| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,529,396 | T→C | pseudogene (1507/2049 nt) | rhsE → | RhsE protein in rhs element |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,529,396 | 0 | T | C | 98.5% | 486.9 / ‑3.6 | 135 | pseudogene (1507/2049 nt) | rhsE | RhsE protein in rhs element |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (64/69); total (65/70) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 140 total aligned reads displayed.
TGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACATCAGGTGGACTAATTTATGCC > NC_000913/1529260‑1529530 | tgaATGGGGTAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGcata > 2:652825/1‑140 (MQ=255)tgaATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGcata > 1:333175/1‑140 (MQ=255) gaATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCCCCTGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTAAAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCatat < 2:63147/140‑1 (MQ=255) gaATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCatat > 2:521747/1‑140 (MQ=255) aTGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCa > 1:79144/1‑140 (MQ=255) aTGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCa > 2:1171045/1‑140 (MQ=255) aTGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCa > 1:667769/1‑140 (MQ=255) aTGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCa > 1:1315798/1‑140 (MQ=255) ggggCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCAcc < 1:1129559/140‑1 (MQ=255) ggggCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCAcc > 2:912436/1‑140 (MQ=255) ggCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCatat > 2:1141354/1‑134 (MQ=255) ggCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCAcccc > 1:1174575/1‑140 (MQ=255) ggCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGACGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCAcccc > 2:1100518/1‑140 (MQ=255) cAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCgg > 2:1288710/1‑140 (MQ=255) cAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCgg > 1:262966/1‑140 (MQ=255) aaCCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGa < 2:7524/140‑1 (MQ=255) aaCCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGa > 1:987479/1‑140 (MQ=255) gCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGa < 2:333175/140‑1 (MQ=255) cTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGAt < 2:534828/140‑1 (MQ=255) ttAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCatat < 2:1348748/124‑1 (MQ=255) ttAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCatat > 1:1348748/1‑124 (MQ=255) ttAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGAtt > 1:1066487/1‑140 (MQ=255) ttAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGAtt > 1:536734/1‑140 (MQ=255) aggagAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTg > 1:677594/1‑140 (MQ=255) gagaACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTgag > 1:274928/1‑140 (MQ=255) agaACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTgaga > 2:146850/1‑140 (MQ=255) agaACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTgaga < 1:1219250/140‑1 (MQ=255) agaACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTgaga > 2:660804/1‑140 (MQ=255) gaACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGagag < 2:778450/140‑1 (MQ=255) aaCCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGa < 1:615705/122‑1 (MQ=255) aaCCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGa > 2:615705/1‑122 (MQ=255) aaCCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAgg < 1:146850/140‑1 (MQ=255) aaCCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAgg > 1:992330/1‑140 (MQ=255) aCCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGt < 1:660804/140‑1 (MQ=255) cGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGtgga < 1:106452/140‑1 (MQ=255) cGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGtgga < 2:912089/140‑1 (MQ=255) cATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGtggatg < 1:652825/140‑1 (MQ=255) cATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGtggatg < 2:1362502/140‑1 (MQ=255) cccTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAat < 1:842449/139‑1 (MQ=255) aCCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGtt < 1:376570/124‑1 (MQ=255) aCCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGtt > 2:376570/1‑124 (MQ=255) aCCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGagag < 2:216553/129‑1 (MQ=255) aCCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGagag > 1:216553/1‑129 (MQ=255) ccTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAata < 1:912436/140‑1 (MQ=255) cTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAatat < 2:1066487/140‑1 (MQ=255) cTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAatat < 2:954507/140‑1 (MQ=255) cTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAatat > 1:735191/1‑140 (MQ=255) ccccAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTa < 2:1315798/138‑1 (MQ=255) aGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAg > 2:1240738/1‑140 (MQ=255) gCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGt > 2:397769/1‑140 (MQ=255) gCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGt < 1:299795/140‑1 (MQ=255) gCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGt > 2:79955/1‑140 (MQ=255) gCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGt > 2:639631/1‑140 (MQ=255) ccGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTa > 2:594593/1‑140 (MQ=255) ccGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTa < 2:274928/140‑1 (MQ=255) aCCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCg > 1:1096581/1‑140 (MQ=255) ccGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGTTTGGGTTGCGAGGTGGTTGGAATTTGTatccgtatccgt > 2:538408/1‑140 (MQ=17) cGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGtt < 2:192888/140‑1 (MQ=255) cTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGaa < 2:677594/140‑1 (MQ=255) tGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTAt < 1:887423/131‑1 (MQ=255) tGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAAt < 2:1204731/140‑1 (MQ=255) tGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAAt > 2:493698/1‑140 (MQ=255) cAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATccc > 2:729293/1‑140 (MQ=255) aGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCa < 1:1288710/140‑1 (MQ=255) gggCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCAt < 1:802870/140‑1 (MQ=255) gcagcagcaTGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATAc < 1:158395/140‑1 (MQ=255) gcagcagcaTGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATAc < 1:1240738/140‑1 (MQ=255) gcagcagcaTGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATAc < 1:431613/140‑1 (MQ=255) agcagcaTGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACaa > 1:1132992/1‑140 (MQ=255) tgatgaGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAg < 1:729997/140‑1 (MQ=255) tgatgaGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAg < 1:521747/140‑1 (MQ=255) tgatgaGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAg < 2:421933/140‑1 (MQ=255) aggagTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAg < 1:732035/135‑1 (MQ=255) aggagTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAg > 2:732035/1‑135 (MQ=255) cGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATgggg < 1:639631/140‑1 (MQ=255) cTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGa < 1:1171045/140‑1 (MQ=255) cTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGa < 2:987479/140‑1 (MQ=255) tGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGAt > 1:310622/1‑140 (MQ=255) tGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGAt > 1:26036/1‑140 (MQ=255) gTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATg < 2:1132992/140‑1 (MQ=255) tACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGc > 1:837099/1‑140 (MQ=255) tACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGc > 2:206215/1‑140 (MQ=255) taACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTg > 2:707353/1‑140 (MQ=255) aCCGTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTgag > 1:67995/1‑140 (MQ=255) gTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGAtt < 1:810784/134‑1 (MQ=255) gTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGAtt > 2:810784/1‑134 (MQ=255) gTCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAat > 2:262982/1‑140 (MQ=255) tCACCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAata < 2:1096581/140‑1 (MQ=255) aCCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGAt < 1:919269/125‑1 (MQ=255) aCCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGAt > 2:919269/1‑125 (MQ=255) aCCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGa < 2:300491/129‑1 (MQ=255) aCCGGCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATg > 2:1237050/1‑140 (MQ=255) ggCACTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACa < 1:594593/140‑1 (MQ=255) cTACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACATCAg < 1:896851/140‑1 (MQ=255) tACGATCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACATCAgg < 2:1174575/140‑1 (MQ=255) aTCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACATCAGGTGGa < 2:330933/140‑1 (MQ=255) aTCCGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACATCAGGTGGa > 1:17923/1‑140 (MQ=255) cGTTGCAGGGGCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACATCAGGTGGACTa > 1:306133/1‑140 (MQ=255) ggggCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACATCAGGTGGACTAATTTATg > 1:910499/1‑140 (MQ=255) gggCGGCATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACATCAGGTGGACTAATTTATGc > 2:512295/1‑140 (MQ=255) | TGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACATCAGGTGGACTAATTTATGCC > NC_000913/1529260‑1529530 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |