Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,434,769	T→G	intergenic (‑363/+189)	ynaM ← / ← ttcC	Rac prophage; protein YnaM/putative tRNA 2‑thiocytidine (s(2)C32) synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,434,769	0	T	G	100.0%	336.0 / NA	91	intergenic (‑363/+189)	ynaM/ttcC	Rac prophage; protein YnaM/putative tRNA 2‑thiocytidine (s(2)C32) synthase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (53/38);  total (53/38)

TTATCTGAAGAAGAAAAATATCAAGGTGATATAGCCTATATGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATAT  >  NC_000913/1434633‑1434896                                                                                                                                         |                                                                                                                                ttATCTGAAGAAGAAAAATATCAAGGTGATATAGCCTATATGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCggttgggttg                                                                                                                              >  1:970199/1‑140 (MQ=255)                  atatCAAGGTGATATAGCCTATATGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGtt                                                                                                             >  2:319649/1‑140 (MQ=255)                        aGGTGATATAGCCTATATGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGaa                                                                                                       >  1:315768/1‑140 (MQ=255)                               ataGCCTATATGCCTTTGATGCGGAGGAATGAATGTGATGGTAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAAttttttt                                                                                                >  1:56726/1‑140 (MQ=255)                                 aGCCTATATGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCg                                                                                              <  2:712719/140‑1 (MQ=255)                                 aGCCTATATGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCg                                                                                              <  2:428956/140‑1 (MQ=255)                                   ccTATATGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCg                                                                                              <  1:245846/138‑1 (MQ=255)                                   ccTATATGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCg                                                                                              >  2:245846/1‑138 (MQ=255)                                   ccTATATGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGt                                                                                            >  2:1095940/1‑140 (MQ=255)                                   ccTATATGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGt                                                                                            >  1:1262165/1‑140 (MQ=255)                                     tataTGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTgg                                                                                          >  2:1348502/1‑140 (MQ=255)                                     tataTGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTgg                                                                                          >  2:343785/1‑140 (MQ=255)                                      atatGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGc                                                                                         <  2:1058516/140‑1 (MQ=255)                                       tatGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCa                                                                                        >  2:989228/1‑140 (MQ=255)                                       tatGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCa                                                                                        >  2:143113/1‑140 (MQ=255)                                       tatGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCa                                                                                        >  1:301960/1‑140 (MQ=255)                                       tatGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCa                                                                                        >  2:437738/1‑140 (MQ=255)                                        atGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCaa                                                                                       >  1:49238/1‑140 (MQ=255)                                            cTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAAt                                                                                   >  2:1072968/1‑140 (MQ=255)                                            cTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAAt                                                                                   <  1:16144/140‑1 (MQ=255)                                             tttGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATg                                                                                  >  2:1344101/1‑140 (MQ=255)                                             tttGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATg                                                                                  >  1:391156/1‑140 (MQ=255)                                             tttGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATg                                                                                  >  1:3163/1‑140 (MQ=255)                                              ttGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATgg                                                                                 >  2:695952/1‑140 (MQ=255)                                                 aTGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGc                                                                              >  2:855115/1‑140 (MQ=255)                                                      gaggaATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAAc                                                                         >  1:743545/1‑140 (MQ=255)                                                      gaggaATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAA‑TTTTTTCGGTGGCAAAAATGGGGCAAAACg                                                                        >  1:1245948/1‑140 (MQ=255)                                                            tgaatgTGATGGTAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGGCTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCa                                                                   <  2:56726/140‑1 (MQ=255)                                                               atgTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCaaaa                                                                <  2:1262165/140‑1 (MQ=255)                                                               atgTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCaaaa                                                                >  1:175696/1‑140 (MQ=255)                                                                   gATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCaaaagggg                                                            <  1:1067201/140‑1 (MQ=255)                                                                        gAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCaaaa                                                                >  2:634534/1‑131 (MQ=255)                                                                        gAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCaaaa                                                                <  1:634534/131‑1 (MQ=255)                                                                          gTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCaaaaggggcaaaaaa                                                     >  1:558634/1‑140 (MQ=255)                                                                            gATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCaaaaggggcaaaaaagg                                                   >  2:1051473/1‑140 (MQ=255)                                                                            gATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCaaaaggggcaaaaaagg                                                   <  1:143113/140‑1 (MQ=255)                                                                              tGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCaaaaggggcaaaaaagggg                                                 <  1:278577/140‑1 (MQ=255)                                                                              tGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCaaaaggggcaaaaaagggg                                                 >  1:669004/1‑140 (MQ=255)                                                                                 aTCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCaaaaggggcaaaaaaggggcaa                                              >  1:310427/1‑140 (MQ=255)                                                                                  tCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAaaaggggcaaaaaaggggcaaa                                             >  2:960039/1‑140 (MQ=255)                                                                                   cTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAaaggggcaaaaaaggggcaaaa                                            <  1:319649/140‑1 (MQ=255)                                                                                    tGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAaggggcaaaaaaggggcaaaaa                                           <  2:211001/140‑1 (MQ=255)                                                                                     gAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAggggcaaaaaaggggcaaaaaa                                          >  2:104665/1‑140 (MQ=255)                                                                                      aaTAGTTGAAAAACCGCAGTCACGACGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCaaaaggggcaaaaaa                                                     >  2:30729/1‑128 (MQ=255)                                                                                      aaTAGTTGAAAAACCGCAGTCACGACGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCaaaaggggcaaaaaa                                                     <  1:30729/128‑1 (MQ=255)                                                                                        tAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAaga                                       <  2:669004/140‑1 (MQ=255)                                                                                        tAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTAGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAaga                                       >  1:842531/1‑140 (MQ=255)                                                                                         aGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAagag                                      <  2:558634/140‑1 (MQ=255)                                                                                           ttGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTg                                    >  1:213661/1‑140 (MQ=255)                                                                                            tGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTgg                                   >  1:943621/1‑140 (MQ=255)                                                                                             gAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAag                                        >  1:1042507/1‑134 (MQ=255)                                                                                             gAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAag                                        <  2:1042507/134‑1 (MQ=255)                                                                                             gAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGa                                  <  1:1029542/140‑1 (MQ=255)                                                                                             gAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGa                                  <  1:695952/140‑1 (MQ=255)                                                                                             gAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGa                                  >  1:840782/1‑140 (MQ=255)                                                                                              aaaaaCCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGAt                                 <  1:205617/140‑1 (MQ=255)                                                                                                aaaCCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGa                                  >  1:152716/1‑137 (MQ=255)                                                                                                aaaCCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGa                                  <  2:152716/137‑1 (MQ=255)                                                                                                  aCCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATc                             <  1:1095940/140‑1 (MQ=255)                                                                                                   ccGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCg                            <  1:1051473/140‑1 (MQ=255)                                                                                                     gCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTa                          <  2:301960/140‑1 (MQ=255)                                                                                                        gTCACGTCGTATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCt                       >  2:1249855/1‑140 (MQ=255)                                                                                                                 tATGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATtgttgt              <  2:457768/140‑1 (MQ=255)                                                                                                                  aTGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTc             <  2:49238/140‑1 (MQ=255)                                                                                                                   tGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGTAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATc                             <  2:868058/123‑1 (MQ=255)                                                                                                                   tGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGTAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATc                             >  1:868058/1‑123 (MQ=255)                                                                                                                   tGCAAGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCg            <  2:585951/140‑1 (MQ=255)                                                                                                                       aGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCtga        >  1:122568/1‑140 (MQ=255)                                                                                                                       aGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCtga        >  1:1046889/1‑140 (MQ=255)                                                                                                                       aGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCtga        <  1:15084/140‑1 (MQ=255)                                                                                                                       aGAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCtga        >  2:15084/1‑140 (MQ=255)                                                                                                                        gAACGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCtgat       <  1:855115/140‑1 (MQ=255)                                                                                                                         aaCGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCtgatg      <  2:919155/140‑1 (MQ=255)                                                                                                                         aaCGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCtgatg      <  1:1344101/140‑1 (MQ=255)                                                                                                                         aaCGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCtgatg      >  2:862112/1‑140 (MQ=255)                                                                                                                         aaCGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCtgatg      <  2:175696/140‑1 (MQ=255)                                                                                                                         aaCGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCtgatg      >  1:471031/1‑140 (MQ=255)                                                                                                                         aaCGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCtgatg      <  1:1162389/140‑1 (MQ=255)                                                                                                                         aaCGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCtgatg      >  1:828275/1‑140 (MQ=255)                                                                                                                           cGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCtgatg      >  2:1081131/1‑138 (MQ=255)                                                                                                                           cGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCtgatg      <  1:1081131/138‑1 (MQ=255)                                                                                                                           cGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTgatgat    <  2:471031/140‑1 (MQ=255)                                                                                                                           cGTGCTGCGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTgatgat    >  2:586520/1‑140 (MQ=255)                                                                                                                             tgctgcGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAGAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGatat  >  1:1197455/1‑140 (MQ=255)                                                                                                                             tgctgcGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATtgttgt              <  2:214469/128‑1 (MQ=255)                                                                                                                             tgctgcGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATtgttgt              >  1:214469/1‑128 (MQ=255)                                                                                                                             tgctgcGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCtgatg      >  1:1148478/1‑136 (MQ=255)                                                                                                                             tgctgcGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCtgatg      <  2:1148478/136‑1 (MQ=255)                                                                                                                             tgctgcGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGatat  >  1:1203492/1‑140 (MQ=255)                                                                                                                             tgctgcGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGatat  >  2:208277/1‑140 (MQ=255)                                                                                                                             tgctgcGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGatat  >  1:322550/1‑140 (MQ=255)                                                                                                                                  cGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCtgatg      >  2:1010820/1‑131 (MQ=255)                                                                                                                                  cGGTTGGGTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCtgatg      <  1:1010820/131‑1 (MQ=255)                                                                                                                                         |                                                                                                                                TTATCTGAAGAAGAAAAATATCAAGGTGATATAGCCTATATGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATAT  >  NC_000913/1434633‑1434896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑