874/1‑140 (MQ=255)                                ccccAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAAt                                                                                                     >  1:427741/1‑140 (MQ=255)                                  ccAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAAttt                                                                                                   >  1:606286/1‑140 (MQ=255)                                     gCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTtata                                                                                                >  1:115182/1‑140 (MQ=255)                                         tGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAAcc                                                                                                         <  2:481239/127‑1 (MQ=255)                                         tGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAAcc                                                                                                         >  1:481239/1‑127 (MQ=255)                                           cATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTataaaataa                                                                                          <  2:764263/140‑1 (MQ=255)                                           cATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAATTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTataaaataa                                                                                          <  1:2530/140‑1 (MQ=255)                                            aTTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTataaaataaa                                                                                         <  2:710794/140‑1 (MQ=255)                                            aTTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTataaaataaa                                                                                         <  1:581376/140‑1 (MQ=255)                                            aTTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTataaaataaa                                                                                         <  1:296214/140‑1 (MQ=255)                                            aTTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTataaaataaa                                                                                         <  1:187286/140‑1 (MQ=255)                                            aTTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTataaaataaa                                                                                         <  1:1131425/140‑1 (MQ=255)                                             ttATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAaaataaat                                                                                        <  1:158020/140‑1 (MQ=255)                                                tccatccCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGt                                                                                     <  1:111233/140‑1 (MQ=255)                                                tccatccCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGt                                                                                     <  1:1297939/140‑1 (MQ=255)                                                tccatccCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGt                                                                                     >  1:105226/1‑140 (MQ=255)                                                 ccatccCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTc                                                                                    <  2:1168818/140‑1 (MQ=255)                                                  catccCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCa                                                                                   >  2:75667/1‑140 (MQ=255)                                                   atccCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCat                                                                                  >  1:1049063/1‑140 (MQ=255)                                                    tccCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCata                                                                                 >  1:624373/1‑140 (MQ=255)                                                     cccTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCataa                                                                                >  1:85413/1‑140 (MQ=255)                                                     cccTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCataa                                                                                >  2:171998/1‑140 (MQ=255)                                                     cccTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCataa                                                                                >  1:1146316/1‑140 (MQ=255)                                                     cccTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTAAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCataa                                                                                >  1:984974/1‑140 (MQ=255)                                                      ccTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCataat                                                                               <  2:126941/140‑1 (MQ=255)                                                      ccTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCataat                                                                               <  2:1178398/140‑1 (MQ=255)                                                       cTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCataata                                                                              <  1:118030/140‑1 (MQ=255)                                                        tATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCAtaataa                                                                             >  2:1070297/1‑140 (MQ=255)                                                          tttttGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAag                                                                           <  2:479382/140‑1 (MQ=255)                                                           ttttGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTTTATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAagt                                                                          <  2:75344/140‑1 (MQ=255)                                                           ttttGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAagt                                                                          <  2:497382/140‑1 (MQ=255)                                                           ttttGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAagt                                                                          <  2:105226/140‑1 (MQ=255)                                                            tttGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAagtt                                                                         <  1:171998/140‑1 (MQ=255)                                                            tttGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAagtt                                                                         <  2:1101046/140‑1 (MQ=255)                                                            tttGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAagtt                                                                         <  1:781121/140‑1 (MQ=255)                                                            tttGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAagtt                                                                         <  1:81686/140‑1 (MQ=255)                                                            tttGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAagtt                                                                         <  1:855714/140‑1 (MQ=255)                                                              tGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAagttag                                                                       <  2:656778/140‑1 (MQ=255)                                                              tGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAagttag                                                                       <  2:1023019/140‑1 (MQ=255)                                                              tGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAagttag                                                                       <  1:309827/140‑1 (MQ=255)                                                                atatTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAagttagtt                                                                     <  2:426170/140‑1 (MQ=255)                                                                atatTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAagttagtt                                                                     <  2:327960/140‑1 (MQ=255)                                                                atatTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTAAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAagttagtt                                                                     <  2:984974/140‑1 (MQ=255)                                                                 tatTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTc                                                                    <  2:1306534/140‑1 (MQ=255)                                                                 tatTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTc                                                                    <  1:1070297/140‑1 (MQ=255)                                                                 tatTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTc                                                                    <  1:94424/140‑1 (MQ=255)                                                                 tatTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTc                                                                    <  2:1146316/140‑1 (MQ=255)                                                                          attaATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATa                                                           <  1:1140874/140‑1 (MQ=255)                                                                                     tataTTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAatat                                                <  2:367288/140‑1 (MQ=255)                                                                                     tataTTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAatat                                                <  1:117070/140‑1 (MQ=255)                                                                                     tataTTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAatat                                                <  2:85413/140‑1 (MQ=255)                                                                                     tataTTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAatat                                                <  1:75667/140‑1 (MQ=255)                                                                                     tataTTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAatat                                                <  2:1049063/140‑1 (MQ=255)                                                                                              ttGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAAt                                       <  1:516988/140‑1 (MQ=255)                                                                                              ttGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAAt                                       >  2:122141/1‑140 (MQ=255)                                                                                              ttGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAAt                                       >  2:1251059/1‑140 (MQ=255)                                                                                              ttGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAAt                                       <  1:122141/140‑1 (MQ=255)                                                                                                  tgttgtTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAATCCtt                                   >  2:781877/1‑140 (MQ=255)                                                                                                      gttATATTTTTTATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAATCCTTTGCg                               <  2:624373/140‑1 (MQ=255)                                                                                                             tttttATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAATCCTTTGCGTTGTGtt                        <  1:794753/140‑1 (MQ=255)                                                                                                                 tATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAATCCTTTGCGTTGTGTTCGct                    >  2:646085/1‑140 (MQ=255)                                                                                                                 tATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAATCCTTTGCGTTGTGTTCGct                    >  1:710271/1‑140 (MQ=255)                                                                                                                 tATCTTGTAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAATCCTTTGCGTTGTGTTCGct                    >  2:192054/1‑140 (MQ=255)                                                                                                                        tAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAATCCTTTGCGTTGTGTTCGCTCTTTAAt             >  2:1278498/1‑140 (MQ=255)                                                                                                                        tAC‑TTTTTTTTCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAATCCTTTGCGTTGTGTTCGCTCTTTAAt             >  1:125957/1‑140 (MQ=255)                                                                                                                            ttttttttCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAATCCTTTGCGTTGTGTTCGCTCTTTAATACg          <  1:1251059/140‑1 (MQ=255)                                                                                                                              ttttttCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAATCCTTTGCGTTGTGTTCGCTCTTTAATACGCt        >  2:837885/1‑140 (MQ=255)                                                                                                                              ttttttCAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAATCCTTTGCGTTGTGTTCGCTCTTTAATACGCt        <  2:115182/140‑1 (MQ=255)                                                                                                                                    cAGGCACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAATCCTTTGCGTTGTGTTCGCTCTTTAATACGCTCGGCCt  <  1:503303/140‑1 (MQ=255)                                                                                                                                        |                                                                                                                                        TATCATTGAGGTAATGCTTGATGAATAATCGCCCCAGCCATGCATTATCCATCCCTATTTTTGATATTTTTTTATTAATCCAGTTATATTTTTTTGGTGTTGTTATATTTTTTATCTTGTAC‑TTTTTTTTCAGGTACTGAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAATCCTTTGCGTTGTGTTCGCTCTTTAATACGCTCGGCCT  >  NC_000913/3804927‑3805196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑